Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000987.1

Orthogroup ID

OG0004989

Physical Location & Seq

Genomic Coordinates Forward (+)

85738 .. 88362

Gene Structure 2625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000987.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ctgagcttggttggccggaccgaccctccttggatcttatccctgtgtcgcgtctacgcaatcgattccagcccgatccaccaaatgggtcctgccccatctcctccacccatcatcatcgattccaccaccgcccagatgaaatccgagagcttcggggcccagacacagttaaatgaaggggatggtgcattttacaggccaaagatagataccaatgtatctgatgcattgaacatgaagtttcagtgtgcaacattacagggaaaaatacttttgttgcagcttgattttcagctacctgctcgctttgagctgtattactcagcagagggtgaagaaggcaataaggaggcacctgttatgatacacatagccattttcggttatgttgagcgtatgtttgctatactgctggagcactataaggggaaatgttctctagcaataacagtggcaaatccaagtgatcttgtaaaagttagacttcaagctgagagaaaattgccaccaggcgcaccaaggcgctattctggcacattgaatgcgtcttccaccatcttgagacaggaaggagctggggttctttggactggaattggacctaacattgcacgcaatgctatgattaatgctgctgaactagctagttgtgatcaagtgaagcaggttaactcatccttaatatggtttcaaacgaaacagatgtaccgatttggttggtttaggatgaagctcaagttggttggaggtgactctgctggcatggtgttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004829 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006435 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0030312 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071944 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon TGS tRNA-synt_2b tRNA_SAD

Protein Analysis

258

Amino Acids

28.42

Weight (kDa)

8.85

Isoelectric Point (pI)

46.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17960 AT1G17960
malus_domestica	MD15G1401700.v1.1 MD15G1402000.v1.1
rosa_chinensis	RchiOBHm_Chr4g0444231
rosa_laevigata	RLG00000005339 RLG00000005847 RLG00000008520 RLG00000020302
rosa_multiflora	Rmu_sc0000016.1_g000006 Rmu_sc0000987.1_g000022 Rmu_sc0014698.1_g000003
rosa_roxburghii	Rroxscaffold_3G00219500 Rroxscaffold_5G00384800
rosa_rugosa	Rorug03G0334500 Rorug07G0196800
rosa_samantha	Rh1BG152700 Rh1CG027000 Rh1DG185100 Rh2BG464200 Rh4AG158400 Rh4BG163900 Rh4CG184100 Rh4DG152900 Rh4DG153000 Rh5CG279500 Rh6BG190300 Rh7CG027100 Rh7DG026600 Rh7DG335900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	310, 658
AccB1I	GGYRCC	1 cut(s)	355
AccB7I	CCANNNNNTGG	1 cut(s)	85
AccI	GTMKAC	1 cut(s)	54
AccII	CGCG	1 cut(s)	51
AciI	CCGC	1 cut(s)	132
AclWI	GGATC	2 cut(s)	41, 70
AcoI	YGGCCR	1 cut(s)	13
AfaI	GTAC	1 cut(s)	710
AfiI	CCNNNNNNNGG	2 cut(s)	85, 687
AgsI	TTSAA	4 cut(s)	235, 491, 544, 695
AjnI	CCWGG	1 cut(s)	511
AjuI	GAANNNNNNNTTGG	4 cut(s)	514, 546, 725, 757
AloI	GAACNNNNNNTCC	2 cut(s)	567, 599
AluBI	AGCT	9 cut(s)	6, 153, 286, 298, 316, 494, 578, 647, 736
AluI	AGCT	9 cut(s)	6, 153, 286, 298, 316, 494, 578, 647, 736
Alw21I	GWGCWC	1 cut(s)	423
Alw26I	GTCTC	1 cut(s)	559
AlwI	GGATC	2 cut(s)	41, 70
AoxI	GGCC	3 cut(s)	13, 159, 200
ApaI	GGGCCC	1 cut(s)	163
ApeKI	GCWGC	2 cut(s)	283, 635
AseI	ATTAAT	1 cut(s)	630
AspLEI	GCGC	2 cut(s)	518, 528
AspS9I	GGNCC	5 cut(s)	18, 89, 159, 160, 602
AsuHPI	GGTGA	2 cut(s)	347, 764
AvaII	GGWCC	3 cut(s)	18, 89, 602
BaeGI	GKGCMC	1 cut(s)	163
BaeI	ACNNNNGTAYC	6 cut(s)	204, 204, 237, 237, 692, 725
BanI	GGYRCC	1 cut(s)	355
BanII	GRGCYC	1 cut(s)	163
BbsI	GAAGAC	1 cut(s)	543
Bbv12I	GWGCWC	1 cut(s)	423
BbvI	GCAGC	2 cut(s)	295, 622
BccI	CCATC	4 cut(s)	106, 119, 179, 566
BciT130I	CCWGG	1 cut(s)	513
BclI	TGATCA	1 cut(s)	655
BcoDI	GTCTC	1 cut(s)	559
BfaI	CTAG	3 cut(s)	443, 644, 648
BfoI	RGCGCY	1 cut(s)	529
BfuAI	ACCTGC	2 cut(s)	310, 658
BisI	GCNGC	2 cut(s)	284, 636
BlsI	GCNGC	2 cut(s)	285, 637
Bme1390I	CCNGG	1 cut(s)	513
Bme18I	GGWCC	3 cut(s)	18, 89, 602
BmgT120I	GGNCC	5 cut(s)	18, 89, 159, 160, 602
BmiI	GGNNCC	4 cut(s)	90, 160, 161, 357
BmrFI	CCNGG	1 cut(s)	513
BmsI	GCATC	1 cut(s)	217
BpiI	GAAGAC	1 cut(s)	543
BpmI	CTGGAG	1 cut(s)	437
BpuEI	CTTGAG	2 cut(s)	583, 722
Bsa29I	ATCGAT	2 cut(s)	63, 120
BsaJI	CCNNGG	2 cut(s)	29, 521
BsaXI	ACNNNNNCTCC	4 cut(s)	10, 40, 567, 597
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 687
Bse1I	ACTGG	1 cut(s)	598
Bse3DI	GCAATG	2 cut(s)	609, 625
BseBI	CCWGG	1 cut(s)	513
BseCI	ATCGAT	2 cut(s)	63, 120
BseDI	CCNNGG	2 cut(s)	29, 521
BseGI	GGATG	3 cut(s)	190, 677, 735
BseLI	CCNNNNNNNGG	2 cut(s)	85, 687
BseMI	GCAATG	2 cut(s)	609, 625
BseMII	CTCAG	2 cut(s)	339, 486
BseNI	ACTGG	1 cut(s)	598
BseRI	GAGGAG	1 cut(s)	93
BseSI	GKGCMC	1 cut(s)	163
BseXI	GCAGC	2 cut(s)	295, 622
BseYI	CCCAGC	1 cut(s)	578
Bsh1236I	CGCG	1 cut(s)	51
BshFI	GGCC	3 cut(s)	15, 161, 202
BshNI	GGYRCC	1 cut(s)	355
BshVI	ATCGAT	2 cut(s)	63, 120
BsiHKAI	GWGCWC	1 cut(s)	423
BsiSI	CCGG	1 cut(s)	16
BslI	CCNNNNNNNGG	2 cut(s)	85, 687
BsmAI	GTCTC	1 cut(s)	559
BsmI	GAATGC	1 cut(s)	550
BsnI	GGCC	3 cut(s)	15, 161, 202
Bsp120I	GGGCCC	1 cut(s)	159
Bsp1286I	GDGCHC	2 cut(s)	163, 423
Bsp143I	GATC	4 cut(s)	33, 75, 469, 655
BspACI	CCGC	1 cut(s)	132
BspANI	GGCC	3 cut(s)	15, 161, 202
BspCNI	CTCAG	2 cut(s)	338, 487
BspDI	ATCGAT	2 cut(s)	63, 120
BspFNI	CGCG	1 cut(s)	51
BspLI	GGNNCC	4 cut(s)	90, 160, 161, 357
BspMI	ACCTGC	2 cut(s)	310, 658
BspPI	GGATC	2 cut(s)	41, 70
BspT107I	GGYRCC	1 cut(s)	355
BsrDI	GCAATG	2 cut(s)	609, 625
BsrI	ACTGG	1 cut(s)	598
BssECI	CCNNGG	2 cut(s)	29, 521
BssMI	GATC	4 cut(s)	33, 75, 469, 655
BssT1I	CCWWGG	2 cut(s)	29, 521
Bst2UI	CCWGG	1 cut(s)	513
Bst4CI	ACNGT	2 cut(s)	171, 454
BstAPI	GCANNNNNTGC	1 cut(s)	620
BstC8I	GCNNGC	3 cut(s)	307, 616, 763
BstDEI	CTNAG	3 cut(s)	2, 325, 495
BstF5I	GGATG	3 cut(s)	190, 677, 735
BstFNI	CGCG	1 cut(s)	51
BstH2I	RGCGCY	1 cut(s)	529
BstHHI	GCGC	2 cut(s)	518, 528
BstKTI	GATC	4 cut(s)	36, 78, 472, 658
BstMAI	GTCTC	1 cut(s)	559
BstMBI	GATC	4 cut(s)	33, 75, 469, 655
BstMWI	GCNNNNNNNGC	4 cut(s)	12, 534, 620, 644
BstNI	CCWGG	1 cut(s)	513
BstSCI	CCNGG	1 cut(s)	511
BstSLI	GKGCMC	1 cut(s)	163
BstUI	CGCG	1 cut(s)	51
BstV1I	GCAGC	2 cut(s)	295, 622
BstV2I	GAAGAC	1 cut(s)	543
BstX2I	RGATCY	1 cut(s)	33
BstYI	RGATCY	1 cut(s)	33
Bsu15I	ATCGAT	2 cut(s)	63, 120
BsuRI	GGCC	3 cut(s)	15, 161, 202
BsuTUI	ATCGAT	2 cut(s)	63, 120
BtsCI	GGATG	3 cut(s)	190, 677, 735
BtsIMutI	CAGTG	2 cut(s)	254, 459
BveI	ACCTGC	2 cut(s)	310, 658
Cac8I	GCNNGC	3 cut(s)	307, 616, 763
CfoI	GCGC	2 cut(s)	518, 528
Cfr13I	GGNCC	5 cut(s)	18, 89, 159, 160, 602
ClaI	ATCGAT	2 cut(s)	63, 120
CpoI	CGGWCCG	1 cut(s)	18
CseI	GACGC	2 cut(s)	40, 537
Csp6I	GTAC	1 cut(s)	709
CspCI	CAANNNNNGTGG	2 cut(s)	435, 470
CspI	CGGWCCG	1 cut(s)	18
CviAII	CATG	2 cut(s)	238, 766
CviQI	GTAC	1 cut(s)	709
DdeI	CTNAG	3 cut(s)	2, 325, 495
DpnI	GATC	4 cut(s)	35, 77, 471, 657
DpnII	GATC	4 cut(s)	33, 75, 469, 655
EaeI	YGGCCR	1 cut(s)	13
Eco130I	CCWWGG	2 cut(s)	29, 521
Eco24I	GRGCYC	1 cut(s)	163
Eco47I	GGWCC	3 cut(s)	18, 89, 602
EcoO109I	RGGNCCY	2 cut(s)	89, 159
EcoRII	CCWGG	1 cut(s)	511
EcoT14I	CCWWGG	2 cut(s)	29, 521
EcoT22I	ATGCAT	1 cut(s)	232
EcoT38I	GRGCYC	1 cut(s)	163
ErhI	CCWWGG	2 cut(s)	29, 521
FaeI	CATG	2 cut(s)	241, 769
FalI	AAGNNNNNCTT	2 cut(s)	471, 503
FatI	CATG	2 cut(s)	237, 765
FbaI	TGATCA	1 cut(s)	655
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	2 cut(s)	284, 636
FokI	GGATG	3 cut(s)	197, 664, 742
FriOI	GRGCYC	1 cut(s)	163
Fsp4HI	GCNGC	2 cut(s)	284, 636
FspBI	CTAG	3 cut(s)	443, 644, 648
GlaI	GCGC	2 cut(s)	517, 527
GluI	GCNGC	2 cut(s)	284, 636
GsaI	CCCAGC	1 cut(s)	582
GsuI	CTGGAG	1 cut(s)	437
HaeII	RGCGCY	1 cut(s)	529
HaeIII	GGCC	3 cut(s)	15, 161, 202
HapII	CCGG	1 cut(s)	16
HgaI	GACGC	2 cut(s)	40, 537
HhaI	GCGC	2 cut(s)	518, 528
Hin1II	CATG	2 cut(s)	241, 769
Hin6I	GCGC	2 cut(s)	516, 526
HinP1I	GCGC	2 cut(s)	516, 526
HincII	GTYRAC	1 cut(s)	673
HindII	GTYRAC	1 cut(s)	673
HinfI	GANTC	3 cut(s)	65, 122, 755
HpaI	GTTAAC	1 cut(s)	673
HpaII	CCGG	1 cut(s)	16
HphI	GGTGA	2 cut(s)	347, 764
Hpy166II	GTNNAC	2 cut(s)	55, 673
Hpy188I	TCNGA	2 cut(s)	148, 226
Hpy188III	TCNNGA	1 cut(s)	562
Hpy8I	GTNNAC	2 cut(s)	55, 673
HpyAV	CCTTC	3 cut(s)	173, 335, 566
HpyCH4III	ACNGT	2 cut(s)	171, 454
HpyCH4V	TGCA	5 cut(s)	191, 230, 254, 283, 614
HpyF10VI	GCNNNNNNNGC	4 cut(s)	12, 534, 620, 644
HpyF3I	CTNAG	3 cut(s)	2, 325, 495
Hsp92II	CATG	2 cut(s)	241, 769
HspAI	GCGC	2 cut(s)	516, 526
Ksp22I	TGATCA	1 cut(s)	655
KspAI	GTTAAC	1 cut(s)	673
Kzo9I	GATC	4 cut(s)	33, 75, 469, 655
LmnI	GCTCC	2 cut(s)	418, 575
Lsp1109I	GCAGC	2 cut(s)	295, 622
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	3 cut(s)	443, 644, 648
MaeIII	GTNAC	1 cut(s)	752
MalI	GATC	4 cut(s)	35, 77, 471, 657
MboI	GATC	4 cut(s)	33, 75, 469, 655
MboII	GAAGA	2 cut(s)	350, 543
MflI	RGATCY	1 cut(s)	33
MhlI	GDGCHC	2 cut(s)	163, 423
MluCI	AATT	2 cut(s)	503, 597
MlyI	GAGTC	1 cut(s)	749
MmeI	TCCRAC	1 cut(s)	727
MnlI	CCTC	5 cut(s)	36, 114, 325, 346, 743
Mph1103I	ATGCAT	1 cut(s)	232
MseI	TTAA	4 cut(s)	173, 630, 672, 683
MspI	CCGG	1 cut(s)	16
MspR9I	CCNGG	1 cut(s)	513
Mva1269I	GAATGC	1 cut(s)	550
MvaI	CCWGG	1 cut(s)	513
MvnI	CGCG	1 cut(s)	51
MwoI	GCNNNNNNNGC	4 cut(s)	12, 534, 620, 644
NdeII	GATC	4 cut(s)	33, 75, 469, 655
NlaIII	CATG	2 cut(s)	241, 769
NlaIV	GGNNCC	4 cut(s)	90, 160, 161, 357
NmuCI	GTSAC	1 cut(s)	752
NsiI	ATGCAT	1 cut(s)	232
PctI	GAATGC	1 cut(s)	550
PfeI	GAWTC	2 cut(s)	65, 122
PflMI	CCANNNNNTGG	1 cut(s)	85
PkrI	GCNGC	2 cut(s)	285, 637
PleI	GAGTC	1 cut(s)	749
PpsI	GAGTC	1 cut(s)	749
PpuMI	RGGWCCY	1 cut(s)	89
PshBI	ATTAAT	1 cut(s)	630
Psp5II	RGGWCCY	1 cut(s)	89
Psp6I	CCWGG	1 cut(s)	511
PspFI	CCCAGC	1 cut(s)	578
PspGI	CCWGG	1 cut(s)	511
PspN4I	GGNNCC	4 cut(s)	90, 160, 161, 357
PspOMI	GGGCCC	1 cut(s)	159
PspPI	GGNCC	5 cut(s)	18, 89, 159, 160, 602
PspPPI	RGGWCCY	1 cut(s)	89
PsuI	RGATCY	1 cut(s)	33
RsaI	GTAC	1 cut(s)	710
RsaNI	GTAC	1 cut(s)	709
Rsr2I	CGGWCCG	1 cut(s)	18
RsrII	CGGWCCG	1 cut(s)	18
SaqAI	TTAA	4 cut(s)	173, 630, 672, 683
SatI	GCNGC	2 cut(s)	284, 636
Sau3AI	GATC	4 cut(s)	33, 75, 469, 655
Sau96I	GGNCC	5 cut(s)	18, 89, 159, 160, 602
SchI	GAGTC	1 cut(s)	749
ScrFI	CCNGG	1 cut(s)	513
SduI	GDGCHC	2 cut(s)	163, 423
SfaNI	GCATC	1 cut(s)	217
SinI	GGWCC	3 cut(s)	18, 89, 602
SmlI	CTYRAG	2 cut(s)	562, 737
SmoI	CTYRAG	2 cut(s)	562, 737
Sse9I	AATT	2 cut(s)	503, 597
SsiI	CCGC	1 cut(s)	132
SspMI	CTAG	3 cut(s)	443, 644, 648
StyD4I	CCNGG	1 cut(s)	511
StyI	CCWWGG	2 cut(s)	29, 521
TaaI	ACNGT	2 cut(s)	171, 454
TaqI	TCGA	2 cut(s)	63, 120
TaqII	GACCGA	1 cut(s)	35
TasI	AATT	2 cut(s)	503, 597
TfiI	GAWTC	2 cut(s)	65, 122
Tru1I	TTAA	4 cut(s)	173, 630, 672, 683
Tru9I	TTAA	4 cut(s)	173, 630, 672, 683
TscAI	CASTG	2 cut(s)	254, 459
TseFI	GTSAC	1 cut(s)	752
TseI	GCWGC	2 cut(s)	283, 635
Tsp45I	GTSAC	1 cut(s)	752
TspDTI	ATGAA	4 cut(s)	155, 192, 254, 746
TspRI	CASTG	2 cut(s)	254, 459
Van91I	CCANNNNNTGG	1 cut(s)	85
VpaK11BI	GGWCC	3 cut(s)	18, 89, 602
VspI	ATTAAT	1 cut(s)	630
XmiI	GTMKAC	1 cut(s)	54
XspI	CTAG	3 cut(s)	443, 644, 648
Zsp2I	ATGCAT	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.