Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0004989

Physical Location & Seq

Genomic Coordinates Forward (+)

43695213 .. 43695634

Gene Structure 422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG335900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 154 bp

ATGGGTAGGTTAGAACCCATCCTGATGTGTGCAACATTACAGCTTGATTTTCAGCTACCTGCTCGCTTTGAGCTGTATTACTCAGCAGTGGGTGAAGAAGGCAAGAAGGAGGCACCTGTTATGATACACATAGCCATTTTGGATTCTATTGAGC

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004829 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006435 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0030312 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071944 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon TGS tRNA-synt_2b tRNA_SAD

Protein Analysis

51

Amino Acids

5.75

Weight (kDa)

4.7

Isoelectric Point (pI)

68.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17960 AT1G17960
malus_domestica	MD15G1401700.v1.1 MD15G1402000.v1.1
rosa_chinensis	RchiOBHm_Chr4g0444231
rosa_laevigata	RLG00000005339 RLG00000005847 RLG00000008520 RLG00000020302
rosa_multiflora	Rmu_sc0000016.1_g000006 Rmu_sc0000987.1_g000022 Rmu_sc0014698.1_g000003
rosa_roxburghii	Rroxscaffold_3G00219500 Rroxscaffold_5G00384800
rosa_rugosa	Rorug03G0334500 Rorug07G0196800
rosa_samantha	Rh1BG152700 Rh1CG027000 Rh1DG185100 Rh2BG464200 Rh4AG158400 Rh4BG163900 Rh4CG184100 Rh4DG152900 Rh4DG153000 Rh5CG279500 Rh6BG190300 Rh7CG027100 Rh7DG026600 Rh7DG335900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	67
AccB1I	GGYRCC	1 cut(s)	112
AluBI	AGCT	3 cut(s)	43, 55, 73
AluI	AGCT	3 cut(s)	43, 55, 73
AsuHPI	GGTGA	1 cut(s)	104
BanI	GGYRCC	1 cut(s)	112
BccI	CCATC	1 cut(s)	26
BfuAI	ACCTGC	1 cut(s)	67
BmiI	GGNNCC	1 cut(s)	114
BseGI	GGATG	1 cut(s)	18
BseMII	CTCAG	1 cut(s)	96
BshNI	GGYRCC	1 cut(s)	112
BspCNI	CTCAG	1 cut(s)	95
BspLI	GGNNCC	1 cut(s)	114
BspMI	ACCTGC	1 cut(s)	67
BspT107I	GGYRCC	1 cut(s)	112
BstC8I	GCNNGC	1 cut(s)	64
BstDEI	CTNAG	1 cut(s)	82
BstF5I	GGATG	1 cut(s)	18
BtsCI	GGATG	1 cut(s)	18
BtsI	GCAGTG	1 cut(s)	93
BtsIMutI	CAGTG	1 cut(s)	93
BveI	ACCTGC	1 cut(s)	67
Cac8I	GCNNGC	1 cut(s)	64
CviJI	RGCY	4 cut(s)	43, 55, 73, 134
CviKI_1	RGCY	4 cut(s)	43, 55, 73, 134
DdeI	CTNAG	1 cut(s)	82
FaiI	YATR	2 cut(s)	122, 131
FokI	GGATG	1 cut(s)	5
HinfI	GANTC	1 cut(s)	143
HphI	GGTGA	1 cut(s)	104
Hpy188III	TCNNGA	1 cut(s)	22
HpyAV	CCTTC	2 cut(s)	92, 100
HpyCH4V	TGCA	1 cut(s)	32
HpyF3I	CTNAG	1 cut(s)	82
LpnPI	CCDG	3 cut(s)	35, 72, 129
MboII	GAAGA	1 cut(s)	107
MnlI	CCTC	1 cut(s)	103
MslI	CAYNNNNRTG	1 cut(s)	23
NlaIV	GGNNCC	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	143
PspN4I	GGNNCC	1 cut(s)	114
RseI	CAYNNNNRTG	1 cut(s)	23
SetI	ASST	6 cut(s)	11, 45, 57, 61, 75, 118
SgeI	CNNG	6 cut(s)	34, 56, 71, 75, 115, 128
SmiMI	CAYNNNNRTG	1 cut(s)	23
TfiI	GAWTC	1 cut(s)	143
TscAI	CASTG	1 cut(s)	93
TspRI	CASTG	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.