Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004989

Physical Location & Seq

Genomic Coordinates Reverse (-)

2321339 .. 2321920

Gene Structure 582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005847

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGAATTGCCCGGGGCATGGATTCATGTTCCGGCACAGAGTTCGTTCTTATAGAGGTAGTCACGTACAAATAAATGAAGGGGATGGTGCATTTTATGGACCAAAGATAGATATCAGTGTATCCGATGCATTGAACATGAAGTACAGTGTGCAACACACTACAACAGGAAAAATACTGTGGTTGCAGCTTGATTTTCAGCCTGCTGCTCGCTTTGAGCTGTATTACTCAGCAGAGGGTGAAGAAGGCAAGAGGGAGTCACATGTTATGATACACAGAGCTATTTTGGGTTCTGTCGAGCCTATGTCTCATATACTGTTGGAGCACTACAAGGGGATGCTATATACAGTTGTTCATCTCCTTCCCATGCATCTTCATCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004829 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006435 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0030312 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071944 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon TGS tRNA-synt_2b tRNA_SAD

Protein Analysis

127

Amino Acids

14.48

Weight (kDa)

7.2

Isoelectric Point (pI)

46.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17960 AT1G17960
malus_domestica	MD15G1401700.v1.1 MD15G1402000.v1.1
rosa_chinensis	RchiOBHm_Chr4g0444231
rosa_laevigata	RLG00000005339 RLG00000005847 RLG00000008520 RLG00000020302
rosa_multiflora	Rmu_sc0000016.1_g000006 Rmu_sc0000987.1_g000022 Rmu_sc0014698.1_g000003
rosa_roxburghii	Rroxscaffold_3G00219500 Rroxscaffold_5G00384800
rosa_rugosa	Rorug03G0334500 Rorug07G0196800
rosa_samantha	Rh1BG152700 Rh1CG027000 Rh1DG185100 Rh2BG464200 Rh4AG158400 Rh4BG163900 Rh4CG184100 Rh4DG152900 Rh4DG153000 Rh5CG279500 Rh6BG190300 Rh7CG027100 Rh7DG026600 Rh7DG335900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	66, 143
AfiI	CCNNNNNNNGG	1 cut(s)	17
AflIII	ACRYGT	1 cut(s)	259
AgsI	TTSAA	1 cut(s)	133
AluBI	AGCT	3 cut(s)	187, 217, 278
AluI	AGCT	3 cut(s)	187, 217, 278
Alw21I	GWGCWC	1 cut(s)	324
Alw26I	GTCTC	1 cut(s)	309
Ama87I	CYCGRG	1 cut(s)	10
ApeKI	GCWGC	2 cut(s)	184, 203
AspS9I	GGNCC	1 cut(s)	98
AsuC2I	CCSGG	2 cut(s)	11, 12
AsuHPI	GGTGA	1 cut(s)	248
AvaI	CYCGRG	1 cut(s)	10
AvaII	GGWCC	1 cut(s)	98
Bbv12I	GWGCWC	1 cut(s)	324
BbvI	GCAGC	2 cut(s)	190, 196
BccI	CCATC	1 cut(s)	77
BcgI	CGANNNNNNTGC	2 cut(s)	23, 57
BciVI	GTATCC	1 cut(s)	130
BcnI	CCSGG	2 cut(s)	11, 12
BcoDI	GTCTC	1 cut(s)	309
BfuI	GTATCC	1 cut(s)	130
BisI	GCNGC	2 cut(s)	185, 204
BlsI	GCNGC	2 cut(s)	186, 205
Bme1390I	CCNGG	2 cut(s)	11, 12
Bme18I	GGWCC	1 cut(s)	98
BmeT110I	CYCGRG	1 cut(s)	10
BmgT120I	GGNCC	1 cut(s)	98
BmrFI	CCNGG	2 cut(s)	11, 12
BmsI	GCATC	3 cut(s)	115, 324, 376
BpuMI	CCSGG	2 cut(s)	11, 12
BsaAI	YACGTR	1 cut(s)	64
BsaBI	GATNNNNATC	1 cut(s)	110
BsaJI	CCNNGG	2 cut(s)	10, 11
Bsc4I	CCNNNNNNNGG	1 cut(s)	17
Bse8I	GATNNNNATC	1 cut(s)	110
BseDI	CCNNGG	2 cut(s)	10, 11
BseGI	GGATG	2 cut(s)	88, 339
BseJI	GATNNNNATC	1 cut(s)	110
BseLI	CCNNNNNNNGG	1 cut(s)	17
BseMII	CTCAG	1 cut(s)	240
BseXI	GCAGC	2 cut(s)	190, 196
BsiHKAI	GWGCWC	1 cut(s)	324
BsiHKCI	CYCGRG	1 cut(s)	10
BsiSI	CCGG	2 cut(s)	11, 31
BslI	CCNNNNNNNGG	1 cut(s)	17
BsmAI	GTCTC	1 cut(s)	309
BsoBI	CYCGRG	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	324
BspCNI	CTCAG	1 cut(s)	239
BssECI	CCNNGG	2 cut(s)	10, 11
Bst4CI	ACNGT	4 cut(s)	146, 177, 315, 346
BstBAI	YACGTR	1 cut(s)	64
BstC8I	GCNNGC	2 cut(s)	201, 208
BstDEI	CTNAG	1 cut(s)	226
BstF5I	GGATG	2 cut(s)	88, 339
BstMAI	GTCTC	1 cut(s)	309
BstNSI	RCATGY	1 cut(s)	263
BstSCI	CCNGG	2 cut(s)	9, 10
BstV1I	GCAGC	2 cut(s)	190, 196
BsuI	GTATCC	1 cut(s)	130
BtsCI	GGATG	2 cut(s)	88, 339
BtsIMutI	CAGTG	2 cut(s)	121, 151
Cac8I	GCNNGC	2 cut(s)	201, 208
Cfr13I	GGNCC	1 cut(s)	98
Cfr9I	CCCGGG	1 cut(s)	10
Csp6I	GTAC	2 cut(s)	65, 142
CviAII	CATG	5 cut(s)	17, 25, 136, 260, 364
CviJI	RGCY	5 cut(s)	187, 199, 217, 278, 298
CviKI_1	RGCY	5 cut(s)	187, 199, 217, 278, 298
CviQI	GTAC	2 cut(s)	65, 142
DdeI	CTNAG	1 cut(s)	226
Eco32I	GATATC	1 cut(s)	112
Eco47I	GGWCC	1 cut(s)	98
Eco88I	CYCGRG	1 cut(s)	10
EcoRV	GATATC	1 cut(s)	112
EcoT22I	ATGCAT	2 cut(s)	130, 369
FaeI	CATG	5 cut(s)	20, 28, 139, 263, 367
FatI	CATG	5 cut(s)	16, 24, 135, 259, 363
Fnu4HI	GCNGC	2 cut(s)	185, 204
FokI	GGATG	2 cut(s)	95, 346
Fsp4HI	GCNGC	2 cut(s)	185, 204
GluI	GCNGC	2 cut(s)	185, 204
HapII	CCGG	2 cut(s)	11, 31
Hin1II	CATG	5 cut(s)	20, 28, 139, 263, 367
HinfI	GANTC	2 cut(s)	21, 254
HpaII	CCGG	2 cut(s)	11, 31
HphI	GGTGA	1 cut(s)	248
Hpy188I	TCNGA	1 cut(s)	124
HpyAV	CCTTC	3 cut(s)	71, 236, 368
HpyCH4III	ACNGT	4 cut(s)	146, 177, 315, 346
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	5 cut(s)	89, 128, 151, 184, 367
HpyF3I	CTNAG	1 cut(s)	226
HpySE526I	ACGT	1 cut(s)	63
Hsp92II	CATG	5 cut(s)	20, 28, 139, 263, 367
LmnI	GCTCC	1 cut(s)	319
LpnPI	CCDG	4 cut(s)	24, 44, 150, 213
Lsp1109I	GCAGC	2 cut(s)	190, 196
LweI	GCATC	3 cut(s)	115, 324, 376
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	2 cut(s)	59, 255
MboII	GAAGA	2 cut(s)	251, 362
MhlI	GDGCHC	1 cut(s)	324
MluCI	AATT	1 cut(s)	4
MlyI	GAGTC	1 cut(s)	263
MmeI	TCCRAC	1 cut(s)	297
MnlI	CCTC	3 cut(s)	47, 226, 243
Mph1103I	ATGCAT	2 cut(s)	130, 369
MspI	CCGG	2 cut(s)	11, 31
MspR9I	CCNGG	2 cut(s)	11, 12
NciI	CCSGG	2 cut(s)	11, 12
NlaIII	CATG	5 cut(s)	20, 28, 139, 263, 367
NmuCI	GTSAC	2 cut(s)	59, 255
NsiI	ATGCAT	2 cut(s)	130, 369
NspI	RCATGY	1 cut(s)	263
PciI	ACATGT	1 cut(s)	259
PfeI	GAWTC	1 cut(s)	21
PkrI	GCNGC	2 cut(s)	186, 205
PleI	GAGTC	1 cut(s)	262
PpsI	GAGTC	1 cut(s)	262
Ppu21I	YACGTR	1 cut(s)	64
PscI	ACATGT	1 cut(s)	259
PspPI	GGNCC	1 cut(s)	98
PsrI	GAACNNNNNNTAC	2 cut(s)	125, 157
RsaI	GTAC	2 cut(s)	66, 143
RsaNI	GTAC	2 cut(s)	65, 142
SatI	GCNGC	2 cut(s)	185, 204
Sau96I	GGNCC	1 cut(s)	98
SchI	GAGTC	1 cut(s)	263
ScrFI	CCNGG	2 cut(s)	11, 12
SduI	GDGCHC	1 cut(s)	324
SetI	ASST	5 cut(s)	58, 66, 189, 219, 280
SfaNI	GCATC	3 cut(s)	115, 324, 376
SinI	GGWCC	1 cut(s)	98
SmaI	CCCGGG	1 cut(s)	12
Sse9I	AATT	1 cut(s)	4
StyD4I	CCNGG	2 cut(s)	9, 10
TaaI	ACNGT	4 cut(s)	146, 177, 315, 346
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	1 cut(s)	294
TasI	AATT	1 cut(s)	4
TatI	WGTACW	1 cut(s)	141
TfiI	GAWTC	1 cut(s)	21
TscAI	CASTG	2 cut(s)	121, 151
TseFI	GTSAC	2 cut(s)	59, 255
TseI	GCWGC	2 cut(s)	184, 203
Tsp45I	GTSAC	2 cut(s)	59, 255
TspDTI	ATGAA	6 cut(s)	13, 17, 90, 152, 341, 362
TspMI	CCCGGG	1 cut(s)	10
TspRI	CASTG	2 cut(s)	121, 151
VpaK11BI	GGWCC	1 cut(s)	98
XceI	RCATGY	1 cut(s)	263
XmaI	CCCGGG	1 cut(s)	10
Zsp2I	ATGCAT	2 cut(s)	130, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.