Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0004989

Physical Location & Seq

Genomic Coordinates Reverse (-)

37281083 .. 37283976

Gene Structure 2894 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG185100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGGTCCTGCCCCATCTCCTCCACCCATCGTCGTCGATTCCACCACCGCCTTGATGAAATCCGAGAGCTTCCGGGCCCACACACAGTTGTCACCCAAGCATTCAAGATGTGAATTGTATGTTCAGGTAAATGAAGGGGATGGTGCATTTTACAGACCAAAGATAGATACCAATGTATCTGATGCATTGAACATGAAGTTTCAGTGTGCAACATTACAGGGAAAAATACTTTTGTTGCAGCTTGATTTTCAGCTACCTGCTCGCTTTGAGCTATATTACTCAGCAGAGGGTGAAGAAGGCAAGAAGGAGGCACCTGCTATGATACACATAGCCATTTTCGGTTCTGTTGAGCGTATGTTTGCTATACTGCTGGAGCACTACAAGGGGAAATGTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004829 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006435 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0030312 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071944 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon TGS tRNA-synt_2b tRNA_SAD

Protein Analysis

132

Amino Acids

14.73

Weight (kDa)

6.41

Isoelectric Point (pI)

45.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_2b	PF00587	43 - 127	1.7e-08	tRNA synthetase class II core domain (G, H, P, S and T)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17960 AT1G17960
malus_domestica	MD15G1401700.v1.1 MD15G1402000.v1.1
rosa_chinensis	RchiOBHm_Chr4g0444231
rosa_laevigata	RLG00000005339 RLG00000005847 RLG00000008520 RLG00000020302
rosa_multiflora	Rmu_sc0000016.1_g000006 Rmu_sc0000987.1_g000022 Rmu_sc0014698.1_g000003
rosa_roxburghii	Rroxscaffold_3G00219500 Rroxscaffold_5G00384800
rosa_rugosa	Rorug03G0334500 Rorug07G0196800
rosa_samantha	Rh1BG152700 Rh1CG027000 Rh1DG185100 Rh2BG464200 Rh4AG158400 Rh4BG163900 Rh4CG184100 Rh4DG152900 Rh4DG153000 Rh5CG279500 Rh6BG190300 Rh7CG027100 Rh7DG026600 Rh7DG335900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	322
Acc36I	ACCTGC	2 cut(s)	265, 322
AccB1I	GGYRCC	1 cut(s)	310
AciI	CCGC	1 cut(s)	48
AgsI	TTSAA	2 cut(s)	105, 190
AluBI	AGCT	4 cut(s)	69, 241, 253, 271
AluI	AGCT	4 cut(s)	69, 241, 253, 271
Alw21I	GWGCWC	1 cut(s)	378
AoxI	GGCC	1 cut(s)	75
ApaI	GGGCCC	1 cut(s)	79
ApeKI	GCWGC	1 cut(s)	238
AspS9I	GGNCC	3 cut(s)	5, 75, 76
AsuC2I	CCSGG	1 cut(s)	74
AsuHPI	GGTGA	2 cut(s)	84, 302
AvaII	GGWCC	1 cut(s)	5
BaeGI	GKGCMC	1 cut(s)	79
BaeI	ACNNNNGTAYC	4 cut(s)	159, 159, 192, 192
BanI	GGYRCC	1 cut(s)	310
BanII	GRGCYC	1 cut(s)	79
Bbv12I	GWGCWC	1 cut(s)	378
BbvI	GCAGC	1 cut(s)	250
BccI	CCATC	3 cut(s)	22, 35, 134
BcnI	CCSGG	1 cut(s)	74
BfuAI	ACCTGC	2 cut(s)	265, 322
BisI	GCNGC	1 cut(s)	239
BlsI	GCNGC	1 cut(s)	240
Bme1390I	CCNGG	1 cut(s)	74
Bme18I	GGWCC	1 cut(s)	5
BmgT120I	GGNCC	3 cut(s)	5, 75, 76
BmiI	GGNNCC	3 cut(s)	6, 77, 312
BmrFI	CCNGG	1 cut(s)	74
BmsI	GCATC	1 cut(s)	172
BpmI	CTGGAG	1 cut(s)	392
BpuMI	CCSGG	1 cut(s)	74
BseGI	GGATG	1 cut(s)	145
BseMII	CTCAG	1 cut(s)	294
BseRI	GAGGAG	1 cut(s)	9
BseSI	GKGCMC	1 cut(s)	79
BseXI	GCAGC	1 cut(s)	250
BshFI	GGCC	1 cut(s)	77
BshNI	GGYRCC	1 cut(s)	310
BsiHKAI	GWGCWC	1 cut(s)	378
BsiSI	CCGG	1 cut(s)	73
BsmI	GAATGC	1 cut(s)	100
BsnI	GGCC	1 cut(s)	77
Bsp120I	GGGCCC	1 cut(s)	75
Bsp1286I	GDGCHC	2 cut(s)	79, 378
BspACI	CCGC	1 cut(s)	48
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	1 cut(s)	293
BspLI	GGNNCC	3 cut(s)	6, 77, 312
BspMI	ACCTGC	2 cut(s)	265, 322
BspT107I	GGYRCC	1 cut(s)	310
Bst4CI	ACNGT	1 cut(s)	87
BstC8I	GCNNGC	1 cut(s)	262
BstDEI	CTNAG	1 cut(s)	280
BstF5I	GGATG	1 cut(s)	145
BstSCI	CCNGG	1 cut(s)	72
BstSLI	GKGCMC	1 cut(s)	79
BstV1I	GCAGC	1 cut(s)	250
BsuRI	GGCC	1 cut(s)	77
BtsCI	GGATG	1 cut(s)	145
BtsIMutI	CAGTG	1 cut(s)	209
BveI	ACCTGC	2 cut(s)	265, 322
Cac8I	GCNNGC	1 cut(s)	262
Cfr13I	GGNCC	3 cut(s)	5, 75, 76
CviAII	CATG	1 cut(s)	193
CviJI	RGCY	6 cut(s)	69, 77, 241, 253, 271, 332
CviKI_1	RGCY	6 cut(s)	69, 77, 241, 253, 271, 332
DdeI	CTNAG	1 cut(s)	280
Eco24I	GRGCYC	1 cut(s)	79
Eco47I	GGWCC	1 cut(s)	5
EcoO109I	RGGNCCY	1 cut(s)	5
EcoT22I	ATGCAT	1 cut(s)	187
EcoT38I	GRGCYC	1 cut(s)	79
FaeI	CATG	1 cut(s)	196
FaiI	YATR	7 cut(s)	120, 194, 274, 320, 329, 356, 365
FatI	CATG	1 cut(s)	192
Fnu4HI	GCNGC	1 cut(s)	239
FokI	GGATG	1 cut(s)	152
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	1 cut(s)	239
GluI	GCNGC	1 cut(s)	239
GsuI	CTGGAG	1 cut(s)	392
HaeIII	GGCC	1 cut(s)	77
HapII	CCGG	1 cut(s)	73
Hin1II	CATG	1 cut(s)	196
HinfI	GANTC	1 cut(s)	38
HpaII	CCGG	1 cut(s)	73
HphI	GGTGA	2 cut(s)	84, 302
Hpy188I	TCNGA	2 cut(s)	64, 181
Hpy188III	TCNNGA	1 cut(s)	105
Hpy99I	CGWCG	2 cut(s)	35, 38
HpyAV	CCTTC	3 cut(s)	128, 290, 298
HpyCH4III	ACNGT	1 cut(s)	87
HpyCH4V	TGCA	4 cut(s)	146, 185, 209, 238
HpyF3I	CTNAG	1 cut(s)	280
Hsp92II	CATG	1 cut(s)	196
LmnI	GCTCC	1 cut(s)	373
LpnPI	CCDG	7 cut(s)	21, 86, 110, 203, 270, 327, 356
Lsp1109I	GCAGC	1 cut(s)	250
LweI	GCATC	1 cut(s)	172
MaeIII	GTNAC	1 cut(s)	90
MboII	GAAGA	1 cut(s)	305
MhlI	GDGCHC	2 cut(s)	79, 378
MluCI	AATT	1 cut(s)	113
MnlI	CCTC	3 cut(s)	30, 280, 301
Mph1103I	ATGCAT	1 cut(s)	187
MspI	CCGG	1 cut(s)	73
MspR9I	CCNGG	1 cut(s)	74
Mva1269I	GAATGC	1 cut(s)	100
NciI	CCSGG	1 cut(s)	74
NlaIII	CATG	1 cut(s)	196
NlaIV	GGNNCC	3 cut(s)	6, 77, 312
NmuCI	GTSAC	1 cut(s)	90
NsiI	ATGCAT	1 cut(s)	187
PaqCI	CACCTGC	1 cut(s)	322
PctI	GAATGC	1 cut(s)	100
PfeI	GAWTC	1 cut(s)	38
PkrI	GCNGC	1 cut(s)	240
PpuMI	RGGWCCY	1 cut(s)	5
Psp5II	RGGWCCY	1 cut(s)	5
PspN4I	GGNNCC	3 cut(s)	6, 77, 312
PspOMI	GGGCCC	1 cut(s)	75
PspPI	GGNCC	3 cut(s)	5, 75, 76
PspPPI	RGGWCCY	1 cut(s)	5
SatI	GCNGC	1 cut(s)	239
Sau96I	GGNCC	3 cut(s)	5, 75, 76
ScrFI	CCNGG	1 cut(s)	74
SduI	GDGCHC	2 cut(s)	79, 378
SetI	ASST	7 cut(s)	71, 129, 243, 255, 259, 273, 316
SfaNI	GCATC	1 cut(s)	172
SinI	GGWCC	1 cut(s)	5
Sse9I	AATT	1 cut(s)	113
SsiI	CCGC	1 cut(s)	48
StyD4I	CCNGG	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	87
TaqI	TCGA	1 cut(s)	36
TasI	AATT	1 cut(s)	113
TfiI	GAWTC	1 cut(s)	38
TscAI	CASTG	1 cut(s)	209
TseFI	GTSAC	1 cut(s)	90
TseI	GCWGC	1 cut(s)	238
Tsp45I	GTSAC	1 cut(s)	90
TspDTI	ATGAA	3 cut(s)	71, 147, 209
TspRI	CASTG	1 cut(s)	209
VpaK11BI	GGWCC	1 cut(s)	5
Zsp2I	ATGCAT	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.