Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0004989

Physical Location & Seq

Genomic Coordinates Reverse (-)

29598592 .. 29604203

Gene Structure 5612 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG163900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGAGACTCGTACAAGCACATCCAGGGGCTCTAGTCGCCGCGCAAGCGAGTGGCGGCGATCTTGACTCGGTCGGCGGCGGGGATGTCGAGGCTGAGCATCTTGCTAAGTTTTATGAGTATTGCAAGGGCTTGAATCTTGCTAGAACTTTTCAATTTCCAACATGTTGTGAAATTTGCTTATCTGGGTCGGCGTTCTGTACCATTCTTTTGGACACCGCTAAAGTTAGGCTCCAGCTCCAAAAGAAAGCAGTTGTAGGGGATGCAGCTGATGCACCTAAATATAGGGGCTTGTTGGGTACTATGGCTACCATTGCTAGGGAAGAAGGTGCTCTGGCTATCATAGTGGCTAATCCAACGGACCTTGTAAAGGTTCGACTCCAAGCTGAAGGAAAATTGCCCGGCGGAGTTCCTAGGCATTACTCTGGAGCTAAAGATAATTATTTCACTATAGCGAGGCAGGAAGGTTTAGGAGCTCTATGGACTGGGCTGGGACCAAATGTAGCACAAAATGCTATTATAAATGCTGCTGAGCTAGCTAGTTATGATCAAGTGGAGGAGGTAATTGCTTTCAATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006865 GO:0006950 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009266 GO:0009409 GO:0009628 GO:0012505 GO:0015075 GO:0015171 GO:0015318 GO:0015672 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:1902600 GO:1903825 GO:1905039 GO:1990542 GO:1990845

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

192

Amino Acids

20.28

Weight (kDa)

5.62

Isoelectric Point (pI)

28.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	109 - 188	1.4e-15	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17960 AT1G17960
malus_domestica	MD15G1401700.v1.1 MD15G1402000.v1.1
rosa_chinensis	RchiOBHm_Chr4g0444231
rosa_laevigata	RLG00000005339 RLG00000005847 RLG00000008520 RLG00000020302
rosa_multiflora	Rmu_sc0000016.1_g000006 Rmu_sc0000987.1_g000022 Rmu_sc0014698.1_g000003
rosa_roxburghii	Rroxscaffold_3G00219500 Rroxscaffold_5G00384800
rosa_rugosa	Rorug03G0334500 Rorug07G0196800
rosa_samantha	Rh1BG152700 Rh1CG027000 Rh1DG185100 Rh2BG464200 Rh4AG158400 Rh4BG163900 Rh4CG184100 Rh4DG152900 Rh4DG153000 Rh5CG279500 Rh6BG190300 Rh7CG027100 Rh7DG026600 Rh7DG335900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	518
AccII	CGCG	1 cut(s)	41
AciI	CCGC	6 cut(s)	39, 54, 75, 78, 216, 402
AcsI	RAATTY	1 cut(s)	171
AcuI	CTGAAG	1 cut(s)	405
AfaI	GTAC	3 cut(s)	12, 199, 298
AfiI	CCNNNNNNNGG	2 cut(s)	315, 367
AflIII	ACRYGT	1 cut(s)	161
AgsI	TTSAA	3 cut(s)	133, 152, 571
AjnI	CCWGG	1 cut(s)	22
AluBI	AGCT	7 cut(s)	235, 266, 383, 428, 473, 532, 536
AluI	AGCT	7 cut(s)	235, 266, 383, 428, 473, 532, 536
Alw21I	GWGCWC	2 cut(s)	331, 475
ApeKI	GCWGC	2 cut(s)	263, 524
ApoI	RAATTY	1 cut(s)	171
AspA2I	CCTAGG	1 cut(s)	410
AspLEI	GCGC	1 cut(s)	43
AspS9I	GGNCC	2 cut(s)	358, 491
AsuC2I	CCSGG	1 cut(s)	399
AsuNHI	GCTAGC	1 cut(s)	532
AvaII	GGWCC	2 cut(s)	358, 491
AvrII	CCTAGG	1 cut(s)	410
BanII	GRGCYC	2 cut(s)	31, 475
Bbv12I	GWGCWC	2 cut(s)	331, 475
BbvI	GCAGC	2 cut(s)	275, 511
BciT130I	CCWGG	1 cut(s)	24
BclI	TGATCA	1 cut(s)	544
BcnI	CCSGG	1 cut(s)	399
BfaI	CTAG	6 cut(s)	32, 141, 315, 411, 533, 537
BfmI	CTRYAG	1 cut(s)	447
BisI	GCNGC	5 cut(s)	39, 55, 76, 264, 525
BlnI	CCTAGG	1 cut(s)	410
BlpI	GCTNAGC	2 cut(s)	93, 528
BlsI	GCNGC	5 cut(s)	40, 56, 77, 265, 526
Bme1390I	CCNGG	2 cut(s)	24, 399
Bme18I	GGWCC	2 cut(s)	358, 491
BmgT120I	GGNCC	2 cut(s)	358, 491
BmiI	GGNNCC	2 cut(s)	230, 492
BmrFI	CCNGG	2 cut(s)	24, 399
BmrI	ACTGGG	1 cut(s)	492
BmsI	GCATC	3 cut(s)	106, 250, 259
BmtI	GCTAGC	1 cut(s)	536
BmuI	ACTGGG	1 cut(s)	492
BpmI	CTGGAG	2 cut(s)	215, 444
Bpu1102I	GCTNAGC	2 cut(s)	93, 528
BpuMI	CCSGG	1 cut(s)	399
BsaJI	CCNNGG	2 cut(s)	23, 410
Bsc4I	CCNNNNNNNGG	2 cut(s)	315, 367
Bse1I	ACTGG	1 cut(s)	487
Bse3DI	GCAATG	1 cut(s)	309
BseBI	CCWGG	1 cut(s)	24
BseDI	CCNNGG	2 cut(s)	23, 410
BseGI	GGATG	3 cut(s)	19, 88, 265
BseLI	CCNNNNNNNGG	2 cut(s)	315, 367
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	2 cut(s)	84, 519
BseNI	ACTGG	1 cut(s)	487
BseRI	GAGGAG	1 cut(s)	569
BseXI	GCAGC	2 cut(s)	275, 511
BseYI	CCCAGC	1 cut(s)	487
Bsh1236I	CGCG	1 cut(s)	41
Bsh1285I	CGRYCG	1 cut(s)	72
BsiEI	CGRYCG	1 cut(s)	72
BsiHKAI	GWGCWC	2 cut(s)	331, 475
BsiSI	CCGG	1 cut(s)	399
BslFI	GGGAC	1 cut(s)	504
BslI	CCNNNNNNNGG	2 cut(s)	315, 367
BsmFI	GGGAC	1 cut(s)	504
Bsp1286I	GDGCHC	3 cut(s)	31, 331, 475
Bsp143I	GATC	2 cut(s)	58, 544
Bsp1720I	GCTNAGC	2 cut(s)	93, 528
BspACI	CCGC	6 cut(s)	39, 54, 75, 78, 216, 402
BspCNI	CTCAG	2 cut(s)	85, 520
BspFNI	CGCG	1 cut(s)	41
BspLI	GGNNCC	2 cut(s)	230, 492
BspOI	GCTAGC	1 cut(s)	536
BsrDI	GCAATG	1 cut(s)	309
BsrI	ACTGG	1 cut(s)	487
BssECI	CCNNGG	2 cut(s)	23, 410
BssMI	GATC	2 cut(s)	58, 544
BssT1I	CCWWGG	1 cut(s)	410
Bst2UI	CCWGG	1 cut(s)	24
BstAPI	GCANNNNNTGC	2 cut(s)	269, 509
BstC8I	GCNNGC	2 cut(s)	45, 534
BstDEI	CTNAG	3 cut(s)	93, 105, 528
BstENI	CCTNNNNNAGG	1 cut(s)	365
BstF5I	GGATG	3 cut(s)	19, 88, 265
BstFNI	CGCG	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	2 cut(s)	61, 547
BstMBI	GATC	2 cut(s)	58, 544
BstMCI	CGRYCG	1 cut(s)	72
BstMWI	GCNNNNNNNGC	6 cut(s)	35, 44, 269, 311, 509, 533
BstNI	CCWGG	1 cut(s)	24
BstNSI	RCATGY	1 cut(s)	165
BstSCI	CCNGG	2 cut(s)	22, 397
BstSFI	CTRYAG	1 cut(s)	447
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	2 cut(s)	275, 511
BstXI	CCANNNNNNTGG	1 cut(s)	208
BtsCI	GGATG	3 cut(s)	19, 88, 265
Cac8I	GCNNGC	2 cut(s)	45, 534
CfoI	GCGC	1 cut(s)	43
Cfr13I	GGNCC	2 cut(s)	358, 491
Csp6I	GTAC	3 cut(s)	11, 198, 297
CviAII	CATG	1 cut(s)	162
CviQI	GTAC	3 cut(s)	11, 198, 297
DdeI	CTNAG	3 cut(s)	93, 105, 528
DpnI	GATC	2 cut(s)	60, 546
DpnII	GATC	2 cut(s)	58, 544
EciI	GGCGGA	1 cut(s)	417
Ecl136II	GAGCTC	1 cut(s)	473
Eco130I	CCWWGG	1 cut(s)	410
Eco24I	GRGCYC	2 cut(s)	31, 475
Eco47I	GGWCC	2 cut(s)	358, 491
Eco53kI	GAGCTC	1 cut(s)	473
Eco57I	CTGAAG	1 cut(s)	405
EcoICRI	GAGCTC	1 cut(s)	473
EcoNI	CCTNNNNNAGG	1 cut(s)	365
EcoRII	CCWGG	1 cut(s)	22
EcoT14I	CCWWGG	1 cut(s)	410
EcoT38I	GRGCYC	2 cut(s)	31, 475
ErhI	CCWWGG	1 cut(s)	410
FaeI	CATG	1 cut(s)	165
FaiI	YATR	9 cut(s)	114, 163, 282, 302, 341, 449, 478, 518, 543
FaqI	GGGAC	1 cut(s)	504
FatI	CATG	1 cut(s)	161
FauI	CCCGC	1 cut(s)	71
FbaI	TGATCA	1 cut(s)	544
Fnu4HI	GCNGC	5 cut(s)	39, 55, 76, 264, 525
FokI	GGATG	3 cut(s)	6, 95, 272
FriOI	GRGCYC	2 cut(s)	31, 475
Fsp4HI	GCNGC	5 cut(s)	39, 55, 76, 264, 525
FspBI	CTAG	6 cut(s)	32, 141, 315, 411, 533, 537
GlaI	GCGC	1 cut(s)	42
GluI	GCNGC	5 cut(s)	39, 55, 76, 264, 525
GsaI	CCCAGC	1 cut(s)	491
GsuI	CTGGAG	2 cut(s)	215, 444
HapII	CCGG	1 cut(s)	399
HhaI	GCGC	1 cut(s)	43
Hin1II	CATG	1 cut(s)	165
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HinfI	GANTC	4 cut(s)	6, 65, 133, 375
HpaII	CCGG	1 cut(s)	399
Hpy188I	TCNGA	1 cut(s)	578
Hpy188III	TCNNGA	2 cut(s)	62, 423
HpyAV	CCTTC	3 cut(s)	317, 380, 455
HpyCH4V	TGCA	3 cut(s)	123, 263, 272
HpyF10VI	GCNNNNNNNGC	6 cut(s)	35, 44, 269, 311, 509, 533
HpyF3I	CTNAG	3 cut(s)	93, 105, 528
Hsp92II	CATG	1 cut(s)	165
HspAI	GCGC	1 cut(s)	41
Ksp22I	TGATCA	1 cut(s)	544
Kzo9I	GATC	2 cut(s)	58, 544
LmnI	GCTCC	4 cut(s)	234, 240, 425, 470
Lsp1109I	GCAGC	2 cut(s)	275, 511
LweI	GCATC	3 cut(s)	106, 250, 259
MaeI	CTAG	6 cut(s)	32, 141, 315, 411, 533, 537
MalI	GATC	2 cut(s)	60, 546
MboI	GATC	2 cut(s)	58, 544
MboII	GAAGA	1 cut(s)	332
MhlI	GDGCHC	3 cut(s)	31, 331, 475
MluCI	AATT	5 cut(s)	152, 171, 392, 436, 561
MlyI	GAGTC	2 cut(s)	59, 369
MmeI	TCCRAC	2 cut(s)	182, 377
MnlI	CCTC	4 cut(s)	82, 447, 547, 550
MspA1I	CMGCKG	1 cut(s)	266
MspI	CCGG	1 cut(s)	399
MspR9I	CCNGG	2 cut(s)	24, 399
MvaI	CCWGG	1 cut(s)	24
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	6 cut(s)	35, 44, 269, 311, 509, 533
NciI	CCSGG	1 cut(s)	399
NdeII	GATC	2 cut(s)	58, 544
NheI	GCTAGC	1 cut(s)	532
NlaIII	CATG	1 cut(s)	165
NlaIV	GGNNCC	2 cut(s)	230, 492
NspI	RCATGY	1 cut(s)	165
PciI	ACATGT	1 cut(s)	161
PfeI	GAWTC	1 cut(s)	133
PflFI	GACNNNGTC	1 cut(s)	68
PkrI	GCNGC	5 cut(s)	40, 56, 77, 265, 526
PleI	GAGTC	2 cut(s)	59, 369
PpsI	GAGTC	2 cut(s)	59, 369
PscI	ACATGT	1 cut(s)	161
PsiI	TTATAA	1 cut(s)	518
Psp124BI	GAGCTC	1 cut(s)	475
Psp6I	CCWGG	1 cut(s)	22
PspFI	CCCAGC	1 cut(s)	487
PspGI	CCWGG	1 cut(s)	22
PspN4I	GGNNCC	2 cut(s)	230, 492
PspPI	GGNCC	2 cut(s)	358, 491
PsyI	GACNNNGTC	1 cut(s)	68
PvuII	CAGCTG	1 cut(s)	266
RsaI	GTAC	3 cut(s)	12, 199, 298
RsaNI	GTAC	3 cut(s)	11, 198, 297
SacI	GAGCTC	1 cut(s)	475
SatI	GCNGC	5 cut(s)	39, 55, 76, 264, 525
Sau3AI	GATC	2 cut(s)	58, 544
Sau96I	GGNCC	2 cut(s)	358, 491
SchI	GAGTC	2 cut(s)	59, 369
ScrFI	CCNGG	2 cut(s)	24, 399
SduI	GDGCHC	3 cut(s)	31, 331, 475
SfaNI	GCATC	3 cut(s)	106, 250, 259
SfcI	CTRYAG	1 cut(s)	447
SinI	GGWCC	2 cut(s)	358, 491
Sse9I	AATT	5 cut(s)	152, 171, 392, 436, 561
SsiI	CCGC	6 cut(s)	39, 54, 75, 78, 216, 402
SspMI	CTAG	6 cut(s)	32, 141, 315, 411, 533, 537
SstI	GAGCTC	1 cut(s)	475
StyD4I	CCNGG	2 cut(s)	22, 397
StyI	CCWWGG	1 cut(s)	410
TaqI	TCGA	2 cut(s)	87, 373
TaqII	GACCGA	1 cut(s)	58
TasI	AATT	5 cut(s)	152, 171, 392, 436, 561
TauI	GCSGC	3 cut(s)	41, 57, 78
TfiI	GAWTC	1 cut(s)	133
TseI	GCWGC	2 cut(s)	263, 524
TspGWI	ACGGA	1 cut(s)	371
Tth111I	GACNNNGTC	1 cut(s)	68
VpaK11BI	GGWCC	2 cut(s)	358, 491
XagI	CCTNNNNNAGG	1 cut(s)	365
XapI	RAATTY	1 cut(s)	171
XceI	RCATGY	1 cut(s)	165
XmaJI	CCTAGG	1 cut(s)	410
XspI	CTAG	6 cut(s)	32, 141, 315, 411, 533, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.