Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0004989

Physical Location & Seq

Genomic Coordinates Reverse (-)

30426283 .. 30427139

Gene Structure 857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG152900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGTAAATGAAGGGGATGGTGCATTTTACAGACCAAAGATAGATACCAATGTATCTGATGCATTGAACATGAAGTTTCAGTGTGCAACATTACAGCTTGATTTTCAGCTACCTGCTCGCTTTGAGCTGTATTACTCAGCAGAGGGTGAAGAAGGCAAGAAGGAGGCACCTATTATGATACACATAGCCATTTTCGGTTATGTTGAGCGTATGTTTGCTATACTGCAGGAGCACTACAAGGGGAAATGTTTGCTTCCATTTGTTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004829 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006435 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0030312 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071944 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon TGS tRNA-synt_2b tRNA_SAD

Protein Analysis

89

Amino Acids

10.22

Weight (kDa)

5.26

Isoelectric Point (pI)

42.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_2b	PF00587	7 - 79	8.7e-12	tRNA synthetase class II core domain (G, H, P, S and T)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17960 AT1G17960
malus_domestica	MD15G1401700.v1.1 MD15G1402000.v1.1
rosa_chinensis	RchiOBHm_Chr4g0444231
rosa_laevigata	RLG00000005339 RLG00000005847 RLG00000008520 RLG00000020302
rosa_multiflora	Rmu_sc0000016.1_g000006 Rmu_sc0000987.1_g000022 Rmu_sc0014698.1_g000003
rosa_roxburghii	Rroxscaffold_3G00219500 Rroxscaffold_5G00384800
rosa_rugosa	Rorug03G0334500 Rorug07G0196800
rosa_samantha	Rh1BG152700 Rh1CG027000 Rh1DG185100 Rh2BG464200 Rh4AG158400 Rh4BG163900 Rh4CG184100 Rh4DG152900 Rh4DG153000 Rh5CG279500 Rh6BG190300 Rh7CG027100 Rh7DG026600 Rh7DG335900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	121
AccB1I	GGYRCC	1 cut(s)	166
AgsI	TTSAA	1 cut(s)	67
AluBI	AGCT	3 cut(s)	97, 109, 127
AluI	AGCT	3 cut(s)	97, 109, 127
Alw21I	GWGCWC	1 cut(s)	234
AsuHPI	GGTGA	1 cut(s)	158
BaeI	ACNNNNGTAYC	4 cut(s)	36, 36, 69, 69
BanI	GGYRCC	1 cut(s)	166
Bbv12I	GWGCWC	1 cut(s)	234
BccI	CCATC	1 cut(s)	11
BfmI	CTRYAG	1 cut(s)	224
BfuAI	ACCTGC	1 cut(s)	121
BmiI	GGNNCC	1 cut(s)	168
BmsI	GCATC	1 cut(s)	49
BseGI	GGATG	1 cut(s)	22
BseMII	CTCAG	1 cut(s)	150
BshNI	GGYRCC	1 cut(s)	166
BsiHKAI	GWGCWC	1 cut(s)	234
Bsp1286I	GDGCHC	1 cut(s)	234
BspCNI	CTCAG	1 cut(s)	149
BspLI	GGNNCC	1 cut(s)	168
BspMAI	CTGCAG	1 cut(s)	228
BspMI	ACCTGC	1 cut(s)	121
BspT107I	GGYRCC	1 cut(s)	166
BstC8I	GCNNGC	1 cut(s)	118
BstDEI	CTNAG	1 cut(s)	136
BstF5I	GGATG	1 cut(s)	22
BstSFI	CTRYAG	1 cut(s)	224
BtsCI	GGATG	1 cut(s)	22
BtsIMutI	CAGTG	1 cut(s)	86
BveI	ACCTGC	1 cut(s)	121
Cac8I	GCNNGC	1 cut(s)	118
CviAII	CATG	1 cut(s)	70
CviJI	RGCY	4 cut(s)	97, 109, 127, 188
CviKI_1	RGCY	4 cut(s)	97, 109, 127, 188
DdeI	CTNAG	1 cut(s)	136
EcoT22I	ATGCAT	1 cut(s)	64
FaeI	CATG	1 cut(s)	73
FaiI	YATR	8 cut(s)	71, 176, 185, 201, 212, 221, 266, 268
FatI	CATG	1 cut(s)	69
FokI	GGATG	1 cut(s)	29
Hin1II	CATG	1 cut(s)	73
HphI	GGTGA	1 cut(s)	158
Hpy188I	TCNGA	1 cut(s)	58
HpyAV	CCTTC	3 cut(s)	5, 146, 154
HpyCH4V	TGCA	4 cut(s)	23, 62, 86, 226
HpyF3I	CTNAG	1 cut(s)	136
Hsp92II	CATG	1 cut(s)	73
LmnI	GCTCC	1 cut(s)	229
LpnPI	CCDG	2 cut(s)	126, 212
LweI	GCATC	1 cut(s)	49
MboII	GAAGA	1 cut(s)	161
MhlI	GDGCHC	1 cut(s)	234
MnlI	CCTC	2 cut(s)	136, 157
Mph1103I	ATGCAT	1 cut(s)	64
NlaIII	CATG	1 cut(s)	73
NlaIV	GGNNCC	1 cut(s)	168
NsiI	ATGCAT	1 cut(s)	64
PspN4I	GGNNCC	1 cut(s)	168
PstI	CTGCAG	1 cut(s)	228
SduI	GDGCHC	1 cut(s)	234
SetI	ASST	5 cut(s)	99, 111, 115, 129, 172
SfaNI	GCATC	1 cut(s)	49
SfcI	CTRYAG	1 cut(s)	224
SgeI	CNNG	7 cut(s)	82, 110, 125, 129, 169, 239, 250
TscAI	CASTG	1 cut(s)	86
TspDTI	ATGAA	2 cut(s)	24, 86
TspRI	CASTG	1 cut(s)	86
Zsp2I	ATGCAT	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.