Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003409

Physical Location & Seq

Genomic Coordinates Reverse (-)

20574664 .. 20575996

Gene Structure 1333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g17370.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGAGCGCAAAGACAGCCAGTCTCCTCAAGGTGAGATAACTCGGATTCTGGTGGAATTCCTCGAGGTTGCAATCACTTCAGTCGTTTTCCTCAAAGGAATTTACCCTCCAGGTGCTTTTGAAAGAAGGAAATATATGAATTTGGTGGTTCATAGAGCTCGTCACCCTGAACTCAGAGATTACATCCATTCCGCTGTCTCGGGACTTCTTCCTTTTATCCAAAAGGGTCTCGTGGAGAGAGTAGCTGTTATTTTCTTTAACGGTGACAACATCCCTGTGGAAAGATTTATGTTTAAGCTCAATGTGAATCAATCGTATGGCTCGAGGGTGGAAGAGGCTGACCTGGAGTTCTCACTGAGGTCATTTTTTATCAAGCTTCCTGTCGCAGAACCCCTTACCAAGGCTCTTCCCCAGAATTGCAGGTGGGAGATAACTGCTTACTTTCGATCACTTCCTCAGGCTTGTACAAGTAAGGATGCAGAGTCGTGGATTCCAACAGATACAAAGCAGTGGCAACAACCTCCGTTAATAACCCCTATTAAGTCAATGAGTAGCCAACCTCTATCTGTGCAGTTATATTTGGAACATCCAAGTTTATCTGAACCAAAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0033554 GO:0050896 GO:0051716

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04914 ko05100 ko05131 ko05166 map04110 map04111 map04113 map04114 map04914 map05100 map05131 map05166

Pfam Domains

Protein Families

HORMA

Protein Analysis

205

Amino Acids

23.39

Weight (kDa)

8.52

Isoelectric Point (pI)

62.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16590 AT1G16590
fragaria_vesca	FvH4_3g15651 FvH4_3g15651 FvH4_3g15651 FvH4_3g15651
malus_domestica	MD05G1220700.v1.1 MD10G1203100.v1.1 MD17G1180100.v1.1
prunus_persica	Prupe.4G139000_v2.0.a1 Prupe.4G139100_v2.0.a1 Prupe.4G141800_v2.0.a1 Prupe.4G141800_v2.0.a1
pyrus_communis	pycom10g17370
rosa_chinensis	RchiOBHm_Chr5g0026311 RchiOBHm_Chr5g0026331
rosa_multiflora	Rmu_sc0002636.1_g000001 Rmu_sc0003053.1_g000001 Rmu_sc0005764.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053030
rosa_rugosa	Rorug05G0092300 Rorug05G0092300
rosa_samantha	Rh1AG339700 Rh4CG111000 Rh4CG215700 Rh5AG185300 Rh5BG182300 Rh5BG336900 Rh5CG201700 Rh5DG183900 Rh5DG184000 Rh6AG348500 Rh6DG077100
rosa_wichuraiana	Rw5G016820 Rw6G010600 Rw7G039410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	411
AbsI	CCTCGAGG	1 cut(s)	62
Acc36I	ACCTGC	1 cut(s)	411
AciI	CCGC	1 cut(s)	192
AcsI	RAATTY	3 cut(s)	56, 99, 139
AcuI	CTGAAG	1 cut(s)	63
AfaI	GTAC	1 cut(s)	466
AfiI	CCNNNNNNNGG	1 cut(s)	400
AgsI	TTSAA	1 cut(s)	122
AhdI	GACNNNNNGTC	1 cut(s)	19
AjnI	CCWGG	2 cut(s)	109, 342
AluBI	AGCT	4 cut(s)	158, 245, 298, 376
AluI	AGCT	4 cut(s)	158, 245, 298, 376
Alw21I	GWGCWC	1 cut(s)	160
Alw26I	GTCTC	3 cut(s)	27, 202, 233
Ama87I	CYCGRG	3 cut(s)	62, 199, 322
ApoI	RAATTY	3 cut(s)	56, 99, 139
AspLEI	GCGC	1 cut(s)	9
AsuHPI	GGTGA	3 cut(s)	44, 155, 275
AvaI	CYCGRG	3 cut(s)	62, 199, 322
AxyI	CCTNAGG	1 cut(s)	456
BanII	GRGCYC	1 cut(s)	160
BauI	CACGAG	1 cut(s)	230
Bbv12I	GWGCWC	1 cut(s)	160
BciT130I	CCWGG	2 cut(s)	111, 344
BcoDI	GTCTC	3 cut(s)	27, 202, 233
BfuAI	ACCTGC	1 cut(s)	411
Bme1390I	CCNGG	2 cut(s)	111, 344
BmeRI	GACNNNNNGTC	1 cut(s)	19
BmeT110I	CYCGRG	3 cut(s)	62, 199, 322
BmrFI	CCNGG	2 cut(s)	111, 344
BmsI	GCATC	1 cut(s)	466
BpmI	CTGGAG	2 cut(s)	93, 365
BpuEI	CTTGAG	1 cut(s)	12
BsaI	GGTCTC	1 cut(s)	233
BsaJI	CCNNGG	1 cut(s)	399
Bsc4I	CCNNNNNNNGG	1 cut(s)	400
Bse1I	ACTGG	1 cut(s)	19
Bse21I	CCTNAGG	1 cut(s)	456
BseBI	CCWGG	2 cut(s)	111, 344
BseDI	CCNNGG	1 cut(s)	399
BseGI	GGATG	4 cut(s)	183, 270, 481, 586
BseLI	CCNNNNNNNGG	1 cut(s)	400
BseMII	CTCAG	3 cut(s)	187, 347, 470
BseNI	ACTGG	1 cut(s)	19
BseRI	GAGGAG	1 cut(s)	15
BsgI	GTGCAG	1 cut(s)	590
BsiHKAI	GWGCWC	1 cut(s)	160
BsiHKCI	CYCGRG	3 cut(s)	62, 199, 322
BslFI	GGGAC	1 cut(s)	216
BslI	CCNNNNNNNGG	1 cut(s)	400
BsmAI	GTCTC	3 cut(s)	27, 202, 233
BsmFI	GGGAC	1 cut(s)	216
Bso31I	GGTCTC	1 cut(s)	233
BsoBI	CYCGRG	3 cut(s)	62, 199, 322
Bsp1286I	GDGCHC	1 cut(s)	160
Bsp1407I	TGTACA	1 cut(s)	464
Bsp143I	GATC	1 cut(s)	446
BspACI	CCGC	1 cut(s)	192
BspCNI	CTCAG	3 cut(s)	186, 348, 469
BspMI	ACCTGC	1 cut(s)	411
BspQI	GCTCTTC	1 cut(s)	411
BspTNI	GGTCTC	1 cut(s)	233
BsrGI	TGTACA	1 cut(s)	464
BsrI	ACTGG	1 cut(s)	19
BssECI	CCNNGG	1 cut(s)	399
BssMI	GATC	1 cut(s)	446
BssSI	CACGAG	1 cut(s)	230
BssT1I	CCWWGG	1 cut(s)	399
Bst2BI	CACGAG	1 cut(s)	230
Bst2UI	CCWGG	2 cut(s)	111, 344
Bst4CI	ACNGT	1 cut(s)	263
Bst6I	CTCTTC	2 cut(s)	327, 411
BstAUI	TGTACA	1 cut(s)	464
BstDEI	CTNAG	3 cut(s)	173, 356, 456
BstENI	CCTNNNNNAGG	1 cut(s)	398
BstF5I	GGATG	4 cut(s)	183, 270, 481, 586
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	1 cut(s)	449
BstMAI	GTCTC	3 cut(s)	27, 202, 233
BstMBI	GATC	1 cut(s)	446
BstMWI	GCNNNNNNNGC	1 cut(s)	15
BstNI	CCWGG	2 cut(s)	111, 344
BstSCI	CCNGG	2 cut(s)	109, 342
Bsu36I	CCTNAGG	1 cut(s)	456
BtsCI	GGATG	4 cut(s)	183, 270, 481, 586
BtsI	GCAGTG	1 cut(s)	515
BtsIMutI	CAGTG	2 cut(s)	353, 515
BveI	ACCTGC	1 cut(s)	411
CfoI	GCGC	1 cut(s)	9
Csp6I	GTAC	1 cut(s)	465
CviQI	GTAC	1 cut(s)	465
DdeI	CTNAG	3 cut(s)	173, 356, 456
DpnI	GATC	1 cut(s)	448
DpnII	GATC	1 cut(s)	446
DriI	GACNNNNNGTC	1 cut(s)	19
Eam1104I	CTCTTC	2 cut(s)	327, 411
Eam1105I	GACNNNNNGTC	1 cut(s)	19
EarI	CTCTTC	2 cut(s)	327, 411
Ecl136II	GAGCTC	1 cut(s)	158
Eco130I	CCWWGG	1 cut(s)	399
Eco24I	GRGCYC	1 cut(s)	160
Eco31I	GGTCTC	1 cut(s)	233
Eco53kI	GAGCTC	1 cut(s)	158
Eco57I	CTGAAG	1 cut(s)	63
Eco81I	CCTNAGG	1 cut(s)	456
Eco88I	CYCGRG	3 cut(s)	62, 199, 322
EcoICRI	GAGCTC	1 cut(s)	158
EcoNI	CCTNNNNNAGG	1 cut(s)	398
EcoRI	GAATTC	1 cut(s)	56
EcoRII	CCWGG	2 cut(s)	109, 342
EcoT14I	CCWWGG	1 cut(s)	399
EcoT38I	GRGCYC	1 cut(s)	160
ErhI	CCWWGG	1 cut(s)	399
FaiI	YATR	6 cut(s)	135, 137, 153, 290, 318, 577
FaqI	GGGAC	1 cut(s)	216
FokI	GGATG	4 cut(s)	170, 257, 488, 573
FriOI	GRGCYC	1 cut(s)	160
GlaI	GCGC	1 cut(s)	8
GsuI	CTGGAG	2 cut(s)	93, 365
HhaI	GCGC	1 cut(s)	9
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	4 cut(s)	46, 307, 482, 490
HphI	GGTGA	3 cut(s)	44, 155, 275
Hpy188I	TCNGA	3 cut(s)	45, 176, 601
Hpy188III	TCNNGA	1 cut(s)	201
HpyAV	CCTTC	1 cut(s)	120
HpyCH4III	ACNGT	1 cut(s)	263
HpyCH4V	TGCA	4 cut(s)	71, 420, 479, 571
HpyF10VI	GCNNNNNNNGC	1 cut(s)	15
HpyF3I	CTNAG	3 cut(s)	173, 356, 456
HspAI	GCGC	1 cut(s)	7
Kzo9I	GATC	1 cut(s)	446
LguI	GCTCTTC	1 cut(s)	411
LmnI	GCTCC	1 cut(s)	4
LweI	GCATC	1 cut(s)	466
MaeIII	GTNAC	2 cut(s)	161, 263
MalI	GATC	1 cut(s)	448
MboI	GATC	1 cut(s)	446
MboII	GAAGA	3 cut(s)	200, 344, 398
MhlI	GDGCHC	1 cut(s)	160
MluCI	AATT	4 cut(s)	56, 99, 139, 415
MlyI	GAGTC	1 cut(s)	491
MmeI	TCCRAC	1 cut(s)	518
MseI	TTAA	4 cut(s)	258, 294, 527, 540
MslI	CAYNNNNRTG	1 cut(s)	275
MspA1I	CMGCKG	1 cut(s)	194
MspR9I	CCNGG	2 cut(s)	111, 344
MvaI	CCWGG	2 cut(s)	111, 344
MwoI	GCNNNNNNNGC	1 cut(s)	15
NdeII	GATC	1 cut(s)	446
NmuCI	GTSAC	2 cut(s)	161, 263
PaeR7I	CTCGAG	2 cut(s)	62, 322
PaqCI	CACCTGC	1 cut(s)	411
PciSI	GCTCTTC	1 cut(s)	411
PcsI	WCGNNNNNNNCGW	1 cut(s)	320
PfeI	GAWTC	3 cut(s)	46, 307, 490
PleI	GAGTC	1 cut(s)	490
PpsI	GAGTC	1 cut(s)	490
Psp124BI	GAGCTC	1 cut(s)	160
Psp6I	CCWGG	2 cut(s)	109, 342
PspGI	CCWGG	2 cut(s)	109, 342
PspXI	VCTCGAGB	2 cut(s)	62, 322
RsaI	GTAC	1 cut(s)	466
RsaNI	GTAC	1 cut(s)	465
RseI	CAYNNNNRTG	1 cut(s)	275
SacI	GAGCTC	1 cut(s)	160
SapI	GCTCTTC	1 cut(s)	411
SaqAI	TTAA	4 cut(s)	258, 294, 527, 540
Sau3AI	GATC	1 cut(s)	446
SchI	GAGTC	1 cut(s)	491
ScrFI	CCNGG	2 cut(s)	111, 344
SduI	GDGCHC	1 cut(s)	160
SfaNI	GCATC	1 cut(s)	466
Sfr274I	CTCGAG	2 cut(s)	62, 322
SlaI	CTCGAG	2 cut(s)	62, 322
SmiMI	CAYNNNNRTG	1 cut(s)	275
SmlI	CTYRAG	3 cut(s)	27, 62, 322
SmoI	CTYRAG	3 cut(s)	27, 62, 322
Sse9I	AATT	4 cut(s)	56, 99, 139, 415
SsiI	CCGC	1 cut(s)	192
SstI	GAGCTC	1 cut(s)	160
StyD4I	CCNGG	2 cut(s)	109, 342
StyI	CCWWGG	1 cut(s)	399
TaaI	ACNGT	1 cut(s)	263
TaqI	TCGA	3 cut(s)	63, 323, 445
TasI	AATT	4 cut(s)	56, 99, 139, 415
TatI	WGTACW	1 cut(s)	464
TfiI	GAWTC	3 cut(s)	46, 307, 490
Tru1I	TTAA	4 cut(s)	258, 294, 527, 540
Tru9I	TTAA	4 cut(s)	258, 294, 527, 540
TscAI	CASTG	2 cut(s)	360, 515
TseFI	GTSAC	2 cut(s)	161, 263
Tsp45I	GTSAC	2 cut(s)	161, 263
TspDTI	ATGAA	2 cut(s)	140, 152
TspGWI	ACGGA	1 cut(s)	513
TspRI	CASTG	2 cut(s)	360, 515
XagI	CCTNNNNNAGG	1 cut(s)	398
XapI	RAATTY	3 cut(s)	56, 99, 139
XhoI	CTCGAG	2 cut(s)	62, 322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.