Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003409

Physical Location & Seq

Genomic Coordinates Reverse (-)

8771776 .. 8778429

Gene Structure 6654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG077100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGCCTCCCGGTTTGGAGATCGAGAAGGTTAGTGTTGGTGAACTAATTTTTATTCAAGCCAAGGAGTGGCTTACTAGTTTTAACAGCGCCAACATTAGGTCAGTTTCCAATGTTTCTTCTACTGCATGTGACCATAAGGGAGGAAATGATGAGCTGGGCGCTGTTGTTAGAGACGATAATGGAAGCTTCCAACGAACAGGGGATGAGGATAAGTGGGTTTATTTCTTTGTGCTTATAATTCAAATTGAATATTGCACAAATGAAACGGCTCAGATTTTGGTTGAGTTCTTGGAGGTGGCAATACAATCAATCATTTTCCTCAAAGGAATTTATCCTGCAGGTTCTATTGAGAGAAGGAAGAATATGAATTTGGTTGTTCATATAGCTCGGCACCTTGAGCTCAGAGATTATATACATTCTGCTGTCTCAGGACTTCTTCCTTTTATCAAAAAGATGGCTAATTTATCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0033554 GO:0050896 GO:0051716

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04914 ko05100 ko05131 ko05166 map04110 map04111 map04113 map04114 map04914 map05100 map05131 map05166

Pfam Domains

Protein Families

HORMA

Protein Analysis

157

Amino Acids

17.57

Weight (kDa)

5.55

Isoelectric Point (pI)

51.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16590 AT1G16590
fragaria_vesca	FvH4_3g15651 FvH4_3g15651 FvH4_3g15651 FvH4_3g15651
malus_domestica	MD05G1220700.v1.1 MD10G1203100.v1.1 MD17G1180100.v1.1
prunus_persica	Prupe.4G139000_v2.0.a1 Prupe.4G139100_v2.0.a1 Prupe.4G141800_v2.0.a1 Prupe.4G141800_v2.0.a1
pyrus_communis	pycom10g17370
rosa_chinensis	RchiOBHm_Chr5g0026311 RchiOBHm_Chr5g0026331
rosa_multiflora	Rmu_sc0002636.1_g000001 Rmu_sc0003053.1_g000001 Rmu_sc0005764.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053030
rosa_rugosa	Rorug05G0092300 Rorug05G0092300
rosa_samantha	Rh1AG339700 Rh4CG111000 Rh4CG215700 Rh5AG185300 Rh5BG182300 Rh5BG336900 Rh5CG201700 Rh5DG183900 Rh5DG184000 Rh6AG348500 Rh6DG077100
rosa_wichuraiana	Rw5G016820 Rw6G010600 Rw7G039410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	236
Acc36I	ACCTGC	1 cut(s)	329
AccB1I	GGYRCC	1 cut(s)	390
AccB7I	CCANNNNNTGG	1 cut(s)	66
AcsI	RAATTY	2 cut(s)	327, 367
AfiI	CCNNNNNNNGG	2 cut(s)	66, 96
AgsI	TTSAA	3 cut(s)	56, 242, 248
AhlI	ACTAGT	1 cut(s)	74
AjuI	GAANNNNNNNTTGG	2 cut(s)	353, 385
AluBI	AGCT	4 cut(s)	154, 186, 386, 400
AluI	AGCT	4 cut(s)	154, 186, 386, 400
Alw21I	GWGCWC	1 cut(s)	402
Alw26I	GTCTC	2 cut(s)	165, 430
ApoI	RAATTY	2 cut(s)	327, 367
AspLEI	GCGC	2 cut(s)	89, 161
AsuC2I	CCSGG	1 cut(s)	9
AsuHPI	GGTGA	1 cut(s)	50
BanI	GGYRCC	1 cut(s)	390
BanII	GRGCYC	1 cut(s)	402
Bbv12I	GWGCWC	1 cut(s)	402
BccI	CCATC	1 cut(s)	448
BceAI	ACGGC	1 cut(s)	282
BcnI	CCSGG	1 cut(s)	9
BcoDI	GTCTC	2 cut(s)	165, 430
BcuI	ACTAGT	1 cut(s)	74
BfaI	CTAG	1 cut(s)	75
BfmI	CTRYAG	1 cut(s)	336
BfoI	RGCGCY	2 cut(s)	90, 162
BfuAI	ACCTGC	1 cut(s)	329
Bme1390I	CCNGG	1 cut(s)	9
BmiI	GGNNCC	1 cut(s)	392
BmrFI	CCNGG	1 cut(s)	9
BpuEI	CTTGAG	1 cut(s)	416
BpuMI	CCSGG	1 cut(s)	9
BsaJI	CCNNGG	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	2 cut(s)	66, 96
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	1 cut(s)	208
BseLI	CCNNNNNNNGG	2 cut(s)	66, 96
BseMII	CTCAG	3 cut(s)	284, 415, 441
BseYI	CCCAGC	1 cut(s)	154
BshNI	GGYRCC	1 cut(s)	390
BsiHKAI	GWGCWC	1 cut(s)	402
BsiSI	CCGG	1 cut(s)	9
BslI	CCNNNNNNNGG	2 cut(s)	66, 96
BsmAI	GTCTC	2 cut(s)	165, 430
BsmBI	CGTCTC	1 cut(s)	165
Bsp1286I	GDGCHC	1 cut(s)	402
Bsp143I	GATC	1 cut(s)	18
BspCNI	CTCAG	3 cut(s)	283, 414, 440
BspLI	GGNNCC	1 cut(s)	392
BspMAI	CTGCAG	1 cut(s)	340
BspMI	ACCTGC	1 cut(s)	329
BspT107I	GGYRCC	1 cut(s)	390
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	1 cut(s)	18
BssT1I	CCWWGG	1 cut(s)	60
BstDEI	CTNAG	3 cut(s)	270, 401, 427
BstF5I	GGATG	1 cut(s)	208
BstH2I	RGCGCY	2 cut(s)	90, 162
BstHHI	GCGC	2 cut(s)	89, 161
BstKTI	GATC	1 cut(s)	21
BstMAI	GTCTC	2 cut(s)	165, 430
BstMBI	GATC	1 cut(s)	18
BstMWI	GCNNNNNNNGC	1 cut(s)	397
BstNSI	RCATGY	1 cut(s)	129
BstSCI	CCNGG	1 cut(s)	7
BstSFI	CTRYAG	1 cut(s)	336
BtsCI	GGATG	1 cut(s)	208
BveI	ACCTGC	1 cut(s)	329
CfoI	GCGC	2 cut(s)	89, 161
CviAII	CATG	1 cut(s)	126
CviJI	RGCY	8 cut(s)	59, 70, 154, 186, 269, 386, 400, 458
CviKI_1	RGCY	8 cut(s)	59, 70, 154, 186, 269, 386, 400, 458
DdeI	CTNAG	3 cut(s)	270, 401, 427
DpnI	GATC	1 cut(s)	20
DpnII	GATC	1 cut(s)	18
Ecl136II	GAGCTC	1 cut(s)	400
Eco130I	CCWWGG	1 cut(s)	60
Eco24I	GRGCYC	1 cut(s)	402
Eco53kI	GAGCTC	1 cut(s)	400
EcoICRI	GAGCTC	1 cut(s)	400
EcoT14I	CCWWGG	1 cut(s)	60
EcoT38I	GRGCYC	1 cut(s)	402
ErhI	CCWWGG	1 cut(s)	60
Esp3I	CGTCTC	1 cut(s)	165
FaeI	CATG	1 cut(s)	129
FaiI	YATR	8 cut(s)	127, 135, 236, 365, 381, 383, 411, 413
FatI	CATG	1 cut(s)	125
FokI	GGATG	1 cut(s)	215
FriOI	GRGCYC	1 cut(s)	402
FspBI	CTAG	1 cut(s)	75
GlaI	GCGC	2 cut(s)	88, 160
GsaI	CCCAGC	1 cut(s)	158
HaeII	RGCGCY	2 cut(s)	90, 162
HapII	CCGG	1 cut(s)	9
HhaI	GCGC	2 cut(s)	89, 161
Hin1II	CATG	1 cut(s)	129
Hin6I	GCGC	2 cut(s)	87, 159
HinP1I	GCGC	2 cut(s)	87, 159
HindIII	AAGCTT	1 cut(s)	184
HpaII	CCGG	1 cut(s)	9
HphI	GGTGA	1 cut(s)	50
Hpy166II	GTNNAC	1 cut(s)	41
Hpy188I	TCNGA	2 cut(s)	273, 404
Hpy188III	TCNNGA	2 cut(s)	22, 429
Hpy8I	GTNNAC	1 cut(s)	41
HpyAV	CCTTC	2 cut(s)	19, 348
HpyCH4V	TGCA	3 cut(s)	125, 255, 338
HpyF10VI	GCNNNNNNNGC	1 cut(s)	397
HpyF3I	CTNAG	3 cut(s)	270, 401, 427
Hsp92II	CATG	1 cut(s)	129
HspAI	GCGC	2 cut(s)	87, 159
Kzo9I	GATC	1 cut(s)	18
LpnPI	CCDG	6 cut(s)	22, 140, 183, 324, 348, 414
MaeI	CTAG	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	1 cut(s)	20
MboI	GATC	1 cut(s)	18
MboII	GAAGA	3 cut(s)	108, 370, 428
MhlI	GDGCHC	1 cut(s)	402
MluCI	AATT	6 cut(s)	45, 237, 243, 327, 367, 460
MmeI	TCCRAC	1 cut(s)	214
MnlI	CCTC	5 cut(s)	15, 134, 199, 286, 329
MseI	TTAA	2 cut(s)	81, 472
MspI	CCGG	1 cut(s)	9
MspR9I	CCNGG	1 cut(s)	9
MwoI	GCNNNNNNNGC	1 cut(s)	397
NciI	CCSGG	1 cut(s)	9
NdeII	GATC	1 cut(s)	18
NlaIII	CATG	1 cut(s)	129
NlaIV	GGNNCC	1 cut(s)	392
NmeAIII	GCCGAG	1 cut(s)	367
NmuCI	GTSAC	1 cut(s)	128
NspI	RCATGY	1 cut(s)	129
PflMI	CCANNNNNTGG	1 cut(s)	66
PsiI	TTATAA	1 cut(s)	236
Psp124BI	GAGCTC	1 cut(s)	402
PspFI	CCCAGC	1 cut(s)	154
PspN4I	GGNNCC	1 cut(s)	392
PstI	CTGCAG	1 cut(s)	340
SacI	GAGCTC	1 cut(s)	402
SaqAI	TTAA	2 cut(s)	81, 472
Sau3AI	GATC	1 cut(s)	18
SbfI	CCTGCAGG	1 cut(s)	340
ScrFI	CCNGG	1 cut(s)	9
SdaI	CCTGCAGG	1 cut(s)	340
SduI	GDGCHC	1 cut(s)	402
SetI	ASST	9 cut(s)	30, 101, 156, 188, 297, 343, 388, 396, 402
SfcI	CTRYAG	1 cut(s)	336
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
SpeI	ACTAGT	1 cut(s)	74
Sse8387I	CCTGCAGG	1 cut(s)	340
Sse9I	AATT	6 cut(s)	45, 237, 243, 327, 367, 460
SspI	AATATT	1 cut(s)	251
SspMI	CTAG	1 cut(s)	75
SstI	GAGCTC	1 cut(s)	402
StyD4I	CCNGG	1 cut(s)	7
StyI	CCWWGG	1 cut(s)	60
TaqI	TCGA	1 cut(s)	21
TasI	AATT	6 cut(s)	45, 237, 243, 327, 367, 460
Tru1I	TTAA	2 cut(s)	81, 472
Tru9I	TTAA	2 cut(s)	81, 472
TseFI	GTSAC	1 cut(s)	128
Tsp45I	GTSAC	1 cut(s)	128
TspDTI	ATGAA	3 cut(s)	276, 368, 380
Van91I	CCANNNNNTGG	1 cut(s)	66
XapI	RAATTY	2 cut(s)	327, 367
XceI	RCATGY	1 cut(s)	129
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.