Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004989

Physical Location & Seq

Genomic Coordinates Forward (+)

31618936 .. 31623024

Gene Structure 4089 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008520

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGAAGAAGGATTATCGTAATTGGAGATGGTGCACGGTAGAGCACCAAATCCGGGCTGAGCTTGGTTGGCCGGACCGACCCTCCTTGGATCTTATCCCTGTGTCGCGTCTACGTAATCGATTCCAGCCCGATCCACCAAATGGGTCCTGCCCCATCTCCTCCACCCATCGTCGTCGATTCCACCACCGCCTAGATGAAATCCGAGAGCTTCGGGGCCCAGACACAGGCCTGTGGAGTAAAGGAACTAGAGTGGAGGAGAAAATGAAATCTGGTTTGCCTCTTGATTTGCAGTTTTCTAGTTGTCACCCAAGCATTCAAGAAGTGAATTGTATGTTCAGGTTATTTGAGCTGCCGATTGGCTATGACTTTGACTATGATGAATACCACAGGGATGGTGCATTTTACATACCAAAGATAGATACCAATGTATCTGATGCATTGAACATGAAGTTTAAGTGTGCAACATTACAGGGAAAAATACTTTTGTTGCTGCTTGATGTTCAGCTACCTACTCGCTTTGAGCTGTATTACTCAGCAGAGGGTGAAGAAGGCAAGAAGGAGGCACCTGTTATGATACACATAGCCATTTTCGGTTCTGTTGAGCGTTCACTAGCAATAACAGTGGCAAATCCAAGTGATCTTGTAAAAGTTAGACTTCGAGCTGAGAGAAAATTGCCACCAGGCGCACCAAGGCGCTATTCTGGCACATTGAATGCGTCTTCCACCATCTTGAGACAGGAAGGAGTTGGGGTTCTCTGGACTGGAATTGGACCTAACATTGCACGTAATGCTATGATTAATGCTGCTGAACTAGCCAGATATGATCAAGTGAAGCAGACACTTCTGAAAATTCTCGGGTTAAAGGCAATGTTGTCACTCATCTTTTTGCTGGTCTGGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006865 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009506 GO:0009507 GO:0009536 GO:0009853 GO:0009987 GO:0015075 GO:0015171 GO:0015318 GO:0015672 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022857 GO:0030054 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1903825 GO:1905039 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

301

Amino Acids

34.26

Weight (kDa)

9.25

Isoelectric Point (pI)

48.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	195 - 283	3.2e-15	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17960 AT1G17960
malus_domestica	MD15G1401700.v1.1 MD15G1402000.v1.1
rosa_chinensis	RchiOBHm_Chr4g0444231
rosa_laevigata	RLG00000005339 RLG00000005847 RLG00000008520 RLG00000020302
rosa_multiflora	Rmu_sc0000016.1_g000006 Rmu_sc0000987.1_g000022 Rmu_sc0014698.1_g000003
rosa_roxburghii	Rroxscaffold_3G00219500 Rroxscaffold_5G00384800
rosa_rugosa	Rorug03G0334500 Rorug07G0196800
rosa_samantha	Rh1BG152700 Rh1CG027000 Rh1DG185100 Rh2BG464200 Rh4AG158400 Rh4BG163900 Rh4CG184100 Rh4DG152900 Rh4DG153000 Rh5CG279500 Rh6BG190300 Rh7CG027100 Rh7DG026600 Rh7DG335900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	562
AccB7I	CCANNNNNTGG	1 cut(s)	140
AccI	GTMKAC	1 cut(s)	109
AccII	CGCG	1 cut(s)	106
AciI	CCGC	1 cut(s)	187
AclWI	GGATC	2 cut(s)	96, 125
AcoI	YGGCCR	1 cut(s)	68
AcsI	RAATTY	1 cut(s)	849
AfiI	CCNNNNNNNGG	3 cut(s)	52, 140, 224
AgsI	TTSAA	3 cut(s)	317, 442, 712
AjnI	CCWGG	1 cut(s)	679
AjuI	GAANNNNNNNTTGG	2 cut(s)	682, 714
AloI	GAACNNNNNNTCC	2 cut(s)	735, 767
AluBI	AGCT	6 cut(s)	61, 208, 349, 505, 523, 662
AluI	AGCT	6 cut(s)	61, 208, 349, 505, 523, 662
Alw21I	GWGCWC	2 cut(s)	35, 45
Alw26I	GTCTC	1 cut(s)	727
Alw44I	GTGCAC	1 cut(s)	31
AlwI	GGATC	2 cut(s)	96, 125
Ama87I	CYCGRG	1 cut(s)	854
AoxI	GGCC	3 cut(s)	68, 214, 226
ApaI	GGGCCC	1 cut(s)	218
ApaLI	GTGCAC	1 cut(s)	31
ApeKI	GCWGC	3 cut(s)	349, 490, 803
ApoI	RAATTY	1 cut(s)	849
AseI	ATTAAT	1 cut(s)	798
AspLEI	GCGC	2 cut(s)	686, 696
AspS9I	GGNCC	5 cut(s)	73, 144, 214, 215, 770
AsuC2I	CCSGG	1 cut(s)	53
AsuHPI	GGTGA	2 cut(s)	296, 554
AvaI	CYCGRG	1 cut(s)	854
AvaII	GGWCC	3 cut(s)	73, 144, 770
BaeGI	GKGCMC	2 cut(s)	35, 218
BaeI	ACNNNNGTAYC	4 cut(s)	411, 411, 444, 444
BanI	GGYRCC	1 cut(s)	562
BanII	GRGCYC	1 cut(s)	218
BbsI	GAAGAC	1 cut(s)	711
Bbv12I	GWGCWC	2 cut(s)	35, 45
BbvI	GCAGC	3 cut(s)	336, 477, 790
BccI	CCATC	5 cut(s)	21, 161, 174, 386, 734
BciT130I	CCWGG	1 cut(s)	681
BclI	TGATCA	1 cut(s)	823
BcnI	CCSGG	1 cut(s)	53
BcoDI	GTCTC	1 cut(s)	727
BfaI	CTAG	5 cut(s)	191, 246, 297, 611, 812
BfoI	RGCGCY	1 cut(s)	697
BisI	GCNGC	3 cut(s)	350, 491, 804
BlpI	GCTNAGC	1 cut(s)	57
BlsI	GCNGC	3 cut(s)	351, 492, 805
Bme1390I	CCNGG	2 cut(s)	53, 681
Bme18I	GGWCC	3 cut(s)	73, 144, 770
BmeT110I	CYCGRG	1 cut(s)	854
BmgT120I	GGNCC	5 cut(s)	73, 144, 214, 215, 770
BmiI	GGNNCC	4 cut(s)	145, 215, 216, 564
BmrFI	CCNGG	2 cut(s)	53, 681
BmsI	GCATC	1 cut(s)	424
BpiI	GAAGAC	1 cut(s)	711
Bpu1102I	GCTNAGC	1 cut(s)	57
BpuEI	CTTGAG	1 cut(s)	751
BpuMI	CCSGG	1 cut(s)	53
Bsa29I	ATCGAT	1 cut(s)	118
BsaAI	YACGTR	2 cut(s)	113, 785
BsaJI	CCNNGG	2 cut(s)	84, 689
BsaXI	ACNNNNNCTCC	4 cut(s)	65, 95, 735, 765
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 140, 224
Bse1I	ACTGG	1 cut(s)	766
Bse3DI	GCAATG	2 cut(s)	777, 873
BseBI	CCWGG	1 cut(s)	681
BseCI	ATCGAT	1 cut(s)	118
BseDI	CCNNGG	2 cut(s)	84, 689
BseGI	GGATG	1 cut(s)	397
BseLI	CCNNNNNNNGG	3 cut(s)	52, 140, 224
BseMI	GCAATG	2 cut(s)	777, 873
BseMII	CTCAG	3 cut(s)	48, 546, 654
BseNI	ACTGG	1 cut(s)	766
BseRI	GAGGAG	2 cut(s)	148, 269
BseSI	GKGCMC	2 cut(s)	35, 218
BseXI	GCAGC	3 cut(s)	336, 477, 790
Bsh1236I	CGCG	1 cut(s)	106
BshFI	GGCC	3 cut(s)	70, 216, 228
BshNI	GGYRCC	1 cut(s)	562
BshVI	ATCGAT	1 cut(s)	118
BsiHKAI	GWGCWC	2 cut(s)	35, 45
BsiHKCI	CYCGRG	1 cut(s)	854
BsiSI	CCGG	2 cut(s)	52, 71
BslI	CCNNNNNNNGG	3 cut(s)	52, 140, 224
BsmAI	GTCTC	1 cut(s)	727
BsmI	GAATGC	2 cut(s)	312, 718
BsnI	GGCC	3 cut(s)	70, 216, 228
BsoBI	CYCGRG	1 cut(s)	854
Bsp120I	GGGCCC	1 cut(s)	214
Bsp1286I	GDGCHC	3 cut(s)	35, 45, 218
Bsp143I	GATC	4 cut(s)	88, 130, 637, 823
Bsp1720I	GCTNAGC	1 cut(s)	57
BspACI	CCGC	1 cut(s)	187
BspANI	GGCC	3 cut(s)	70, 216, 228
BspCNI	CTCAG	3 cut(s)	49, 545, 655
BspDI	ATCGAT	1 cut(s)	118
BspFNI	CGCG	1 cut(s)	106
BspLI	GGNNCC	4 cut(s)	145, 215, 216, 564
BspPI	GGATC	2 cut(s)	96, 125
BspT107I	GGYRCC	1 cut(s)	562
BsrDI	GCAATG	2 cut(s)	777, 873
BsrI	ACTGG	1 cut(s)	766
BssECI	CCNNGG	2 cut(s)	84, 689
BssMI	GATC	4 cut(s)	88, 130, 637, 823
BssT1I	CCWWGG	2 cut(s)	84, 689
Bst2UI	CCWGG	1 cut(s)	681
Bst4CI	ACNGT	2 cut(s)	37, 622
BstAPI	GCANNNNNTGC	1 cut(s)	788
BstBAI	YACGTR	2 cut(s)	113, 785
BstDEI	CTNAG	3 cut(s)	57, 532, 663
BstF5I	GGATG	1 cut(s)	397
BstFNI	CGCG	1 cut(s)	106
BstH2I	RGCGCY	1 cut(s)	697
BstHHI	GCGC	2 cut(s)	686, 696
BstKTI	GATC	4 cut(s)	91, 133, 640, 826
BstMAI	GTCTC	1 cut(s)	727
BstMBI	GATC	4 cut(s)	88, 130, 637, 823
BstMWI	GCNNNNNNNGC	4 cut(s)	67, 702, 788, 812
BstNI	CCWGG	1 cut(s)	681
BstSCI	CCNGG	2 cut(s)	51, 679
BstSLI	GKGCMC	2 cut(s)	35, 218
BstSNI	TACGTA	1 cut(s)	113
BstUI	CGCG	1 cut(s)	106
BstV1I	GCAGC	3 cut(s)	336, 477, 790
BstV2I	GAAGAC	1 cut(s)	711
BstX2I	RGATCY	1 cut(s)	88
BstXI	CCANNNNNNTGG	1 cut(s)	392
BstYI	RGATCY	1 cut(s)	88
Bsu15I	ATCGAT	1 cut(s)	118
BsuRI	GGCC	3 cut(s)	70, 216, 228
BsuTUI	ATCGAT	1 cut(s)	118
BtsCI	GGATG	1 cut(s)	397
BtsIMutI	CAGTG	1 cut(s)	627
CfoI	GCGC	2 cut(s)	686, 696
Cfr13I	GGNCC	5 cut(s)	73, 144, 214, 215, 770
ClaI	ATCGAT	1 cut(s)	118
CpoI	CGGWCCG	1 cut(s)	73
CseI	GACGC	2 cut(s)	95, 705
CspCI	CAANNNNNGTGG	2 cut(s)	603, 638
CspI	CGGWCCG	1 cut(s)	73
CviAII	CATG	1 cut(s)	445
DdeI	CTNAG	3 cut(s)	57, 532, 663
DpnI	GATC	4 cut(s)	90, 132, 639, 825
DpnII	GATC	4 cut(s)	88, 130, 637, 823
EaeI	YGGCCR	1 cut(s)	68
Eco105I	TACGTA	1 cut(s)	113
Eco130I	CCWWGG	2 cut(s)	84, 689
Eco147I	AGGCCT	1 cut(s)	228
Eco24I	GRGCYC	1 cut(s)	218
Eco47I	GGWCC	3 cut(s)	73, 144, 770
Eco88I	CYCGRG	1 cut(s)	854
EcoO109I	RGGNCCY	2 cut(s)	144, 214
EcoRII	CCWGG	1 cut(s)	679
EcoT14I	CCWWGG	2 cut(s)	84, 689
EcoT22I	ATGCAT	1 cut(s)	439
EcoT38I	GRGCYC	1 cut(s)	218
ErhI	CCWWGG	2 cut(s)	84, 689
FaeI	CATG	1 cut(s)	448
FaiI	YATR	9 cut(s)	332, 363, 375, 407, 446, 572, 581, 794, 822
FalI	AAGNNNNNCTT	2 cut(s)	639, 671
FatI	CATG	1 cut(s)	444
FbaI	TGATCA	1 cut(s)	823
FblI	GTMKAC	1 cut(s)	109
Fnu4HI	GCNGC	3 cut(s)	350, 491, 804
FokI	GGATG	1 cut(s)	404
FriOI	GRGCYC	1 cut(s)	218
Fsp4HI	GCNGC	3 cut(s)	350, 491, 804
FspBI	CTAG	5 cut(s)	191, 246, 297, 611, 812
GlaI	GCGC	2 cut(s)	685, 695
GluI	GCNGC	3 cut(s)	350, 491, 804
HaeII	RGCGCY	1 cut(s)	697
HaeIII	GGCC	3 cut(s)	70, 216, 228
HapII	CCGG	2 cut(s)	52, 71
HgaI	GACGC	2 cut(s)	95, 705
HhaI	GCGC	2 cut(s)	686, 696
Hin1II	CATG	1 cut(s)	448
Hin6I	GCGC	2 cut(s)	684, 694
HinP1I	GCGC	2 cut(s)	684, 694
HinfI	GANTC	2 cut(s)	120, 177
HpaII	CCGG	2 cut(s)	52, 71
HphI	GGTGA	2 cut(s)	296, 554
Hpy166II	GTNNAC	3 cut(s)	33, 110, 608
Hpy188I	TCNGA	3 cut(s)	203, 433, 846
Hpy188III	TCNNGA	4 cut(s)	281, 317, 730, 757
Hpy8I	GTNNAC	3 cut(s)	33, 110, 608
Hpy99I	CGWCG	2 cut(s)	174, 177
HpyAV	CCTTC	3 cut(s)	542, 550, 734
HpyCH4III	ACNGT	2 cut(s)	37, 622
HpyCH4IV	ACGT	2 cut(s)	112, 784
HpyCH4V	TGCA	6 cut(s)	33, 289, 398, 437, 461, 782
HpyF10VI	GCNNNNNNNGC	4 cut(s)	67, 702, 788, 812
HpyF3I	CTNAG	3 cut(s)	57, 532, 663
HpySE526I	ACGT	2 cut(s)	112, 784
Hsp92II	CATG	1 cut(s)	448
HspAI	GCGC	2 cut(s)	684, 694
Ksp22I	TGATCA	1 cut(s)	823
Kzo9I	GATC	4 cut(s)	88, 130, 637, 823
Lsp1109I	GCAGC	3 cut(s)	336, 477, 790
LweI	GCATC	1 cut(s)	424
MaeI	CTAG	5 cut(s)	191, 246, 297, 611, 812
MaeII	ACGT	2 cut(s)	112, 784
MaeIII	GTNAC	2 cut(s)	302, 873
MalI	GATC	4 cut(s)	90, 132, 639, 825
MboI	GATC	4 cut(s)	88, 130, 637, 823
MboII	GAAGA	3 cut(s)	16, 557, 711
MflI	RGATCY	1 cut(s)	88
MhlI	GDGCHC	3 cut(s)	35, 45, 218
MluCI	AATT	5 cut(s)	19, 325, 671, 765, 849
MnlI	CCTC	6 cut(s)	91, 169, 247, 288, 532, 553
Mph1103I	ATGCAT	1 cut(s)	439
MseI	TTAA	3 cut(s)	453, 798, 860
MslI	CAYNNNNRTG	1 cut(s)	390
MspI	CCGG	2 cut(s)	52, 71
MspR9I	CCNGG	2 cut(s)	53, 681
Mva1269I	GAATGC	2 cut(s)	312, 718
MvaI	CCWGG	1 cut(s)	681
MvnI	CGCG	1 cut(s)	106
MwoI	GCNNNNNNNGC	4 cut(s)	67, 702, 788, 812
NciI	CCSGG	1 cut(s)	53
NdeII	GATC	4 cut(s)	88, 130, 637, 823
NlaIII	CATG	1 cut(s)	448
NlaIV	GGNNCC	4 cut(s)	145, 215, 216, 564
NmuCI	GTSAC	2 cut(s)	302, 873
NsiI	ATGCAT	1 cut(s)	439
PceI	AGGCCT	1 cut(s)	228
PctI	GAATGC	2 cut(s)	312, 718
PfeI	GAWTC	2 cut(s)	120, 177
PflMI	CCANNNNNTGG	1 cut(s)	140
PkrI	GCNGC	3 cut(s)	351, 492, 805
Ppu21I	YACGTR	2 cut(s)	113, 785
PpuMI	RGGWCCY	1 cut(s)	144
PshBI	ATTAAT	1 cut(s)	798
Psp5II	RGGWCCY	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	679
PspGI	CCWGG	1 cut(s)	679
PspN4I	GGNNCC	4 cut(s)	145, 215, 216, 564
PspOMI	GGGCCC	1 cut(s)	214
PspPI	GGNCC	5 cut(s)	73, 144, 214, 215, 770
PspPPI	RGGWCCY	1 cut(s)	144
PsuI	RGATCY	1 cut(s)	88
RseI	CAYNNNNRTG	1 cut(s)	390
Rsr2I	CGGWCCG	1 cut(s)	73
RsrII	CGGWCCG	1 cut(s)	73
SaqAI	TTAA	3 cut(s)	453, 798, 860
SatI	GCNGC	3 cut(s)	350, 491, 804
Sau3AI	GATC	4 cut(s)	88, 130, 637, 823
Sau96I	GGNCC	5 cut(s)	73, 144, 214, 215, 770
ScrFI	CCNGG	2 cut(s)	53, 681
SduI	GDGCHC	3 cut(s)	35, 45, 218
SfaNI	GCATC	1 cut(s)	424
SinI	GGWCC	3 cut(s)	73, 144, 770
SmiMI	CAYNNNNRTG	1 cut(s)	390
SmlI	CTYRAG	1 cut(s)	730
SmoI	CTYRAG	1 cut(s)	730
SnaBI	TACGTA	1 cut(s)	113
Sse9I	AATT	5 cut(s)	19, 325, 671, 765, 849
SseBI	AGGCCT	1 cut(s)	228
SsiI	CCGC	1 cut(s)	187
SspMI	CTAG	5 cut(s)	191, 246, 297, 611, 812
StuI	AGGCCT	1 cut(s)	228
StyD4I	CCNGG	2 cut(s)	51, 679
StyI	CCWWGG	2 cut(s)	84, 689
TaaI	ACNGT	2 cut(s)	37, 622
TaiI	ACGT	2 cut(s)	115, 787
TaqI	TCGA	3 cut(s)	118, 175, 658
TaqII	GACCGA	1 cut(s)	90
TasI	AATT	5 cut(s)	19, 325, 671, 765, 849
TfiI	GAWTC	2 cut(s)	120, 177
Tru1I	TTAA	3 cut(s)	453, 798, 860
Tru9I	TTAA	3 cut(s)	453, 798, 860
TscAI	CASTG	1 cut(s)	627
TseFI	GTSAC	2 cut(s)	302, 873
TseI	GCWGC	3 cut(s)	349, 490, 803
Tsp45I	GTSAC	2 cut(s)	302, 873
TspDTI	ATGAA	5 cut(s)	17, 210, 278, 393, 461
TspRI	CASTG	1 cut(s)	627
Van91I	CCANNNNNTGG	1 cut(s)	140
VneI	GTGCAC	1 cut(s)	31
VpaK11BI	GGWCC	3 cut(s)	73, 144, 770
VspI	ATTAAT	1 cut(s)	798
XapI	RAATTY	1 cut(s)	849
XmiI	GTMKAC	1 cut(s)	109
XspI	CTAG	5 cut(s)	191, 246, 297, 611, 812
Zsp2I	ATGCAT	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.