AT1G17960

threonine--tRNA ligase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
6180865 .. 6183806
2942 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G17960.2

Sequence Viewer

Length: 1377 bp
ATGGCGAATAATCATCATCCCAAGGATGAGGCTTATCTCTCATCCGTCATCCCCAAGCGTATCAGGCTCTTCGAGGAAATCCAAGCCGAGCAGCTTGAGCAGCTTCAATCTCGGCCACACGATCCAATCAAGATTACTCTTCTCCCCGACGGTATCGAGAAAGAAGGAAGGAGATGGGAGACCTCTCCAATGGACATCGCAGTGCAGATTTCTAAGGGTTTAGCAAAATCTGCTCTGGTTTCTTCGGTTAATCATGTCTTGTGGGACATGAATAGGCCCCTGGAAGGTGATTGTTCCTTAGAGATTTTCGGATTTGACAGCGACCAAGGCCGTAATACTTTCTGGCATTCTAGCGCCCACATTCTAGGCCAGGCTCTCGAGCAGGAGTATGGATGCAAGCTATGTATTGGACCCTGCGAACCCAGAGATGAAGGCTTCTATTACGATTCACTTTATTATGGCGAGCTGGGATTAAACGACAATCATTTTCCAAACATCGAAGCAAAATTACCCATTAGAATGGCCGAATTTGGAGTGTTACACCGAAATGAGGACAGTGGAGCACTTGGTGGAATGACCCGTGTCCGACGGTTTGTACAGGATGATGCACACATATTCTGTAGAGTGGATCAGGTTGAGGAAGAAGTGAAGGGTGTGTTGGATTTCATTGACTATGTTTACAGAATATTTGGGTTTACCTATGAACTAACGCTTTCAACGAGGCCAAAGGATCACATTGGAGATTTGGAAACATGGGCTAAAGCTGAAAATGATCTTGAAAAAGCTCTAGATGATTTTGGAAAGCCATGGGTTATAAAGGAAGGAGACGGTGCATTTTATGGCCCAAAGATAGACATAACAGTGTCTGATGCCAGGAATAGGAAATTCCAGTGTGCTACTATACAGCTTGATTTTCAACTTCCGGCTTGCTTCAAACTGAAATACCTAAGTGAAAAAAACGAAATGGAGGCACCTGTGATGATACATAGTGCGGTGTTGGGATCTATTGAGCGTATGTTTGCCATATTGTTGGAACATTACAAAGGAATTTGGCCCTTCTGGCTTAGTCCCCGCCAGGCCATAGTTTGCTCTCTTTCAGAGGATTGTAGTTCCTATGCCAAACAGGTACAAAAACAGATTAATGAAGTCGGGTACTATGTTGATATTGATGAAAGTGACAGAAGCCTCCGTAAAAAGGTGGCAGATGCTCGGGATGCACCATACAACTACATACTGGTCGTAGGTCAAAAAGAGGTTGCAACTGGACAGGTGACAGTTCGGCTCAGAGAGGACCCTGAAGGCCGTAAAGACTTGCCAGAGATGAGCATCGAAAGTTTGCTTGATGAATTCAAGTTCAAGACAGTCAACTTCCTCTGA

Protein Analysis

458

Amino Acids

52.44

Weight (kDa)

5.09

Isoelectric Point (pI)

45.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TGS PF02824 43 - 96 3.2e-13 TGS domain
tRNA-synt_2b PF00587 92 - 274 2.2e-35 tRNA synthetase class II core domain (G, H, P, S and T)
HGTP_anticodon PF03129 286 - 378 3.2e-16 Anticodon binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 815
AccB1I GGYRCC 1 cut(s) 970
AciI CCGC 2 cut(s) 992, 1072
AclWI GGATC 4 cut(s) 116, 636, 738, 1009
AcoI YGGCCR 2 cut(s) 113, 522
AcsI RAATTY 4 cut(s) 527, 884, 1047, 1346
AcuI CTGAAG 1 cut(s) 1317
AdeI CACNNNGTG 1 cut(s) 569
AfaI GTAC 3 cut(s) 597, 1128, 1154
AfiI CCNNNNNNNGG 4 cut(s) 284, 550, 879, 1195
AgsI TTSAA 7 cut(s) 107, 717, 779, 917, 934, 1351, 1357
AjnI CCWGG 4 cut(s) 279, 369, 872, 1074
AjuI GAANNNNNNNTTGG 2 cut(s) 641, 673
AluBI AGCT 7 cut(s) 94, 103, 400, 466, 764, 785, 907
AluI AGCT 7 cut(s) 94, 103, 400, 466, 764, 785, 907
Alw21I GWGCWC 1 cut(s) 565
Alw26I GTCTC 2 cut(s) 173, 819
AlwI GGATC 4 cut(s) 116, 636, 738, 1009
AlwNI CAGNNNCTG 1 cut(s) 866
Ama87I CYCGRG 2 cut(s) 377, 1209
ApeKI GCWGC 2 cut(s) 91, 100
ApoI RAATTY 4 cut(s) 527, 884, 1047, 1346
AseI ATTAAT 1 cut(s) 1140
AspLEI GCGC 1 cut(s) 356
AspS9I GGNCC 5 cut(s) 276, 410, 842, 1053, 1291
AsuHPI GGTGA 2 cut(s) 299, 1282
AvaI CYCGRG 2 cut(s) 377, 1209
AvaII GGWCC 2 cut(s) 410, 1291
BanI GGYRCC 1 cut(s) 970
BarI GAAGNNNNNNTAC 2 cut(s) 492, 524
Bbv12I GWGCWC 1 cut(s) 565
BbvI GCAGC 2 cut(s) 103, 112
BccI CCATC 1 cut(s) 168
BceAI ACGGC 2 cut(s) 315, 1287
BciT130I CCWGG 4 cut(s) 281, 371, 874, 1076
BcoDI GTCTC 2 cut(s) 173, 819
BfaI CTAG 3 cut(s) 351, 365, 788
BfmI CTRYAG 1 cut(s) 619
BfoI RGCGCY 1 cut(s) 357
BglI GCCNNNNNGGC 1 cut(s) 1060
BisI GCNGC 2 cut(s) 92, 101
BlsI GCNGC 2 cut(s) 93, 102
Bme1390I CCNGG 4 cut(s) 281, 371, 874, 1076
Bme18I GGWCC 2 cut(s) 410, 1291
BmeT110I CYCGRG 2 cut(s) 377, 1209
BmgT120I GGNCC 5 cut(s) 276, 410, 842, 1053, 1291
BmiI GGNNCC 4 cut(s) 278, 412, 972, 1293
BmrFI CCNGG 4 cut(s) 281, 371, 874, 1076
BmsI GCATC 6 cut(s) 383, 595, 859, 1195, 1204, 1335
BoxI GACNNNNGTC 1 cut(s) 581
BpuEI CTTGAG 1 cut(s) 116
BsaBI GATNNNNATC 1 cut(s) 1325
BsaI GGTCTC 1 cut(s) 173
BsaJI CCNNGG 4 cut(s) 21, 279, 325, 806
Bsc4I CCNNNNNNNGG 4 cut(s) 284, 550, 879, 1195
Bse1I ACTGG 3 cut(s) 889, 1239, 1267
Bse8I GATNNNNATC 1 cut(s) 1325
BseBI CCWGG 4 cut(s) 281, 371, 874, 1076
BseDI CCNNGG 4 cut(s) 21, 279, 325, 806
BseGI GGATG 7 cut(s) 16, 31, 41, 48, 398, 607, 1219
BseJI GATNNNNATC 1 cut(s) 1325
BseLI CCNNNNNNNGG 4 cut(s) 284, 550, 879, 1195
BseMII CTCAG 1 cut(s) 1297
BseNI ACTGG 3 cut(s) 889, 1239, 1267
BseXI GCAGC 2 cut(s) 103, 112
BseYI CCCAGC 1 cut(s) 466
BsgI GTGCAG 1 cut(s) 224
BshNI GGYRCC 1 cut(s) 970
BsiHKAI GWGCWC 1 cut(s) 565
BsiHKCI CYCGRG 2 cut(s) 377, 1209
BsiSI CCGG 1 cut(s) 923
BslFI GGGAC 2 cut(s) 278, 1053
BslI CCNNNNNNNGG 4 cut(s) 284, 550, 879, 1195
BsmAI GTCTC 2 cut(s) 173, 819
BsmBI CGTCTC 1 cut(s) 819
BsmFI GGGAC 2 cut(s) 278, 1053
BsmI GAATGC 1 cut(s) 346
Bso31I GGTCTC 1 cut(s) 173
BsoBI CYCGRG 2 cut(s) 377, 1209
Bsp1286I GDGCHC 1 cut(s) 565
Bsp1407I TGTACA 1 cut(s) 595
Bsp143I GATC 5 cut(s) 121, 628, 730, 772, 1001
Bsp19I CCATGG 1 cut(s) 806
BspACI CCGC 2 cut(s) 992, 1072
BspCNI CTCAG 1 cut(s) 1296
BspLI GGNNCC 4 cut(s) 278, 412, 972, 1293
BspPI GGATC 4 cut(s) 116, 636, 738, 1009
BspQI GCTCTTC 1 cut(s) 74
BspT107I GGYRCC 1 cut(s) 970
BspTNI GGTCTC 1 cut(s) 173
BsrGI TGTACA 1 cut(s) 595
BsrI ACTGG 3 cut(s) 889, 1239, 1267
BssECI CCNNGG 4 cut(s) 21, 279, 325, 806
BssMI GATC 5 cut(s) 121, 628, 730, 772, 1001
BssT1I CCWWGG 3 cut(s) 21, 325, 806
Bst2UI CCWGG 4 cut(s) 281, 371, 874, 1076
Bst4CI ACNGT 7 cut(s) 152, 557, 591, 830, 862, 1276, 1363
Bst6I CTCTTC 2 cut(s) 74, 144
BstAPI GCANNNNNTGC 1 cut(s) 230
BstAUI TGTACA 1 cut(s) 595
BstC8I GCNNGC 3 cut(s) 398, 464, 928
BstDEI CTNAG 5 cut(s) 213, 298, 947, 1064, 1283
BstDSI CCRYGG 1 cut(s) 806
BstF5I GGATG 7 cut(s) 16, 31, 41, 48, 398, 607, 1219
BstH2I RGCGCY 1 cut(s) 357
BstHHI GCGC 1 cut(s) 356
BstKTI GATC 5 cut(s) 124, 631, 733, 775, 1004
BstMAI GTCTC 2 cut(s) 173, 819
BstMBI GATC 5 cut(s) 121, 628, 730, 772, 1001
BstMWI GCNNNNNNNGC 7 cut(s) 64, 97, 100, 230, 327, 1060, 1214
BstNI CCWGG 4 cut(s) 281, 371, 874, 1076
BstPAI GACNNNNGTC 1 cut(s) 581
BstSCI CCNGG 4 cut(s) 279, 369, 872, 1074
BstSFI CTRYAG 1 cut(s) 619
BstV1I GCAGC 2 cut(s) 103, 112
BstX2I RGATCY 1 cut(s) 1001
BstXI CCANNNNNNTGG 2 cut(s) 520, 1030
BstYI RGATCY 1 cut(s) 1001
BtgI CCRYGG 1 cut(s) 806
BtgZI GCGATG 1 cut(s) 181
BtsCI GGATG 7 cut(s) 16, 31, 41, 48, 398, 607, 1219
BtsI GCAGTG 1 cut(s) 207
BtsIMutI CAGTG 4 cut(s) 207, 562, 867, 896
Cac8I GCNNGC 3 cut(s) 398, 464, 928
CaiI CAGNNNCTG 1 cut(s) 866
CfoI GCGC 1 cut(s) 356
Cfr13I GGNCC 5 cut(s) 276, 410, 842, 1053, 1291
Csp6I GTAC 3 cut(s) 596, 1127, 1153
CviAII CATG 4 cut(s) 254, 268, 753, 807
CviQI GTAC 3 cut(s) 596, 1127, 1153
DdeI CTNAG 5 cut(s) 213, 298, 947, 1064, 1283
DpnI GATC 5 cut(s) 123, 630, 732, 774, 1003
DpnII GATC 5 cut(s) 121, 628, 730, 772, 1001
DraIII CACNNNGTG 1 cut(s) 569
EaeI YGGCCR 2 cut(s) 113, 522
Eam1104I CTCTTC 2 cut(s) 74, 144
EarI CTCTTC 2 cut(s) 74, 144
Eco130I CCWWGG 3 cut(s) 21, 325, 806
Eco31I GGTCTC 1 cut(s) 173
Eco47I GGWCC 2 cut(s) 410, 1291
Eco57I CTGAAG 1 cut(s) 1317
Eco88I CYCGRG 2 cut(s) 377, 1209
EcoO109I RGGNCCY 2 cut(s) 276, 1291
EcoRI GAATTC 1 cut(s) 1346
EcoRII CCWGG 4 cut(s) 279, 369, 872, 1074
EcoT14I CCWWGG 3 cut(s) 21, 325, 806
ErhI CCWWGG 3 cut(s) 21, 325, 806
Esp3I CGTCTC 1 cut(s) 819
FaeI CATG 4 cut(s) 257, 271, 756, 810
FaqI GGGAC 2 cut(s) 278, 1053
FatI CATG 4 cut(s) 253, 267, 752, 806
FauI CCCGC 1 cut(s) 1079
Fnu4HI GCNGC 2 cut(s) 92, 101
FokI GGATG 7 cut(s) 3, 28, 35, 38, 405, 614, 1226
Fsp4HI GCNGC 2 cut(s) 92, 101
FspBI CTAG 3 cut(s) 351, 365, 788
GlaI GCGC 1 cut(s) 355
GluI GCNGC 2 cut(s) 92, 101
GsaI CCCAGC 1 cut(s) 470
HaeII RGCGCY 1 cut(s) 357
HapII CCGG 1 cut(s) 923
HhaI GCGC 1 cut(s) 356
Hin1II CATG 4 cut(s) 257, 271, 756, 810
Hin6I GCGC 1 cut(s) 354
HinP1I GCGC 1 cut(s) 354
HincII GTYRAC 1 cut(s) 1366
HindII GTYRAC 1 cut(s) 1366
HinfI GANTC 1 cut(s) 446
HpaII CCGG 1 cut(s) 923
HphI GGTGA 2 cut(s) 299, 1282
Hpy166II GTNNAC 3 cut(s) 679, 696, 1366
Hpy188I TCNGA 6 cut(s) 311, 587, 868, 1099, 1286, 1376
Hpy188III TCNNGA 7 cut(s) 130, 157, 377, 776, 788, 1211, 1357
Hpy8I GTNNAC 3 cut(s) 679, 696, 1366
Hpy99I CGWCG 2 cut(s) 152, 591
HpyAV CCTTC 8 cut(s) 158, 162, 278, 425, 643, 815, 1066, 1292
HpyCH4III ACNGT 7 cut(s) 152, 557, 591, 830, 862, 1276, 1363
HpyCH4V TGCA 6 cut(s) 205, 396, 608, 833, 1217, 1259
HpyF10VI GCNNNNNNNGC 7 cut(s) 64, 97, 100, 230, 327, 1060, 1214
HpyF3I CTNAG 5 cut(s) 213, 298, 947, 1064, 1283
Hsp92II CATG 4 cut(s) 257, 271, 756, 810
HspAI GCGC 1 cut(s) 354
Kzo9I GATC 5 cut(s) 121, 628, 730, 772, 1001
LguI GCTCTTC 1 cut(s) 74
LmnI GCTCC 1 cut(s) 560
Lsp1109I GCAGC 2 cut(s) 103, 112
LweI GCATC 6 cut(s) 383, 595, 859, 1195, 1204, 1335
MaeI CTAG 3 cut(s) 351, 365, 788
MaeIII GTNAC 3 cut(s) 537, 1175, 1270
MalI GATC 5 cut(s) 123, 630, 732, 774, 1003
MboI GATC 5 cut(s) 121, 628, 730, 772, 1001
MboII GAAGA 4 cut(s) 61, 131, 234, 653
MflI RGATCY 1 cut(s) 1001
MhlI GDGCHC 1 cut(s) 565
MluCI AATT 5 cut(s) 506, 527, 884, 1047, 1346
MmeI TCCRAC 3 cut(s) 610, 639, 1011
MseI TTAA 3 cut(s) 249, 473, 1140
MslI CAYNNNNRTG 4 cut(s) 200, 518, 546, 860
MspI CCGG 1 cut(s) 923
MspR9I CCNGG 4 cut(s) 281, 371, 874, 1076
Mva1269I GAATGC 1 cut(s) 346
MvaI CCWGG 4 cut(s) 281, 371, 874, 1076
MwoI GCNNNNNNNGC 7 cut(s) 64, 97, 100, 230, 327, 1060, 1214
NcoI CCATGG 1 cut(s) 806
NdeII GATC 5 cut(s) 121, 628, 730, 772, 1001
NlaIII CATG 4 cut(s) 257, 271, 756, 810
NlaIV GGNNCC 4 cut(s) 278, 412, 972, 1293
NmeAIII GCCGAG 2 cut(s) 91, 112
NmuCI GTSAC 2 cut(s) 1175, 1270
PaeR7I CTCGAG 1 cut(s) 377
PciSI GCTCTTC 1 cut(s) 74
PcsI WCGNNNNNNNCGW 1 cut(s) 716
PctI GAATGC 1 cut(s) 346
PfeI GAWTC 1 cut(s) 446
PkrI GCNGC 2 cut(s) 93, 102
PpuMI RGGWCCY 1 cut(s) 1291
PshAI GACNNNNGTC 1 cut(s) 581
PshBI ATTAAT 1 cut(s) 1140
PsiI TTATAA 1 cut(s) 815
Psp5II RGGWCCY 1 cut(s) 1291
Psp6I CCWGG 4 cut(s) 279, 369, 872, 1074
PspFI CCCAGC 1 cut(s) 466
PspGI CCWGG 4 cut(s) 279, 369, 872, 1074
PspN4I GGNNCC 4 cut(s) 278, 412, 972, 1293
PspPI GGNCC 5 cut(s) 276, 410, 842, 1053, 1291
PspPPI RGGWCCY 1 cut(s) 1291
PstNI CAGNNNCTG 1 cut(s) 866
PsuI RGATCY 1 cut(s) 1001
RsaI GTAC 3 cut(s) 597, 1128, 1154
RsaNI GTAC 3 cut(s) 596, 1127, 1153
RseI CAYNNNNRTG 4 cut(s) 200, 518, 546, 860
SapI GCTCTTC 1 cut(s) 74
SaqAI TTAA 3 cut(s) 249, 473, 1140
SatI GCNGC 2 cut(s) 92, 101
Sau3AI GATC 5 cut(s) 121, 628, 730, 772, 1001
Sau96I GGNCC 5 cut(s) 276, 410, 842, 1053, 1291
ScrFI CCNGG 4 cut(s) 281, 371, 874, 1076
SduI GDGCHC 1 cut(s) 565
SfaNI GCATC 6 cut(s) 383, 595, 859, 1195, 1204, 1335
SfcI CTRYAG 1 cut(s) 619
Sfr274I CTCGAG 1 cut(s) 377
SinI GGWCC 2 cut(s) 410, 1291
SlaI CTCGAG 1 cut(s) 377
SmiMI CAYNNNNRTG 4 cut(s) 200, 518, 546, 860
SmlI CTYRAG 2 cut(s) 95, 377
SmoI CTYRAG 2 cut(s) 95, 377
Sse9I AATT 5 cut(s) 506, 527, 884, 1047, 1346
SsiI CCGC 2 cut(s) 992, 1072
SspI AATATT 1 cut(s) 687
SspMI CTAG 3 cut(s) 351, 365, 788
StyD4I CCNGG 4 cut(s) 279, 369, 872, 1074
StyI CCWWGG 3 cut(s) 21, 325, 806
TaaI ACNGT 7 cut(s) 152, 557, 591, 830, 862, 1276, 1363
TaqI TCGA 5 cut(s) 72, 156, 378, 498, 1329
TasI AATT 5 cut(s) 506, 527, 884, 1047, 1346
TatI WGTACW 1 cut(s) 595
TfiI GAWTC 1 cut(s) 446
Tru1I TTAA 3 cut(s) 249, 473, 1140
Tru9I TTAA 3 cut(s) 249, 473, 1140
TscAI CASTG 4 cut(s) 207, 562, 867, 896
TseFI GTSAC 2 cut(s) 1175, 1270
TseI GCWGC 2 cut(s) 91, 100
Tsp45I GTSAC 2 cut(s) 1175, 1270
TspDTI ATGAA 7 cut(s) 284, 444, 655, 717, 1158, 1185, 1359
TspGWI ACGGA 2 cut(s) 34, 1178
TspRI CASTG 4 cut(s) 207, 562, 867, 896
VpaK11BI GGWCC 2 cut(s) 410, 1291
VspI ATTAAT 1 cut(s) 1140
XapI RAATTY 4 cut(s) 527, 884, 1047, 1346
XbaI TCTAGA 1 cut(s) 787
XhoI CTCGAG 1 cut(s) 377
XspI CTAG 3 cut(s) 351, 365, 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.