Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004989

Physical Location & Seq

Genomic Coordinates Reverse (-)

1593859 .. 1609250

Gene Structure 15392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00219500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGATTTCTACATTATCGTCAACCTCCGGCTCCATATTTGCAAGAACAAACGGTCCCCAAGTAGCTGCTGCTTACGCTCCCAAGCCATTCGCTCTCCATGATTTCTACATTATCGTCAACCTCGGCTCCATATTTGCAAGAACAAACGGTCCCCAAGTAGCTGCTTTTACTGGTAGCACCAAATCCGAGCTGAGCTTGGTTGGCCGGTCCGACCCTCCTTGGCTCTTATCCCTATGTCGTGTCTACGCAATCGATTCCAGCCCGATCCACCAAATGGGTCCTGCTCCATCTCCTCCACCCATTGTCGTCGATTCCACCACCGCCCGGATGAAATTCGAGAGCTTCCGGGCCCGGACACGGATAAATGAAGGGGATGGCGCATTTTACCTGCCAAAGATAGATATCAGTGTATTTGATGCATTGAACATGAAGTTTCAGTGTGCAACATTACAGATCTTGCTGCCGATTAAGGGAAAATGGATTGATGTCGAAGATAGTGAATTACTTGTAGAGCATATTATTAGAGAAGAGAATATGATGGCAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004829 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006435 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0030312 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071944 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon TGS tRNA-synt_2b tRNA_SAD

Protein Analysis

182

Amino Acids

19.9

Weight (kDa)

6.28

Isoelectric Point (pI)

43.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17960 AT1G17960
malus_domestica	MD15G1401700.v1.1 MD15G1402000.v1.1
rosa_chinensis	RchiOBHm_Chr4g0444231
rosa_laevigata	RLG00000005339 RLG00000005847 RLG00000008520 RLG00000020302
rosa_multiflora	Rmu_sc0000016.1_g000006 Rmu_sc0000987.1_g000022 Rmu_sc0014698.1_g000003
rosa_roxburghii	Rroxscaffold_3G00219500 Rroxscaffold_5G00384800
rosa_rugosa	Rorug03G0334500 Rorug07G0196800
rosa_samantha	Rh1BG152700 Rh1CG027000 Rh1DG185100 Rh2BG464200 Rh4AG158400 Rh4BG163900 Rh4CG184100 Rh4DG152900 Rh4DG153000 Rh5CG279500 Rh6BG190300 Rh7CG027100 Rh7DG026600 Rh7DG335900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	396
AccB7I	CCANNNNNTGG	1 cut(s)	274
AccI	GTMKAC	1 cut(s)	243
AciI	CCGC	1 cut(s)	321
AclWI	GGATC	1 cut(s)	259
AcoI	YGGCCR	1 cut(s)	202
AcsI	RAATTY	1 cut(s)	332
AfiI	CCNNNNNNNGG	4 cut(s)	274, 324, 357, 470
AgsI	TTSAA	1 cut(s)	424
AloI	GAACNNNNNNTCC	4 cut(s)	37, 69, 133, 165
AluBI	AGCT	6 cut(s)	65, 161, 190, 195, 342, 545
AluI	AGCT	6 cut(s)	65, 161, 190, 195, 342, 545
AlwI	GGATC	1 cut(s)	259
AoxI	GGCC	2 cut(s)	202, 348
ApaI	GGGCCC	1 cut(s)	352
ApeKI	GCWGC	5 cut(s)	65, 68, 161, 460, 542
ApoI	RAATTY	1 cut(s)	332
AspLEI	GCGC	1 cut(s)	380
AspS9I	GGNCC	6 cut(s)	53, 149, 207, 278, 348, 349
AsuC2I	CCSGG	3 cut(s)	325, 347, 352
AvaII	GGWCC	4 cut(s)	53, 149, 207, 278
BaeGI	GKGCMC	1 cut(s)	352
BanII	GRGCYC	1 cut(s)	352
BbvI	GCAGC	4 cut(s)	52, 55, 148, 447
BccI	CCATC	3 cut(s)	295, 368, 532
BcnI	CCSGG	3 cut(s)	325, 347, 352
BfuAI	ACCTGC	1 cut(s)	396
BglII	AGATCT	1 cut(s)	453
BisI	GCNGC	5 cut(s)	66, 69, 162, 461, 543
BlpI	GCTNAGC	1 cut(s)	191
BlsI	GCNGC	5 cut(s)	67, 70, 163, 462, 544
Bme1390I	CCNGG	3 cut(s)	325, 347, 352
Bme18I	GGWCC	4 cut(s)	53, 149, 207, 278
BmgT120I	GGNCC	6 cut(s)	53, 149, 207, 278, 348, 349
BmiI	GGNNCC	6 cut(s)	31, 55, 127, 151, 279, 350
BmrFI	CCNGG	3 cut(s)	325, 347, 352
BmsI	GCATC	1 cut(s)	406
Bpu1102I	GCTNAGC	1 cut(s)	191
BpuMI	CCSGG	3 cut(s)	325, 347, 352
Bsa29I	ATCGAT	1 cut(s)	252
BsaBI	GATNNNNATC	1 cut(s)	401
BsaJI	CCNNGG	2 cut(s)	121, 218
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bsc4I	CCNNNNNNNGG	4 cut(s)	274, 324, 357, 470
Bse118I	RCCGGY	1 cut(s)	204
Bse1I	ACTGG	1 cut(s)	175
Bse8I	GATNNNNATC	1 cut(s)	401
BseCI	ATCGAT	1 cut(s)	252
BseDI	CCNNGG	2 cut(s)	121, 218
BseGI	GGATG	2 cut(s)	333, 379
BseJI	GATNNNNATC	1 cut(s)	401
BseLI	CCNNNNNNNGG	4 cut(s)	274, 324, 357, 470
BseMII	CTCAG	1 cut(s)	182
BseNI	ACTGG	1 cut(s)	175
BseRI	GAGGAG	1 cut(s)	282
BseSI	GKGCMC	1 cut(s)	352
BseXI	GCAGC	4 cut(s)	52, 55, 148, 447
BshFI	GGCC	2 cut(s)	204, 350
BshVI	ATCGAT	1 cut(s)	252
BsiSI	CCGG	5 cut(s)	27, 205, 325, 346, 352
BslFI	GGGAC	2 cut(s)	39, 135
BslI	CCNNNNNNNGG	4 cut(s)	274, 324, 357, 470
BsmFI	GGGAC	2 cut(s)	39, 135
BsnI	GGCC	2 cut(s)	204, 350
Bsp120I	GGGCCC	1 cut(s)	348
Bsp1286I	GDGCHC	1 cut(s)	352
Bsp143I	GATC	2 cut(s)	264, 453
Bsp1720I	GCTNAGC	1 cut(s)	191
BspACI	CCGC	1 cut(s)	321
BspANI	GGCC	2 cut(s)	204, 350
BspCNI	CTCAG	1 cut(s)	183
BspDI	ATCGAT	1 cut(s)	252
BspLI	GGNNCC	6 cut(s)	31, 55, 127, 151, 279, 350
BspMI	ACCTGC	1 cut(s)	396
BspPI	GGATC	1 cut(s)	259
BsrFI	RCCGGY	1 cut(s)	204
BsrI	ACTGG	1 cut(s)	175
BssAI	RCCGGY	1 cut(s)	204
BssECI	CCNNGG	2 cut(s)	121, 218
BssMI	GATC	2 cut(s)	264, 453
BssT1I	CCWWGG	1 cut(s)	218
Bst4CI	ACNGT	2 cut(s)	53, 149
Bst6I	CTCTTC	1 cut(s)	522
BstDEI	CTNAG	2 cut(s)	191, 546
BstF5I	GGATG	2 cut(s)	333, 379
BstHHI	GCGC	1 cut(s)	380
BstKTI	GATC	2 cut(s)	267, 456
BstMBI	GATC	2 cut(s)	264, 453
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 201
BstSCI	CCNGG	3 cut(s)	323, 345, 350
BstSLI	GKGCMC	1 cut(s)	352
BstV1I	GCAGC	4 cut(s)	52, 55, 148, 447
BstX2I	RGATCY	1 cut(s)	453
BstYI	RGATCY	1 cut(s)	453
Bsu15I	ATCGAT	1 cut(s)	252
BsuRI	GGCC	2 cut(s)	204, 350
BsuTUI	ATCGAT	1 cut(s)	252
BtsCI	GGATG	2 cut(s)	333, 379
BtsIMutI	CAGTG	2 cut(s)	412, 443
BveI	ACCTGC	1 cut(s)	396
CfoI	GCGC	1 cut(s)	380
Cfr10I	RCCGGY	1 cut(s)	204
Cfr13I	GGNCC	6 cut(s)	53, 149, 207, 278, 348, 349
ClaI	ATCGAT	1 cut(s)	252
CpoI	CGGWCCG	1 cut(s)	207
CspI	CGGWCCG	1 cut(s)	207
CviAII	CATG	2 cut(s)	98, 427
DdeI	CTNAG	2 cut(s)	191, 546
DpnI	GATC	2 cut(s)	266, 455
DpnII	GATC	2 cut(s)	264, 453
EaeI	YGGCCR	1 cut(s)	202
Eam1104I	CTCTTC	1 cut(s)	522
EarI	CTCTTC	1 cut(s)	522
Eco130I	CCWWGG	1 cut(s)	218
Eco24I	GRGCYC	1 cut(s)	352
Eco32I	GATATC	1 cut(s)	403
Eco47I	GGWCC	4 cut(s)	53, 149, 207, 278
EcoO109I	RGGNCCY	1 cut(s)	278
EcoRV	GATATC	1 cut(s)	403
EcoT14I	CCWWGG	1 cut(s)	218
EcoT22I	ATGCAT	1 cut(s)	421
EcoT38I	GRGCYC	1 cut(s)	352
ErhI	CCWWGG	1 cut(s)	218
FaeI	CATG	2 cut(s)	101, 430
FaiI	YATR	7 cut(s)	35, 99, 131, 235, 428, 516, 536
FaqI	GGGAC	2 cut(s)	39, 135
FatI	CATG	2 cut(s)	97, 426
FblI	GTMKAC	1 cut(s)	243
Fnu4HI	GCNGC	5 cut(s)	66, 69, 162, 461, 543
FokI	GGATG	2 cut(s)	340, 386
FriOI	GRGCYC	1 cut(s)	352
Fsp4HI	GCNGC	5 cut(s)	66, 69, 162, 461, 543
GlaI	GCGC	1 cut(s)	379
GluI	GCNGC	5 cut(s)	66, 69, 162, 461, 543
HaeIII	GGCC	2 cut(s)	204, 350
HapII	CCGG	5 cut(s)	27, 205, 325, 346, 352
HhaI	GCGC	1 cut(s)	380
Hin1II	CATG	2 cut(s)	101, 430
Hin6I	GCGC	1 cut(s)	378
HinP1I	GCGC	1 cut(s)	378
HincII	GTYRAC	2 cut(s)	21, 118
HindII	GTYRAC	2 cut(s)	21, 118
HinfI	GANTC	2 cut(s)	254, 311
HpaII	CCGG	5 cut(s)	27, 205, 325, 346, 352
Hpy166II	GTNNAC	3 cut(s)	21, 118, 244
Hpy188I	TCNGA	2 cut(s)	187, 211
Hpy188III	TCNNGA	1 cut(s)	337
Hpy8I	GTNNAC	3 cut(s)	21, 118, 244
Hpy99I	CGWCG	1 cut(s)	311
HpyAV	CCTTC	1 cut(s)	362
HpyCH4III	ACNGT	2 cut(s)	53, 149
HpyCH4V	TGCA	4 cut(s)	41, 137, 419, 443
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 201
HpyF3I	CTNAG	2 cut(s)	191, 546
Hsp92II	CATG	2 cut(s)	101, 430
HspAI	GCGC	1 cut(s)	378
Kzo9I	GATC	2 cut(s)	264, 453
LmnI	GCTCC	4 cut(s)	35, 82, 131, 289
LpnPI	CCDG	9 cut(s)	40, 156, 218, 271, 294, 338, 359, 365, 401
Lsp1109I	GCAGC	4 cut(s)	52, 55, 148, 447
LweI	GCATC	1 cut(s)	406
MalI	GATC	2 cut(s)	266, 455
MboI	GATC	2 cut(s)	264, 453
MboII	GAAGA	2 cut(s)	503, 539
MflI	RGATCY	1 cut(s)	453
MhlI	GDGCHC	1 cut(s)	352
MluCI	AATT	2 cut(s)	332, 500
MmeI	TCCRAC	1 cut(s)	234
MnlI	CCTC	4 cut(s)	34, 131, 225, 303
Mph1103I	ATGCAT	1 cut(s)	421
MseI	TTAA	1 cut(s)	468
MspI	CCGG	5 cut(s)	27, 205, 325, 346, 352
MspR9I	CCNGG	3 cut(s)	325, 347, 352
MwoI	GCNNNNNNNGC	2 cut(s)	74, 201
NciI	CCSGG	3 cut(s)	325, 347, 352
NdeII	GATC	2 cut(s)	264, 453
NlaIII	CATG	2 cut(s)	101, 430
NlaIV	GGNNCC	6 cut(s)	31, 55, 127, 151, 279, 350
NmeAIII	GCCGAG	1 cut(s)	102
NsiI	ATGCAT	1 cut(s)	421
PfeI	GAWTC	2 cut(s)	254, 311
PflMI	CCANNNNNTGG	1 cut(s)	274
PkrI	GCNGC	5 cut(s)	67, 70, 163, 462, 544
PpuMI	RGGWCCY	1 cut(s)	278
Psp5II	RGGWCCY	1 cut(s)	278
PspN4I	GGNNCC	6 cut(s)	31, 55, 127, 151, 279, 350
PspOMI	GGGCCC	1 cut(s)	348
PspPI	GGNCC	6 cut(s)	53, 149, 207, 278, 348, 349
PspPPI	RGGWCCY	1 cut(s)	278
PsuI	RGATCY	1 cut(s)	453
Rsr2I	CGGWCCG	1 cut(s)	207
RsrII	CGGWCCG	1 cut(s)	207
SaqAI	TTAA	1 cut(s)	468
SatI	GCNGC	5 cut(s)	66, 69, 162, 461, 543
Sau3AI	GATC	2 cut(s)	264, 453
Sau96I	GGNCC	6 cut(s)	53, 149, 207, 278, 348, 349
ScrFI	CCNGG	3 cut(s)	325, 347, 352
SduI	GDGCHC	1 cut(s)	352
SetI	ASST	9 cut(s)	26, 67, 123, 163, 192, 197, 344, 390, 547
SfaNI	GCATC	1 cut(s)	406
SinI	GGWCC	4 cut(s)	53, 149, 207, 278
Sse9I	AATT	2 cut(s)	332, 500
SsiI	CCGC	1 cut(s)	321
StyD4I	CCNGG	3 cut(s)	323, 345, 350
StyI	CCWWGG	1 cut(s)	218
TaaI	ACNGT	2 cut(s)	53, 149
TaqI	TCGA	4 cut(s)	252, 309, 336, 489
TasI	AATT	2 cut(s)	332, 500
TfiI	GAWTC	2 cut(s)	254, 311
Tru1I	TTAA	1 cut(s)	468
Tru9I	TTAA	1 cut(s)	468
TscAI	CASTG	2 cut(s)	412, 443
TseI	GCWGC	5 cut(s)	65, 68, 161, 460, 542
TspDTI	ATGAA	3 cut(s)	344, 381, 443
TspGWI	ACGGA	1 cut(s)	373
TspRI	CASTG	2 cut(s)	412, 443
Van91I	CCANNNNNTGG	1 cut(s)	274
VpaK11BI	GGWCC	4 cut(s)	53, 149, 207, 278
XapI	RAATTY	1 cut(s)	332
XmiI	GTMKAC	1 cut(s)	243
Zsp2I	ATGCAT	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.