Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0003409

Physical Location & Seq

Genomic Coordinates Reverse (-)

18273923 .. 18278223

Gene Structure 4301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G010600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGAAGTTTGAAAAATCCTACCAGGTGTACCTTGTGCAAGATGCACAACTTTGTACAACAGATTATGAAACCGCTCAGATTCTGGTTGAGTTCTTGGAGGTGGCAATACAATCAATCATTTCCTCAAAGGAATTTATCCTGCAGAGAAGGAAGAATATGAATTTGGTTGTTCATATAGCTCGGCACCTTGAGCTCAGAGATTATATCCATTCTGTTGTCTTAGGACTTCTTCCTTTTATCAAAAAGGGATTGATAGCTCGGTTAGTAGACCAGATATTCCAAACAAGTCAATCTCTTCAAGCTCAAGGTTGGAATTATGGGATGCAGGTACTATATGTTACTTTTCTATCTGTGACTCGATATGACATGAAACAATTATCAGCTTTTGATTCATGCATGCATGGGTCTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0033554 GO:0050896 GO:0051716

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04914 ko05100 ko05131 ko05166 map04110 map04111 map04113 map04114 map04914 map05100 map05131 map05166

Pfam Domains

Protein Families

HORMA

Protein Analysis

137

Amino Acids

15.87

Weight (kDa)

7.79

Isoelectric Point (pI)

54.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16590 AT1G16590
fragaria_vesca	FvH4_3g15651 FvH4_3g15651 FvH4_3g15651 FvH4_3g15651
malus_domestica	MD05G1220700.v1.1 MD10G1203100.v1.1 MD17G1180100.v1.1
prunus_persica	Prupe.4G139000_v2.0.a1 Prupe.4G139100_v2.0.a1 Prupe.4G141800_v2.0.a1 Prupe.4G141800_v2.0.a1
pyrus_communis	pycom10g17370
rosa_chinensis	RchiOBHm_Chr5g0026311 RchiOBHm_Chr5g0026331
rosa_multiflora	Rmu_sc0002636.1_g000001 Rmu_sc0003053.1_g000001 Rmu_sc0005764.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053030
rosa_rugosa	Rorug05G0092300 Rorug05G0092300
rosa_samantha	Rh1AG339700 Rh4CG111000 Rh4CG215700 Rh5AG185300 Rh5BG182300 Rh5BG336900 Rh5CG201700 Rh5DG183900 Rh5DG184000 Rh6AG348500 Rh6DG077100
rosa_wichuraiana	Rw5G016820 Rw6G010600 Rw7G039410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	316
AccB1I	GGYRCC	1 cut(s)	183
AccBSI	CCGCTC	1 cut(s)	74
AccI	GTMKAC	1 cut(s)	267
AciI	CCGC	1 cut(s)	72
AcsI	RAATTY	2 cut(s)	131, 160
AfaI	GTAC	3 cut(s)	29, 55, 330
AgsI	TTSAA	2 cut(s)	11, 299
AjnI	CCWGG	1 cut(s)	21
AjuI	GAANNNNNNNTTGG	2 cut(s)	146, 178
AluBI	AGCT	6 cut(s)	179, 193, 257, 302, 383, 411
AluI	AGCT	6 cut(s)	179, 193, 257, 302, 383, 411
Alw21I	GWGCWC	1 cut(s)	195
AlwNI	CAGNNNCTG	1 cut(s)	82
ApoI	RAATTY	2 cut(s)	131, 160
BanI	GGYRCC	1 cut(s)	183
BanII	GRGCYC	1 cut(s)	195
Bbv12I	GWGCWC	1 cut(s)	195
BciT130I	CCWGG	1 cut(s)	23
BfaI	CTAG	2 cut(s)	408, 412
BfmI	CTRYAG	1 cut(s)	140
BfuAI	ACCTGC	1 cut(s)	316
Bme1390I	CCNGG	1 cut(s)	23
BmiI	GGNNCC	1 cut(s)	185
BmrFI	CCNGG	1 cut(s)	23
BmsI	GCATC	2 cut(s)	31, 312
BpuEI	CTTGAG	2 cut(s)	209, 288
BseBI	CCWGG	1 cut(s)	23
BseGI	GGATG	1 cut(s)	327
BseMII	CTCAG	2 cut(s)	89, 208
BshNI	GGYRCC	1 cut(s)	183
BsiHKAI	GWGCWC	1 cut(s)	195
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp1407I	TGTACA	1 cut(s)	53
BspACI	CCGC	1 cut(s)	72
BspCNI	CTCAG	2 cut(s)	88, 207
BspLI	GGNNCC	1 cut(s)	185
BspMAI	CTGCAG	1 cut(s)	144
BspMI	ACCTGC	1 cut(s)	316
BspT107I	GGYRCC	1 cut(s)	183
BsrBI	CCGCTC	1 cut(s)	74
BsrGI	TGTACA	1 cut(s)	53
Bst2UI	CCWGG	1 cut(s)	23
Bst6I	CTCTTC	1 cut(s)	300
BstAUI	TGTACA	1 cut(s)	53
BstC8I	GCNNGC	1 cut(s)	398
BstDEI	CTNAG	3 cut(s)	75, 194, 220
BstF5I	GGATG	1 cut(s)	327
BstMWI	GCNNNNNNNGC	1 cut(s)	190
BstNI	CCWGG	1 cut(s)	23
BstNSI	RCATGY	1 cut(s)	400
BstSCI	CCNGG	1 cut(s)	21
BstSFI	CTRYAG	1 cut(s)	140
BtsCI	GGATG	1 cut(s)	327
BveI	ACCTGC	1 cut(s)	316
Cac8I	GCNNGC	1 cut(s)	398
CaiI	CAGNNNCTG	1 cut(s)	82
CsiI	ACCWGGT	1 cut(s)	21
Csp6I	GTAC	3 cut(s)	28, 54, 329
CviAII	CATG	4 cut(s)	367, 393, 397, 401
CviJI	RGCY	6 cut(s)	179, 193, 257, 302, 383, 411
CviKI_1	RGCY	6 cut(s)	179, 193, 257, 302, 383, 411
CviQI	GTAC	3 cut(s)	28, 54, 329
DdeI	CTNAG	3 cut(s)	75, 194, 220
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
Ecl136II	GAGCTC	1 cut(s)	193
Eco24I	GRGCYC	1 cut(s)	195
Eco53kI	GAGCTC	1 cut(s)	193
EcoICRI	GAGCTC	1 cut(s)	193
EcoRII	CCWGG	1 cut(s)	21
EcoT22I	ATGCAT	2 cut(s)	398, 402
EcoT38I	GRGCYC	1 cut(s)	195
FaeI	CATG	4 cut(s)	370, 396, 400, 404
FatI	CATG	4 cut(s)	366, 392, 396, 400
FblI	GTMKAC	1 cut(s)	267
FokI	GGATG	1 cut(s)	334
FriOI	GRGCYC	1 cut(s)	195
FspBI	CTAG	2 cut(s)	408, 412
Hin1II	CATG	4 cut(s)	370, 396, 400, 404
HinfI	GANTC	3 cut(s)	79, 355, 389
Hpy166II	GTNNAC	2 cut(s)	28, 268
Hpy188I	TCNGA	2 cut(s)	78, 197
Hpy8I	GTNNAC	2 cut(s)	28, 268
HpyAV	CCTTC	1 cut(s)	141
HpyCH4V	TGCA	6 cut(s)	37, 44, 142, 325, 396, 400
HpyF10VI	GCNNNNNNNGC	1 cut(s)	190
HpyF3I	CTNAG	3 cut(s)	75, 194, 220
Hsp92II	CATG	4 cut(s)	370, 396, 400, 404
LpnPI	CCDG	6 cut(s)	8, 35, 68, 152, 284, 311
LweI	GCATC	2 cut(s)	31, 312
MabI	ACCWGGT	1 cut(s)	21
MaeI	CTAG	2 cut(s)	408, 412
MaeIII	GTNAC	2 cut(s)	337, 352
MbiI	CCGCTC	1 cut(s)	74
MboII	GAAGA	3 cut(s)	163, 221, 287
MhlI	GDGCHC	1 cut(s)	195
MluCI	AATT	4 cut(s)	131, 160, 313, 374
MlyI	GAGTC	1 cut(s)	349
MmeI	TCCRAC	1 cut(s)	290
MnlI	CCTC	2 cut(s)	91, 133
Mph1103I	ATGCAT	2 cut(s)	398, 402
MspR9I	CCNGG	1 cut(s)	23
MvaI	CCWGG	1 cut(s)	23
MwoI	GCNNNNNNNGC	1 cut(s)	190
NlaIII	CATG	4 cut(s)	370, 396, 400, 404
NlaIV	GGNNCC	1 cut(s)	185
NmeAIII	GCCGAG	1 cut(s)	160
NmuCI	GTSAC	1 cut(s)	352
NsiI	ATGCAT	2 cut(s)	398, 402
NspI	RCATGY	1 cut(s)	400
PaeI	GCATGC	1 cut(s)	400
PfeI	GAWTC	2 cut(s)	79, 389
PleI	GAGTC	1 cut(s)	349
PpsI	GAGTC	1 cut(s)	349
Psp124BI	GAGCTC	1 cut(s)	195
Psp6I	CCWGG	1 cut(s)	21
PspGI	CCWGG	1 cut(s)	21
PspN4I	GGNNCC	1 cut(s)	185
PstI	CTGCAG	1 cut(s)	144
PstNI	CAGNNNCTG	1 cut(s)	82
RsaI	GTAC	3 cut(s)	29, 55, 330
RsaNI	GTAC	3 cut(s)	28, 54, 329
SacI	GAGCTC	1 cut(s)	195
SchI	GAGTC	1 cut(s)	349
ScrFI	CCNGG	1 cut(s)	23
SduI	GDGCHC	1 cut(s)	195
SexAI	ACCWGGT	1 cut(s)	21
SfaNI	GCATC	2 cut(s)	31, 312
SfcI	CTRYAG	1 cut(s)	140
SmlI	CTYRAG	2 cut(s)	188, 303
SmoI	CTYRAG	2 cut(s)	188, 303
SphI	GCATGC	1 cut(s)	400
Sse9I	AATT	4 cut(s)	131, 160, 313, 374
SsiI	CCGC	1 cut(s)	72
SspMI	CTAG	2 cut(s)	408, 412
SstI	GAGCTC	1 cut(s)	195
StyD4I	CCNGG	1 cut(s)	21
TaqI	TCGA	1 cut(s)	358
TasI	AATT	4 cut(s)	131, 160, 313, 374
TatI	WGTACW	1 cut(s)	53
TfiI	GAWTC	2 cut(s)	79, 389
TseFI	GTSAC	1 cut(s)	352
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	6 cut(s)	17, 81, 161, 173, 381, 383
XapI	RAATTY	2 cut(s)	131, 160
XceI	RCATGY	1 cut(s)	400
XmiI	GTMKAC	1 cut(s)	267
XspI	CTAG	2 cut(s)	408, 412
Zsp2I	ATGCAT	2 cut(s)	398, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.