Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003409

Physical Location & Seq

Genomic Coordinates Reverse (-)

57335423 .. 57337454

Gene Structure 2032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG339700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGTCGTCGCTTGCCAAGCCTTCTCTCACTGCCTCCTCCGCTCCTAGATCCGCCTACCCCAACTTCCTTGCTAACCTGTGCGCAATTGCACGCACCCCTTACCGTCCTGTCAAAGCAGACCACCACCTCTCCATGGGAGCATGTGTGGAAGCCGCGCAAGTTGTTATCGGAGATGCATGTCCTTGTCAGTGTGGACGGCGTAGTTGGGCCTGGGCTACTTCGATTTGGTGTCGGCAACACAGTCAAGATGAAACCGCTCAGATTCTGGTTGAGTTCTTGGAGGTGGCAATACAATCAATCATTTTCCTCAAAGGAATTTATCCTGCAGGTTCTGTTGAGAGAAGGAAGAATATGAATTTGGTTGTTCATATAGCTCGGCACCTTGAGCTCAGAGATTATATACATTCTGCTGTCTCAGGATTTCTTCCTTTTATCAAAAAGGAGGGTAGCCAATTCAGAAAGCAAAGAGGTGGAGATGAAGAACGTGGTAGCGAGATCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0033554 GO:0050896 GO:0051716

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04914 ko05100 ko05131 ko05166 map04110 map04111 map04113 map04114 map04914 map05100 map05131 map05166

Pfam Domains

Protein Families

HORMA

Protein Analysis

167

Amino Acids

18.54

Weight (kDa)

9.0

Isoelectric Point (pI)

51.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16590 AT1G16590
fragaria_vesca	FvH4_3g15651 FvH4_3g15651 FvH4_3g15651 FvH4_3g15651
malus_domestica	MD05G1220700.v1.1 MD10G1203100.v1.1 MD17G1180100.v1.1
prunus_persica	Prupe.4G139000_v2.0.a1 Prupe.4G139100_v2.0.a1 Prupe.4G141800_v2.0.a1 Prupe.4G141800_v2.0.a1
pyrus_communis	pycom10g17370
rosa_chinensis	RchiOBHm_Chr5g0026311 RchiOBHm_Chr5g0026331
rosa_multiflora	Rmu_sc0002636.1_g000001 Rmu_sc0003053.1_g000001 Rmu_sc0005764.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053030
rosa_rugosa	Rorug05G0092300 Rorug05G0092300
rosa_samantha	Rh1AG339700 Rh4CG111000 Rh4CG215700 Rh5AG185300 Rh5BG182300 Rh5BG336900 Rh5CG201700 Rh5DG183900 Rh5DG184000 Rh6AG348500 Rh6DG077100
rosa_wichuraiana	Rw5G016820 Rw6G010600 Rw7G039410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	82
Acc36I	ACCTGC	1 cut(s)	317
AccB1I	GGYRCC	1 cut(s)	378
AccBSI	CCGCTC	2 cut(s)	41, 257
AccII	CGCG	1 cut(s)	155
AciI	CCGC	4 cut(s)	39, 51, 153, 255
AclWI	GGATC	1 cut(s)	42
AcsI	RAATTY	2 cut(s)	315, 355
AfiI	CCNNNNNNNGG	1 cut(s)	133
AjnI	CCWGG	1 cut(s)	209
AjuI	GAANNNNNNNTTGG	2 cut(s)	341, 373
AluBI	AGCT	2 cut(s)	374, 388
AluI	AGCT	2 cut(s)	374, 388
Alw21I	GWGCWC	1 cut(s)	390
Alw26I	GTCTC	1 cut(s)	418
AlwI	GGATC	1 cut(s)	42
AlwNI	CAGNNNCTG	2 cut(s)	265, 332
AoxI	GGCC	1 cut(s)	207
ApoI	RAATTY	2 cut(s)	315, 355
AspLEI	GCGC	2 cut(s)	83, 157
AspS9I	GGNCC	1 cut(s)	207
BanI	GGYRCC	1 cut(s)	378
BanII	GRGCYC	1 cut(s)	390
Bbv12I	GWGCWC	1 cut(s)	390
BceAI	ACGGC	1 cut(s)	212
BciT130I	CCWGG	1 cut(s)	211
BcoDI	GTCTC	1 cut(s)	418
BfaI	CTAG	1 cut(s)	45
BfmI	CTRYAG	1 cut(s)	324
BfuAI	ACCTGC	1 cut(s)	317
BisI	GCNGC	1 cut(s)	153
BlsI	GCNGC	1 cut(s)	154
Bme1390I	CCNGG	1 cut(s)	211
BmgT120I	GGNCC	1 cut(s)	207
BmiI	GGNNCC	1 cut(s)	380
BmrFI	CCNGG	1 cut(s)	211
BmsI	GCATC	1 cut(s)	163
BpuEI	CTTGAG	1 cut(s)	404
BsaJI	CCNNGG	2 cut(s)	132, 210
BsaXI	ACNNNNNCTCC	4 cut(s)	113, 129, 143, 159
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
BseBI	CCWGG	1 cut(s)	211
BseDI	CCNNGG	2 cut(s)	132, 210
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMII	CTCAG	3 cut(s)	272, 403, 429
BseRI	GAGGAG	1 cut(s)	25
Bsh1236I	CGCG	1 cut(s)	155
BshFI	GGCC	1 cut(s)	209
BshNI	GGYRCC	1 cut(s)	378
BsiHKAI	GWGCWC	1 cut(s)	390
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmAI	GTCTC	1 cut(s)	418
BsnI	GGCC	1 cut(s)	209
Bsp1286I	GDGCHC	1 cut(s)	390
Bsp143I	GATC	2 cut(s)	47, 495
Bsp19I	CCATGG	1 cut(s)	132
BspACI	CCGC	4 cut(s)	39, 51, 153, 255
BspANI	GGCC	1 cut(s)	209
BspCNI	CTCAG	3 cut(s)	271, 402, 428
BspFNI	CGCG	1 cut(s)	155
BspLI	GGNNCC	1 cut(s)	380
BspMAI	CTGCAG	1 cut(s)	328
BspMI	ACCTGC	1 cut(s)	317
BspPI	GGATC	1 cut(s)	42
BspT107I	GGYRCC	1 cut(s)	378
BsrBI	CCGCTC	2 cut(s)	41, 257
BssECI	CCNNGG	2 cut(s)	132, 210
BssMI	GATC	2 cut(s)	47, 495
BssT1I	CCWWGG	1 cut(s)	132
Bst2UI	CCWGG	1 cut(s)	211
Bst4CI	ACNGT	2 cut(s)	104, 242
BstC8I	GCNNGC	2 cut(s)	12, 91
BstDEI	CTNAG	3 cut(s)	258, 389, 415
BstDSI	CCRYGG	1 cut(s)	132
BstFNI	CGCG	1 cut(s)	155
BstHHI	GCGC	2 cut(s)	83, 157
BstKTI	GATC	2 cut(s)	50, 498
BstMAI	GTCTC	1 cut(s)	418
BstMBI	GATC	2 cut(s)	47, 495
BstMWI	GCNNNNNNNGC	3 cut(s)	16, 38, 385
BstNI	CCWGG	1 cut(s)	211
BstNSI	RCATGY	2 cut(s)	144, 180
BstSCI	CCNGG	1 cut(s)	209
BstSFI	CTRYAG	1 cut(s)	324
BstUI	CGCG	1 cut(s)	155
BstX2I	RGATCY	1 cut(s)	47
BstYI	RGATCY	1 cut(s)	47
BsuRI	GGCC	1 cut(s)	209
BtgI	CCRYGG	1 cut(s)	132
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	2 cut(s)	27, 194
BveI	ACCTGC	1 cut(s)	317
Cac8I	GCNNGC	2 cut(s)	12, 91
CaiI	CAGNNNCTG	2 cut(s)	265, 332
CfoI	GCGC	2 cut(s)	83, 157
Cfr13I	GGNCC	1 cut(s)	207
CviAII	CATG	3 cut(s)	133, 141, 177
CviJI	RGCY	7 cut(s)	19, 152, 209, 215, 374, 388, 450
CviKI_1	RGCY	7 cut(s)	19, 152, 209, 215, 374, 388, 450
DdeI	CTNAG	3 cut(s)	258, 389, 415
DpnI	GATC	2 cut(s)	49, 497
DpnII	GATC	2 cut(s)	47, 495
EciI	GGCGGA	1 cut(s)	40
Ecl136II	GAGCTC	1 cut(s)	388
Eco130I	CCWWGG	1 cut(s)	132
Eco24I	GRGCYC	1 cut(s)	390
Eco53kI	GAGCTC	1 cut(s)	388
EcoICRI	GAGCTC	1 cut(s)	388
EcoRII	CCWGG	1 cut(s)	209
EcoT14I	CCWWGG	1 cut(s)	132
EcoT22I	ATGCAT	1 cut(s)	178
EcoT38I	GRGCYC	1 cut(s)	390
ErhI	CCWWGG	1 cut(s)	132
FaeI	CATG	3 cut(s)	136, 144, 180
FaiI	YATR	8 cut(s)	134, 142, 178, 353, 369, 371, 399, 401
FatI	CATG	3 cut(s)	132, 140, 176
Fnu4HI	GCNGC	1 cut(s)	153
FriOI	GRGCYC	1 cut(s)	390
Fsp4HI	GCNGC	1 cut(s)	153
FspBI	CTAG	1 cut(s)	45
FspI	TGCGCA	1 cut(s)	82
GlaI	GCGC	2 cut(s)	82, 156
GluI	GCNGC	1 cut(s)	153
HaeIII	GGCC	1 cut(s)	209
HhaI	GCGC	2 cut(s)	83, 157
Hin1II	CATG	3 cut(s)	136, 144, 180
Hin6I	GCGC	2 cut(s)	81, 155
HinP1I	GCGC	2 cut(s)	81, 155
HinfI	GANTC	1 cut(s)	262
Hpy166II	GTNNAC	1 cut(s)	194
Hpy188I	TCNGA	4 cut(s)	170, 261, 392, 458
Hpy188III	TCNNGA	2 cut(s)	245, 417
Hpy8I	GTNNAC	1 cut(s)	194
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	2 cut(s)	30, 336
HpyCH4III	ACNGT	2 cut(s)	104, 242
HpyCH4IV	ACGT	1 cut(s)	484
HpyCH4V	TGCA	3 cut(s)	89, 176, 326
HpyF10VI	GCNNNNNNNGC	3 cut(s)	16, 38, 385
HpyF3I	CTNAG	3 cut(s)	258, 389, 415
HpySE526I	ACGT	1 cut(s)	484
Hsp92II	CATG	3 cut(s)	136, 144, 180
HspAI	GCGC	2 cut(s)	81, 155
Kzo9I	GATC	2 cut(s)	47, 495
LmnI	GCTCC	2 cut(s)	46, 137
LpnPI	CCDG	8 cut(s)	89, 120, 196, 223, 251, 312, 336, 402
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	1 cut(s)	45
MaeII	ACGT	1 cut(s)	484
MalI	GATC	2 cut(s)	49, 497
MbiI	CCGCTC	2 cut(s)	41, 257
MboI	GATC	2 cut(s)	47, 495
MboII	GAAGA	3 cut(s)	358, 416, 491
MfeI	CAATTG	1 cut(s)	84
MflI	RGATCY	1 cut(s)	47
MhlI	GDGCHC	1 cut(s)	390
MluCI	AATT	5 cut(s)	84, 315, 355, 452, 499
MnlI	CCTC	7 cut(s)	43, 46, 137, 274, 317, 436, 461
Mph1103I	ATGCAT	1 cut(s)	178
MseI	TTAA	1 cut(s)	502
MspR9I	CCNGG	1 cut(s)	211
MunI	CAATTG	1 cut(s)	84
MvaI	CCWGG	1 cut(s)	211
MvnI	CGCG	1 cut(s)	155
MwoI	GCNNNNNNNGC	3 cut(s)	16, 38, 385
NcoI	CCATGG	1 cut(s)	132
NdeII	GATC	2 cut(s)	47, 495
NlaIII	CATG	3 cut(s)	136, 144, 180
NlaIV	GGNNCC	1 cut(s)	380
NmeAIII	GCCGAG	1 cut(s)	355
NsbI	TGCGCA	1 cut(s)	82
NsiI	ATGCAT	1 cut(s)	178
NspI	RCATGY	2 cut(s)	144, 180
PfeI	GAWTC	1 cut(s)	262
PkrI	GCNGC	1 cut(s)	154
Psp124BI	GAGCTC	1 cut(s)	390
Psp6I	CCWGG	1 cut(s)	209
PspGI	CCWGG	1 cut(s)	209
PspN4I	GGNNCC	1 cut(s)	380
PspPI	GGNCC	1 cut(s)	207
PstI	CTGCAG	1 cut(s)	328
PstNI	CAGNNNCTG	2 cut(s)	265, 332
PsuI	RGATCY	1 cut(s)	47
SacI	GAGCTC	1 cut(s)	390
SaqAI	TTAA	1 cut(s)	502
SatI	GCNGC	1 cut(s)	153
Sau3AI	GATC	2 cut(s)	47, 495
Sau96I	GGNCC	1 cut(s)	207
SbfI	CCTGCAGG	1 cut(s)	328
ScrFI	CCNGG	1 cut(s)	211
SdaI	CCTGCAGG	1 cut(s)	328
SduI	GDGCHC	1 cut(s)	390
SetI	ASST	9 cut(s)	78, 129, 285, 331, 376, 384, 390, 472, 487
SfaNI	GCATC	1 cut(s)	163
SfcI	CTRYAG	1 cut(s)	324
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
Sse8387I	CCTGCAGG	1 cut(s)	328
Sse9I	AATT	5 cut(s)	84, 315, 355, 452, 499
SsiI	CCGC	4 cut(s)	39, 51, 153, 255
SspMI	CTAG	1 cut(s)	45
SstI	GAGCTC	1 cut(s)	390
StyD4I	CCNGG	1 cut(s)	209
StyI	CCWWGG	1 cut(s)	132
TaaI	ACNGT	2 cut(s)	104, 242
TaiI	ACGT	1 cut(s)	487
TaqI	TCGA	1 cut(s)	221
TasI	AATT	5 cut(s)	84, 315, 355, 452, 499
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	1 cut(s)	262
Tru1I	TTAA	1 cut(s)	502
Tru9I	TTAA	1 cut(s)	502
TscAI	CASTG	2 cut(s)	34, 194
TspDTI	ATGAA	4 cut(s)	264, 356, 368, 492
TspRI	CASTG	2 cut(s)	34, 194
XapI	RAATTY	2 cut(s)	315, 355
XceI	RCATGY	2 cut(s)	144, 180
XspI	CTAG	1 cut(s)	45
Zsp2I	ATGCAT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.