Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0003409

Physical Location & Seq

Genomic Coordinates Reverse (-)

20922559 .. 20923607

Gene Structure 1049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1180100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTTTGGGACGGGACGGAACAATTTTTTTTTTTCTTCTTTTTGCTCTTCATTCAGTTGGATTTGTGAGATAGCTCGGATTCTGGTGGAATTCCTGGAGGTTGCAATCACTTCAGTCGTTTTCCTCAAAGGAATTTACCCTCCAGGTGCTTTTGAAAGAAGGAAATATATGAATTTGGTGGTTCATAGAGCTCGTCACCCTGAATTCAGAGATTACATCCATTCCGCTGGTCTCGTGGAGAGAGTAGCTGTTATTTTCTTTGACGGGGACAACATCCCTGTGGAAAGATTTATGTTTAAGCTCAGTGTGAATCAATCGCATGGCTCGAGGGTGGAAGAAGCTGACCTGGAGTTCTCACTAAGGTCATTTTTTATCAAGCTTCCTGTCGCAGAACCCCTTACCAAGGCTCTTCCCCAGAGTAAATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0033554 GO:0050896 GO:0051716

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04914 ko05100 ko05131 ko05166 map04110 map04111 map04113 map04114 map04914 map05100 map05131 map05166

Pfam Domains

Protein Families

HORMA

Protein Analysis

143

Amino Acids

16.33

Weight (kDa)

8.66

Isoelectric Point (pI)

45.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16590 AT1G16590
fragaria_vesca	FvH4_3g15651 FvH4_3g15651 FvH4_3g15651 FvH4_3g15651
malus_domestica	MD05G1220700.v1.1 MD10G1203100.v1.1 MD17G1180100.v1.1
prunus_persica	Prupe.4G139000_v2.0.a1 Prupe.4G139100_v2.0.a1 Prupe.4G141800_v2.0.a1 Prupe.4G141800_v2.0.a1
pyrus_communis	pycom10g17370
rosa_chinensis	RchiOBHm_Chr5g0026311 RchiOBHm_Chr5g0026331
rosa_multiflora	Rmu_sc0002636.1_g000001 Rmu_sc0003053.1_g000001 Rmu_sc0005764.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053030
rosa_rugosa	Rorug05G0092300 Rorug05G0092300
rosa_samantha	Rh1AG339700 Rh4CG111000 Rh4CG215700 Rh5AG185300 Rh5BG182300 Rh5BG336900 Rh5CG201700 Rh5DG183900 Rh5DG184000 Rh6AG348500 Rh6DG077100
rosa_wichuraiana	Rw5G016820 Rw6G010600 Rw7G039410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	225
AcsI	RAATTY	4 cut(s)	89, 132, 172, 203
AcuI	CTGAAG	1 cut(s)	96
AfiI	CCNNNNNNNGG	1 cut(s)	403
AgsI	TTSAA	1 cut(s)	155
AjnI	CCWGG	3 cut(s)	93, 142, 345
AluBI	AGCT	6 cut(s)	74, 191, 248, 301, 341, 379
AluI	AGCT	6 cut(s)	74, 191, 248, 301, 341, 379
Alw21I	GWGCWC	1 cut(s)	193
Alw26I	GTCTC	1 cut(s)	236
Ama87I	CYCGRG	1 cut(s)	325
ApoI	RAATTY	4 cut(s)	89, 132, 172, 203
AsuHPI	GGTGA	1 cut(s)	188
AvaI	CYCGRG	1 cut(s)	325
BanII	GRGCYC	1 cut(s)	193
BauI	CACGAG	1 cut(s)	233
Bbv12I	GWGCWC	1 cut(s)	193
BciT130I	CCWGG	3 cut(s)	95, 144, 347
BcoDI	GTCTC	1 cut(s)	236
Bme1390I	CCNGG	3 cut(s)	95, 144, 347
BmeT110I	CYCGRG	1 cut(s)	325
BmrFI	CCNGG	3 cut(s)	95, 144, 347
BpmI	CTGGAG	3 cut(s)	116, 126, 368
BsaI	GGTCTC	1 cut(s)	236
BsaJI	CCNNGG	1 cut(s)	402
Bsc4I	CCNNNNNNNGG	1 cut(s)	403
BseBI	CCWGG	3 cut(s)	95, 144, 347
BseDI	CCNNGG	1 cut(s)	402
BseGI	GGATG	2 cut(s)	216, 273
BseLI	CCNNNNNNNGG	1 cut(s)	403
BseMII	CTCAG	1 cut(s)	316
BsiHKAI	GWGCWC	1 cut(s)	193
BsiHKCI	CYCGRG	1 cut(s)	325
BslFI	GGGAC	3 cut(s)	22, 27, 281
BslI	CCNNNNNNNGG	1 cut(s)	403
BsmAI	GTCTC	1 cut(s)	236
BsmFI	GGGAC	3 cut(s)	22, 27, 281
Bso31I	GGTCTC	1 cut(s)	236
BsoBI	CYCGRG	1 cut(s)	325
Bsp1286I	GDGCHC	1 cut(s)	193
BspACI	CCGC	1 cut(s)	225
BspCNI	CTCAG	1 cut(s)	315
BspQI	GCTCTTC	2 cut(s)	52, 414
BspTNI	GGTCTC	1 cut(s)	236
BssECI	CCNNGG	1 cut(s)	402
BssSI	CACGAG	1 cut(s)	233
BssT1I	CCWWGG	1 cut(s)	402
Bst2BI	CACGAG	1 cut(s)	233
Bst2UI	CCWGG	3 cut(s)	95, 144, 347
Bst6I	CTCTTC	2 cut(s)	52, 414
BstDEI	CTNAG	2 cut(s)	302, 359
BstENI	CCTNNNNNAGG	1 cut(s)	401
BstF5I	GGATG	2 cut(s)	216, 273
BstMAI	GTCTC	1 cut(s)	236
BstNI	CCWGG	3 cut(s)	95, 144, 347
BstSCI	CCNGG	3 cut(s)	93, 142, 345
BstXI	CCANNNNNNTGG	1 cut(s)	227
BtsCI	GGATG	2 cut(s)	216, 273
BtsIMutI	CAGTG	1 cut(s)	310
CviAII	CATG	1 cut(s)	320
CviJI	RGCY	8 cut(s)	74, 191, 248, 301, 324, 341, 379, 407
CviKI_1	RGCY	8 cut(s)	74, 191, 248, 301, 324, 341, 379, 407
DdeI	CTNAG	2 cut(s)	302, 359
Eam1104I	CTCTTC	2 cut(s)	52, 414
EarI	CTCTTC	2 cut(s)	52, 414
Ecl136II	GAGCTC	1 cut(s)	191
Eco130I	CCWWGG	1 cut(s)	402
Eco24I	GRGCYC	1 cut(s)	193
Eco31I	GGTCTC	1 cut(s)	236
Eco53kI	GAGCTC	1 cut(s)	191
Eco57I	CTGAAG	1 cut(s)	96
Eco88I	CYCGRG	1 cut(s)	325
EcoICRI	GAGCTC	1 cut(s)	191
EcoNI	CCTNNNNNAGG	1 cut(s)	401
EcoRI	GAATTC	2 cut(s)	89, 203
EcoRII	CCWGG	3 cut(s)	93, 142, 345
EcoT14I	CCWWGG	1 cut(s)	402
EcoT38I	GRGCYC	1 cut(s)	193
ErhI	CCWWGG	1 cut(s)	402
FaeI	CATG	1 cut(s)	323
FaiI	YATR	5 cut(s)	168, 170, 186, 293, 321
FaqI	GGGAC	3 cut(s)	22, 27, 281
FatI	CATG	1 cut(s)	319
FokI	GGATG	2 cut(s)	203, 260
FriOI	GRGCYC	1 cut(s)	193
GsuI	CTGGAG	3 cut(s)	116, 126, 368
Hin1II	CATG	1 cut(s)	323
HindIII	AAGCTT	1 cut(s)	377
HinfI	GANTC	2 cut(s)	79, 310
HphI	GGTGA	1 cut(s)	188
Hpy188I	TCNGA	2 cut(s)	78, 209
HpyAV	CCTTC	1 cut(s)	153
HpyCH4V	TGCA	1 cut(s)	104
HpyF3I	CTNAG	2 cut(s)	302, 359
Hsp92II	CATG	1 cut(s)	323
LguI	GCTCTTC	2 cut(s)	52, 414
MaeIII	GTNAC	1 cut(s)	194
MboII	GAAGA	4 cut(s)	27, 39, 347, 401
MhlI	GDGCHC	1 cut(s)	193
MluCI	AATT	5 cut(s)	22, 89, 132, 172, 203
MmeI	TCCRAC	1 cut(s)	38
MnlI	CCTC	4 cut(s)	91, 134, 150, 321
MseI	TTAA	1 cut(s)	297
MslI	CAYNNNNRTG	1 cut(s)	278
MspA1I	CMGCKG	1 cut(s)	227
MspR9I	CCNGG	3 cut(s)	95, 144, 347
MvaI	CCWGG	3 cut(s)	95, 144, 347
NlaIII	CATG	1 cut(s)	323
NmuCI	GTSAC	1 cut(s)	194
PaeR7I	CTCGAG	1 cut(s)	325
PciSI	GCTCTTC	2 cut(s)	52, 414
PcsI	WCGNNNNNNNCGW	1 cut(s)	323
PfeI	GAWTC	2 cut(s)	79, 310
PfoI	TCCNGGA	1 cut(s)	93
Psp124BI	GAGCTC	1 cut(s)	193
Psp6I	CCWGG	3 cut(s)	93, 142, 345
PspGI	CCWGG	3 cut(s)	93, 142, 345
PspXI	VCTCGAGB	1 cut(s)	325
RseI	CAYNNNNRTG	1 cut(s)	278
SacI	GAGCTC	1 cut(s)	193
SapI	GCTCTTC	2 cut(s)	52, 414
SaqAI	TTAA	1 cut(s)	297
ScrFI	CCNGG	3 cut(s)	95, 144, 347
SduI	GDGCHC	1 cut(s)	193
Sfr274I	CTCGAG	1 cut(s)	325
SlaI	CTCGAG	1 cut(s)	325
SmiMI	CAYNNNNRTG	1 cut(s)	278
SmlI	CTYRAG	1 cut(s)	325
SmoI	CTYRAG	1 cut(s)	325
Sse9I	AATT	5 cut(s)	22, 89, 132, 172, 203
SsiI	CCGC	1 cut(s)	225
SstI	GAGCTC	1 cut(s)	193
StyD4I	CCNGG	3 cut(s)	93, 142, 345
StyI	CCWWGG	1 cut(s)	402
TaqI	TCGA	1 cut(s)	326
TasI	AATT	5 cut(s)	22, 89, 132, 172, 203
TfiI	GAWTC	2 cut(s)	79, 310
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	1 cut(s)	194
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	3 cut(s)	39, 173, 185
TspGWI	ACGGA	1 cut(s)	31
TspRI	CASTG	1 cut(s)	310
XagI	CCTNNNNNAGG	1 cut(s)	401
XapI	RAATTY	4 cut(s)	89, 132, 172, 203
XhoI	CTCGAG	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.