Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0004989

Physical Location & Seq

Genomic Coordinates Reverse (-)

2038417 .. 2039118

Gene Structure 702 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG026600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGCAACTTTGGGATACATCTGGTCATGCTGCAAATTACAAAGAGAATATGTTTGTCTTTCAGATTGAGAAACAAGAGTTTGGATTGAAGCCGATGAATTGTCCCGGGCATTGTTTAATGTTTCAGCACAGAGTTCGTTCTTATAGAGAGCTTCCTCTTCGACTGGCTGACTTTGGGGTTTTGCATCGGAATGAGGCCAGTGGTGCACTCACTGGATTAACTCGTGTCAGGAGATTCCAGCAGGATGATGCTAATATCTTTTGCAGGGAGTCACAAAGAAGAGATGAAGTTAAGGGCGTCTTAGACTTCATCCAGTATGTCTACGATATATTTGGCTTCACTTTTGATCTGAAGCTATCAACAAGGCCAGAAAAGTACCTTGGAGAGATAGAAACATGGGAGAAAGCTGAGGCAGCTCTTACAGATGCATTAAATGAGTTTGGCAAACCCTGGCAGATAAATAAAGGGGATGGTGCATTTTATGGACCAAAGATAGATATTAGTGTATCTGATGCATTAAACAGGAAGTTTCAGTGTGCAACATTACAGCTTGATTTTCAGCTACCTGCTCGCTTTGAGCTGTATTACTCAGCAGAGGGTGAAGAAGGCAAGAGGGAGGCACCTGTTATGATACACAGAGCCATTTTGGGTTCTGTCGAGCGTATGTTTGCTATACTATTGGAGCACTACAAGGGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004829 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006435 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0030312 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071944 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon TGS tRNA-synt_2b tRNA_SAD

Protein Analysis

233

Amino Acids

27.01

Weight (kDa)

6.33

Isoelectric Point (pI)

39.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_2b	PF00587	20 - 230	1.1e-45	tRNA synthetase class II core domain (G, H, P, S and T)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17960 AT1G17960
malus_domestica	MD15G1401700.v1.1 MD15G1402000.v1.1
rosa_chinensis	RchiOBHm_Chr4g0444231
rosa_laevigata	RLG00000005339 RLG00000005847 RLG00000008520 RLG00000020302
rosa_multiflora	Rmu_sc0000016.1_g000006 Rmu_sc0000987.1_g000022 Rmu_sc0014698.1_g000003
rosa_roxburghii	Rroxscaffold_3G00219500 Rroxscaffold_5G00384800
rosa_rugosa	Rorug03G0334500 Rorug07G0196800
rosa_samantha	Rh1BG152700 Rh1CG027000 Rh1DG185100 Rh2BG464200 Rh4AG158400 Rh4BG163900 Rh4CG184100 Rh4DG152900 Rh4DG153000 Rh5CG279500 Rh6BG190300 Rh7CG027100 Rh7DG026600 Rh7DG335900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	574
AccB1I	GGYRCC	1 cut(s)	619
AccI	GTMKAC	1 cut(s)	321
AcuI	CTGAAG	1 cut(s)	371
AcyI	GRCGYC	1 cut(s)	297
AfaI	GTAC	1 cut(s)	377
AgsI	TTSAA	1 cut(s)	88
AjnI	CCWGG	1 cut(s)	449
AjuI	GAANNNNNNNTTGG	2 cut(s)	363, 395
AluBI	AGCT	7 cut(s)	151, 355, 407, 416, 550, 562, 580
AluI	AGCT	7 cut(s)	151, 355, 407, 416, 550, 562, 580
Alw21I	GWGCWC	2 cut(s)	208, 687
Alw44I	GTGCAC	1 cut(s)	204
Ama87I	CYCGRG	1 cut(s)	104
AoxI	GGCC	2 cut(s)	195, 365
ApaLI	GTGCAC	1 cut(s)	204
ApeKI	GCWGC	2 cut(s)	29, 413
AspS9I	GGNCC	1 cut(s)	485
AsuC2I	CCSGG	2 cut(s)	105, 106
AsuHPI	GGTGA	1 cut(s)	611
AvaI	CYCGRG	1 cut(s)	104
AvaII	GGWCC	1 cut(s)	485
BaeGI	GKGCMC	1 cut(s)	208
BanI	GGYRCC	1 cut(s)	619
BauI	CACGAG	1 cut(s)	222
Bbv12I	GWGCWC	2 cut(s)	208, 687
BbvCI	CCTCAGC	1 cut(s)	408
BbvI	GCAGC	2 cut(s)	16, 425
BccI	CCATC	1 cut(s)	464
BcgI	CGANNNNNNTGC	2 cut(s)	116, 150
BciT130I	CCWGG	1 cut(s)	451
BciVI	GTATCC	1 cut(s)	7
BcnI	CCSGG	2 cut(s)	105, 106
BfuAI	ACCTGC	1 cut(s)	574
BfuI	GTATCC	1 cut(s)	7
BisI	GCNGC	2 cut(s)	30, 414
BlsI	GCNGC	2 cut(s)	31, 415
Bme1390I	CCNGG	3 cut(s)	105, 106, 451
Bme18I	GGWCC	1 cut(s)	485
BmeT110I	CYCGRG	1 cut(s)	104
BmgT120I	GGNCC	1 cut(s)	485
BmiI	GGNNCC	1 cut(s)	621
BmrFI	CCNGG	3 cut(s)	105, 106, 451
BmsI	GCATC	4 cut(s)	193, 238, 415, 502
Bpu10I	CCTNAGC	1 cut(s)	408
BpuMI	CCSGG	2 cut(s)	105, 106
BsaHI	GRCGYC	1 cut(s)	297
BsaJI	CCNNGG	3 cut(s)	104, 379, 449
Bse1I	ACTGG	4 cut(s)	168, 198, 217, 313
BseBI	CCWGG	1 cut(s)	451
BseDI	CCNNGG	3 cut(s)	104, 379, 449
BseGI	GGATG	3 cut(s)	250, 309, 475
BseMII	CTCAG	2 cut(s)	399, 603
BseNI	ACTGG	4 cut(s)	168, 198, 217, 313
BseSI	GKGCMC	1 cut(s)	208
BseXI	GCAGC	2 cut(s)	16, 425
BshFI	GGCC	2 cut(s)	197, 367
BshNI	GGYRCC	1 cut(s)	619
BsiHKAI	GWGCWC	2 cut(s)	208, 687
BsiHKCI	CYCGRG	1 cut(s)	104
BsiSI	CCGG	1 cut(s)	105
BslFI	GGGAC	1 cut(s)	87
BsmFI	GGGAC	1 cut(s)	87
BsnI	GGCC	2 cut(s)	197, 367
BsoBI	CYCGRG	1 cut(s)	104
Bsp1286I	GDGCHC	2 cut(s)	208, 687
Bsp143I	GATC	1 cut(s)	346
BspANI	GGCC	2 cut(s)	197, 367
BspCNI	CTCAG	2 cut(s)	400, 602
BspLI	GGNNCC	1 cut(s)	621
BspMI	ACCTGC	1 cut(s)	574
BspT107I	GGYRCC	1 cut(s)	619
BsrI	ACTGG	4 cut(s)	168, 198, 217, 313
BssECI	CCNNGG	3 cut(s)	104, 379, 449
BssMI	GATC	1 cut(s)	346
BssNI	GRCGYC	1 cut(s)	297
BssSI	CACGAG	1 cut(s)	222
BssT1I	CCWWGG	1 cut(s)	379
Bst2BI	CACGAG	1 cut(s)	222
Bst2UI	CCWGG	1 cut(s)	451
Bst6I	CTCTTC	2 cut(s)	162, 274
BstACI	GRCGYC	1 cut(s)	297
BstC8I	GCNNGC	1 cut(s)	571
BstDEI	CTNAG	3 cut(s)	301, 408, 589
BstF5I	GGATG	3 cut(s)	250, 309, 475
BstKTI	GATC	1 cut(s)	349
BstMBI	GATC	1 cut(s)	346
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 413
BstNI	CCWGG	1 cut(s)	451
BstSCI	CCNGG	3 cut(s)	103, 104, 449
BstSLI	GKGCMC	1 cut(s)	208
BstV1I	GCAGC	2 cut(s)	16, 425
BsuI	GTATCC	1 cut(s)	7
BsuRI	GGCC	2 cut(s)	197, 367
BtsCI	GGATG	3 cut(s)	250, 309, 475
BtsIMutI	CAGTG	3 cut(s)	205, 210, 539
BveI	ACCTGC	1 cut(s)	574
Cac8I	GCNNGC	1 cut(s)	571
Cfr13I	GGNCC	1 cut(s)	485
Cfr9I	CCCGGG	1 cut(s)	104
CseI	GACGC	1 cut(s)	286
Csp6I	GTAC	1 cut(s)	376
CviAII	CATG	2 cut(s)	26, 396
CviQI	GTAC	1 cut(s)	376
DdeI	CTNAG	3 cut(s)	301, 408, 589
DpnI	GATC	1 cut(s)	348
DpnII	GATC	1 cut(s)	346
Eam1104I	CTCTTC	2 cut(s)	162, 274
EarI	CTCTTC	2 cut(s)	162, 274
Eco130I	CCWWGG	1 cut(s)	379
Eco47I	GGWCC	1 cut(s)	485
Eco57I	CTGAAG	1 cut(s)	371
Eco88I	CYCGRG	1 cut(s)	104
EcoRII	CCWGG	1 cut(s)	449
EcoT14I	CCWWGG	1 cut(s)	379
EcoT22I	ATGCAT	2 cut(s)	430, 517
ErhI	CCWWGG	1 cut(s)	379
FaeI	CATG	2 cut(s)	29, 399
FalI	AAGNNNNNCTT	2 cut(s)	284, 316
FaqI	GGGAC	1 cut(s)	87
FatI	CATG	2 cut(s)	25, 395
FblI	GTMKAC	1 cut(s)	321
Fnu4HI	GCNGC	2 cut(s)	30, 414
FokI	GGATG	3 cut(s)	257, 296, 482
Fsp4HI	GCNGC	2 cut(s)	30, 414
GluI	GCNGC	2 cut(s)	30, 414
HaeIII	GGCC	2 cut(s)	197, 367
HapII	CCGG	1 cut(s)	105
HgaI	GACGC	1 cut(s)	286
Hin1I	GRCGYC	1 cut(s)	297
Hin1II	CATG	2 cut(s)	29, 399
HinfI	GANTC	2 cut(s)	234, 269
HpaII	CCGG	1 cut(s)	105
HphI	GGTGA	1 cut(s)	611
Hpy166II	GTNNAC	2 cut(s)	206, 322
Hpy188I	TCNGA	4 cut(s)	63, 189, 351, 511
Hpy188III	TCNNGA	1 cut(s)	229
Hpy8I	GTNNAC	2 cut(s)	206, 322
HpyAV	CCTTC	1 cut(s)	599
HpyCH4V	TGCA	9 cut(s)	4, 32, 184, 206, 264, 428, 476, 515, 539
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 413
HpyF3I	CTNAG	3 cut(s)	301, 408, 589
Hsp92I	GRCGYC	1 cut(s)	297
Hsp92II	CATG	2 cut(s)	29, 399
Kzo9I	GATC	1 cut(s)	346
LmnI	GCTCC	1 cut(s)	682
Lsp1109I	GCAGC	2 cut(s)	16, 425
LweI	GCATC	4 cut(s)	193, 238, 415, 502
MaeIII	GTNAC	1 cut(s)	270
MalI	GATC	1 cut(s)	348
MboI	GATC	1 cut(s)	346
MboII	GAAGA	3 cut(s)	149, 291, 614
MhlI	GDGCHC	2 cut(s)	208, 687
MluCI	AATT	2 cut(s)	34, 97
MlyI	GAGTC	1 cut(s)	278
MnlI	CCTC	6 cut(s)	165, 187, 403, 589, 606, 610
Mph1103I	ATGCAT	2 cut(s)	430, 517
MseI	TTAA	5 cut(s)	116, 218, 291, 431, 518
MslI	CAYNNNNRTG	1 cut(s)	189
MspI	CCGG	1 cut(s)	105
MspR9I	CCNGG	3 cut(s)	105, 106, 451
MvaI	CCWGG	1 cut(s)	451
MwoI	GCNNNNNNNGC	2 cut(s)	203, 413
NciI	CCSGG	2 cut(s)	105, 106
NdeII	GATC	1 cut(s)	346
NlaIII	CATG	2 cut(s)	29, 399
NlaIV	GGNNCC	1 cut(s)	621
NmuCI	GTSAC	1 cut(s)	270
NsiI	ATGCAT	2 cut(s)	430, 517
PfeI	GAWTC	1 cut(s)	234
PkrI	GCNGC	2 cut(s)	31, 415
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
Psp6I	CCWGG	1 cut(s)	449
PspGI	CCWGG	1 cut(s)	449
PspN4I	GGNNCC	1 cut(s)	621
PspPI	GGNCC	1 cut(s)	485
RsaI	GTAC	1 cut(s)	377
RsaNI	GTAC	1 cut(s)	376
RseI	CAYNNNNRTG	1 cut(s)	189
SaqAI	TTAA	5 cut(s)	116, 218, 291, 431, 518
SatI	GCNGC	2 cut(s)	30, 414
Sau3AI	GATC	1 cut(s)	346
Sau96I	GGNCC	1 cut(s)	485
SchI	GAGTC	1 cut(s)	278
ScrFI	CCNGG	3 cut(s)	105, 106, 451
SduI	GDGCHC	2 cut(s)	208, 687
SfaNI	GCATC	4 cut(s)	193, 238, 415, 502
SinI	GGWCC	1 cut(s)	485
SmaI	CCCGGG	1 cut(s)	106
SmiMI	CAYNNNNRTG	1 cut(s)	189
Sse9I	AATT	2 cut(s)	34, 97
StyD4I	CCNGG	3 cut(s)	103, 104, 449
StyI	CCWWGG	1 cut(s)	379
TaqI	TCGA	2 cut(s)	160, 657
TasI	AATT	2 cut(s)	34, 97
TfiI	GAWTC	1 cut(s)	234
Tru1I	TTAA	5 cut(s)	116, 218, 291, 431, 518
Tru9I	TTAA	5 cut(s)	116, 218, 291, 431, 518
TscAI	CASTG	3 cut(s)	205, 217, 539
TseFI	GTSAC	1 cut(s)	270
TseI	GCWGC	2 cut(s)	29, 413
Tsp45I	GTSAC	1 cut(s)	270
TspDTI	ATGAA	3 cut(s)	110, 298, 300
TspMI	CCCGGG	1 cut(s)	104
TspRI	CASTG	3 cut(s)	205, 217, 539
VneI	GTGCAC	1 cut(s)	204
VpaK11BI	GGWCC	1 cut(s)	485
XmaI	CCCGGG	1 cut(s)	104
XmiI	GTMKAC	1 cut(s)	321
Zsp2I	ATGCAT	2 cut(s)	430, 517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.