Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0004989

Physical Location & Seq

Genomic Coordinates Reverse (-)

5329886 .. 5332465

Gene Structure 2580 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG027000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGACAGTGGCAAATCCATCTGATCTAGTAAAAGTAAGACTTCAAGCTGAGGGAAAACTACCACCAGGCGCACCAAGGCACTATTCTGGCGCACTAAATGCGTATTCCACCATTTTGAGACAGGAGGGAGTTGGGGATCTCTGGACTGGAATTGGACCTAACATTGCATGTAATGCTATCATTAATGCTGCTGAACTAGCCAGTTATGATCAAGTGAAGCAGATACTTTTGAAAATTCCCGGGTTTAAGGACAATATTGTCACTCATCATGGTCTGGGGGCAGGTTTCTTTGCCGTCTGCCTTGGCTCACCAGTTGATGTGTACATGACAAGGACCTTTGCTACTAAATCATCTACCAGAGACTCCTCCACTTTAATAACTTTGTTACGTGACCTAGTCCCACTTCTTCCAAACATAGACTTCCAAGTTCTGCCAAGTGCCAAGCAAAGTCAACCTTGGTGTACAAGCCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006865 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009506 GO:0009507 GO:0009536 GO:0009853 GO:0009987 GO:0015075 GO:0015171 GO:0015318 GO:0015672 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022857 GO:0030054 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1903825 GO:1905039 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

157

Amino Acids

16.86

Weight (kDa)

8.49

Isoelectric Point (pI)

58.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	2 - 78	5.1e-16	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17960 AT1G17960
malus_domestica	MD15G1401700.v1.1 MD15G1402000.v1.1
rosa_chinensis	RchiOBHm_Chr4g0444231
rosa_laevigata	RLG00000005339 RLG00000005847 RLG00000008520 RLG00000020302
rosa_multiflora	Rmu_sc0000016.1_g000006 Rmu_sc0000987.1_g000022 Rmu_sc0014698.1_g000003
rosa_roxburghii	Rroxscaffold_3G00219500 Rroxscaffold_5G00384800
rosa_rugosa	Rorug03G0334500 Rorug07G0196800
rosa_samantha	Rh1BG152700 Rh1CG027000 Rh1DG185100 Rh2BG464200 Rh4AG158400 Rh4BG163900 Rh4CG184100 Rh4DG152900 Rh4DG153000 Rh5CG279500 Rh6BG190300 Rh7CG027100 Rh7DG026600 Rh7DG335900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	257
Acc36I	ACCTGC	1 cut(s)	272
AclWI	GGATC	1 cut(s)	144
AcsI	RAATTY	1 cut(s)	234
AfaI	GTAC	2 cut(s)	323, 463
AgsI	TTSAA	2 cut(s)	44, 232
AjnI	CCWGG	1 cut(s)	64
AjuI	GAANNNNNNNTTGG	2 cut(s)	67, 99
AluBI	AGCT	1 cut(s)	47
AluI	AGCT	1 cut(s)	47
Alw26I	GTCTC	2 cut(s)	112, 354
AlwI	GGATC	1 cut(s)	144
Ama87I	CYCGRG	1 cut(s)	239
ApeKI	GCWGC	1 cut(s)	188
ApoI	RAATTY	1 cut(s)	234
AseI	ATTAAT	1 cut(s)	183
AspLEI	GCGC	2 cut(s)	71, 92
AspS9I	GGNCC	2 cut(s)	155, 333
AsuC2I	CCSGG	2 cut(s)	240, 241
AsuHPI	GGTGA	1 cut(s)	300
AvaI	CYCGRG	1 cut(s)	239
AvaII	GGWCC	2 cut(s)	155, 333
BbvCI	CCTCAGC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	175
BccI	CCATC	1 cut(s)	25
BceAI	ACGGC	1 cut(s)	278
BciT130I	CCWGG	1 cut(s)	66
BclI	TGATCA	1 cut(s)	208
BcnI	CCSGG	2 cut(s)	240, 241
BcoDI	GTCTC	2 cut(s)	112, 354
BfaI	CTAG	3 cut(s)	26, 197, 395
BfuAI	ACCTGC	1 cut(s)	272
BisI	GCNGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	190
Bme1390I	CCNGG	3 cut(s)	66, 240, 241
Bme18I	GGWCC	2 cut(s)	155, 333
BmeT110I	CYCGRG	1 cut(s)	239
BmgT120I	GGNCC	2 cut(s)	155, 333
BmrFI	CCNGG	3 cut(s)	66, 240, 241
Bpu10I	CCTNAGC	1 cut(s)	48
BpuMI	CCSGG	2 cut(s)	240, 241
BsaAI	YACGTR	1 cut(s)	389
BsaJI	CCNNGG	4 cut(s)	74, 239, 301, 455
Bse1I	ACTGG	3 cut(s)	151, 201, 311
Bse3DI	GCAATG	1 cut(s)	162
BseBI	CCWGG	1 cut(s)	66
BseDI	CCNNGG	4 cut(s)	74, 239, 301, 455
BseMI	GCAATG	1 cut(s)	162
BseMII	CTCAG	1 cut(s)	39
BseNI	ACTGG	3 cut(s)	151, 201, 311
BseRI	GAGGAG	1 cut(s)	355
BseXI	GCAGC	1 cut(s)	175
BsiHKCI	CYCGRG	1 cut(s)	239
BsiSI	CCGG	1 cut(s)	240
BslFI	GGGAC	1 cut(s)	383
BsmAI	GTCTC	2 cut(s)	112, 354
BsmFI	GGGAC	1 cut(s)	383
BsoBI	CYCGRG	1 cut(s)	239
Bsp1407I	TGTACA	2 cut(s)	321, 461
Bsp143I	GATC	3 cut(s)	22, 136, 208
BspCNI	CTCAG	1 cut(s)	40
BspMI	ACCTGC	1 cut(s)	272
BspPI	GGATC	1 cut(s)	144
BsrDI	GCAATG	1 cut(s)	162
BsrGI	TGTACA	2 cut(s)	321, 461
BsrI	ACTGG	3 cut(s)	151, 201, 311
BssECI	CCNNGG	4 cut(s)	74, 239, 301, 455
BssMI	GATC	3 cut(s)	22, 136, 208
BssT1I	CCWWGG	3 cut(s)	74, 301, 455
Bst2UI	CCWGG	1 cut(s)	66
Bst4CI	ACNGT	1 cut(s)	7
BstAPI	GCANNNNNTGC	2 cut(s)	98, 173
BstAUI	TGTACA	2 cut(s)	321, 461
BstBAI	YACGTR	1 cut(s)	389
BstDEI	CTNAG	2 cut(s)	48, 471
BstHHI	GCGC	2 cut(s)	71, 92
BstKTI	GATC	3 cut(s)	25, 139, 211
BstMAI	GTCTC	2 cut(s)	112, 354
BstMBI	GATC	3 cut(s)	22, 136, 208
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 173, 197
BstNI	CCWGG	1 cut(s)	66
BstNSI	RCATGY	1 cut(s)	171
BstSCI	CCNGG	3 cut(s)	64, 238, 239
BstV1I	GCAGC	1 cut(s)	175
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
BtsIMutI	CAGTG	1 cut(s)	12
BveI	ACCTGC	1 cut(s)	272
CfoI	GCGC	2 cut(s)	71, 92
Cfr13I	GGNCC	2 cut(s)	155, 333
Cfr9I	CCCGGG	1 cut(s)	239
Csp6I	GTAC	2 cut(s)	322, 462
CviAII	CATG	3 cut(s)	168, 269, 325
CviJI	RGCY	4 cut(s)	47, 200, 306, 468
CviKI_1	RGCY	4 cut(s)	47, 200, 306, 468
CviQI	GTAC	2 cut(s)	322, 462
DdeI	CTNAG	2 cut(s)	48, 471
DpnI	GATC	3 cut(s)	24, 138, 210
DpnII	GATC	3 cut(s)	22, 136, 208
DrdI	GACNNNNNNGTC	1 cut(s)	257
DseDI	GACNNNNNNGTC	1 cut(s)	257
Eco130I	CCWWGG	3 cut(s)	74, 301, 455
Eco47I	GGWCC	2 cut(s)	155, 333
Eco88I	CYCGRG	1 cut(s)	239
EcoO109I	RGGNCCY	1 cut(s)	333
EcoRII	CCWGG	1 cut(s)	64
EcoT14I	CCWWGG	3 cut(s)	74, 301, 455
ErhI	CCWWGG	3 cut(s)	74, 301, 455
FaeI	CATG	3 cut(s)	171, 272, 328
FaiI	YATR	5 cut(s)	169, 207, 270, 326, 416
FalI	AAGNNNNNCTT	4 cut(s)	24, 56, 439, 471
FaqI	GGGAC	1 cut(s)	383
FatI	CATG	3 cut(s)	167, 268, 324
FbaI	TGATCA	1 cut(s)	208
Fnu4HI	GCNGC	1 cut(s)	189
Fsp4HI	GCNGC	1 cut(s)	189
FspBI	CTAG	3 cut(s)	26, 197, 395
GlaI	GCGC	2 cut(s)	70, 91
GluI	GCNGC	1 cut(s)	189
HapII	CCGG	1 cut(s)	240
HhaI	GCGC	2 cut(s)	71, 92
Hin1II	CATG	3 cut(s)	171, 272, 328
Hin6I	GCGC	2 cut(s)	69, 90
HinP1I	GCGC	2 cut(s)	69, 90
HincII	GTYRAC	1 cut(s)	452
HindII	GTYRAC	1 cut(s)	452
HinfI	GANTC	1 cut(s)	362
HpaII	CCGG	1 cut(s)	240
HphI	GGTGA	1 cut(s)	300
Hpy166II	GTNNAC	3 cut(s)	322, 452, 462
Hpy188I	TCNGA	1 cut(s)	22
Hpy188III	TCNNGA	1 cut(s)	142
Hpy8I	GTNNAC	3 cut(s)	322, 452, 462
HpyCH4III	ACNGT	1 cut(s)	7
HpyCH4IV	ACGT	1 cut(s)	388
HpyCH4V	TGCA	1 cut(s)	167
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 173, 197
HpyF3I	CTNAG	2 cut(s)	48, 471
HpySE526I	ACGT	1 cut(s)	388
Hsp92II	CATG	3 cut(s)	171, 272, 328
HspAI	GCGC	2 cut(s)	69, 90
Ksp22I	TGATCA	1 cut(s)	208
Kzo9I	GATC	3 cut(s)	22, 136, 208
Lsp1109I	GCAGC	1 cut(s)	175
MaeI	CTAG	3 cut(s)	26, 197, 395
MaeII	ACGT	1 cut(s)	388
MaeIII	GTNAC	3 cut(s)	259, 384, 389
MalI	GATC	3 cut(s)	24, 138, 210
MboI	GATC	3 cut(s)	22, 136, 208
MboII	GAAGA	1 cut(s)	398
MflI	RGATCY	1 cut(s)	136
MluCI	AATT	2 cut(s)	150, 234
MlyI	GAGTC	1 cut(s)	356
MnlI	CCTC	3 cut(s)	43, 118, 376
MseI	TTAA	3 cut(s)	183, 246, 374
MspI	CCGG	1 cut(s)	240
MspR9I	CCNGG	3 cut(s)	66, 240, 241
MvaI	CCWGG	1 cut(s)	66
MwoI	GCNNNNNNNGC	3 cut(s)	98, 173, 197
NciI	CCSGG	2 cut(s)	240, 241
NdeII	GATC	3 cut(s)	22, 136, 208
NlaIII	CATG	3 cut(s)	171, 272, 328
NmuCI	GTSAC	2 cut(s)	259, 389
NspI	RCATGY	1 cut(s)	171
PflFI	GACNNNGTC	1 cut(s)	395
PkrI	GCNGC	1 cut(s)	190
PleI	GAGTC	1 cut(s)	356
PpsI	GAGTC	1 cut(s)	356
Ppu21I	YACGTR	1 cut(s)	389
PpuMI	RGGWCCY	1 cut(s)	333
PshBI	ATTAAT	1 cut(s)	183
Psp5II	RGGWCCY	1 cut(s)	333
Psp6I	CCWGG	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	64
PspPI	GGNCC	2 cut(s)	155, 333
PspPPI	RGGWCCY	1 cut(s)	333
PsuI	RGATCY	1 cut(s)	136
PsyI	GACNNNGTC	1 cut(s)	395
RsaI	GTAC	2 cut(s)	323, 463
RsaNI	GTAC	2 cut(s)	322, 462
SaqAI	TTAA	3 cut(s)	183, 246, 374
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	3 cut(s)	22, 136, 208
Sau96I	GGNCC	2 cut(s)	155, 333
SchI	GAGTC	1 cut(s)	356
ScrFI	CCNGG	3 cut(s)	66, 240, 241
SetI	ASST	7 cut(s)	49, 160, 286, 338, 391, 396, 457
SinI	GGWCC	2 cut(s)	155, 333
SmaI	CCCGGG	1 cut(s)	241
Sse9I	AATT	2 cut(s)	150, 234
SspI	AATATT	1 cut(s)	256
SspMI	CTAG	3 cut(s)	26, 197, 395
StyD4I	CCNGG	3 cut(s)	64, 238, 239
StyI	CCWWGG	3 cut(s)	74, 301, 455
TaaI	ACNGT	1 cut(s)	7
TaiI	ACGT	1 cut(s)	391
TasI	AATT	2 cut(s)	150, 234
TatI	WGTACW	2 cut(s)	321, 461
Tru1I	TTAA	3 cut(s)	183, 246, 374
Tru9I	TTAA	3 cut(s)	183, 246, 374
TscAI	CASTG	1 cut(s)	12
TseFI	GTSAC	2 cut(s)	259, 389
TseI	GCWGC	1 cut(s)	188
Tsp45I	GTSAC	2 cut(s)	259, 389
TspMI	CCCGGG	1 cut(s)	239
TspRI	CASTG	1 cut(s)	12
Tth111I	GACNNNGTC	1 cut(s)	395
VpaK11BI	GGWCC	2 cut(s)	155, 333
VspI	ATTAAT	1 cut(s)	183
XapI	RAATTY	1 cut(s)	234
XceI	RCATGY	1 cut(s)	171
XmaI	CCCGGG	1 cut(s)	239
XspI	CTAG	3 cut(s)	26, 197, 395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.