Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004989

Physical Location & Seq

Genomic Coordinates Reverse (-)

35337691 .. 35370209

Gene Structure 32519 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG190300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGAAATGGAACTATACCCGACCGGAACCGGGTCGAGCTTGCCGGACTGTTCACACGCCTGCGGGCCATTATATGTTCTGGATGAATTAATCAAAATGCTGAGGTTTTCCAGTTGTCACCCAAGCATTCAAGATGTGAATTGTATGTTCAAGTTATTTGAGCTGTCGATTGGCTATGACTTTGACTATGATGAATACCACAGAAATGAGATAGATCTGCCAAGGTATTGCATCTCATATACTTTGTCAGTTTGTGCCTCATTGTGCCTCAGAATGATTGCAAATGAAGGGGATGGTGCATTTTACAGACCAAAGATAGATACCCATGTATCTGATGCATTGAACATGAAGTTTCAGTGCGCAACATTACAGGAAGGAGTTGGGGTTCTCTGGACTGGAATTGGACCTAACATTGCACGTAATGCTATGATTAATGCTGCTGAACTAGCCAGATATGATCAAGTGAAGCAATGTTGTCACTCATCTTTTTGCTGGTCTGGGGATTATATGGTTGAAAAGCTTGGCATAGAGTTTGTTTTTGCAGGTCAGTGTGGATTAAAGATGGGCAGATCTGGTACCTCTCCCTTGACAATAATGCAGTTTCATTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006865 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009506 GO:0009507 GO:0009536 GO:0009853 GO:0009987 GO:0015075 GO:0015171 GO:0015318 GO:0015672 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022857 GO:0030054 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1903825 GO:1905039 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

203

Amino Acids

22.76

Weight (kDa)

5.14

Isoelectric Point (pI)

43.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17960 AT1G17960
malus_domestica	MD15G1401700.v1.1 MD15G1402000.v1.1
rosa_chinensis	RchiOBHm_Chr4g0444231
rosa_laevigata	RLG00000005339 RLG00000005847 RLG00000008520 RLG00000020302
rosa_multiflora	Rmu_sc0000016.1_g000006 Rmu_sc0000987.1_g000022 Rmu_sc0014698.1_g000003
rosa_roxburghii	Rroxscaffold_3G00219500 Rroxscaffold_5G00384800
rosa_rugosa	Rorug03G0334500 Rorug07G0196800
rosa_samantha	Rh1BG152700 Rh1CG027000 Rh1DG185100 Rh2BG464200 Rh4AG158400 Rh4BG163900 Rh4CG184100 Rh4DG152900 Rh4DG153000 Rh5CG279500 Rh6BG190300 Rh7CG027100 Rh7DG026600 Rh7DG335900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	361
Acc36I	ACCTGC	1 cut(s)	533
Acc65I	GGTACC	1 cut(s)	575
AccB1I	GGYRCC	1 cut(s)	575
AciI	CCGC	1 cut(s)	63
AfaI	GTAC	1 cut(s)	577
AfiI	CCNNNNNNNGG	1 cut(s)	30
AgsI	TTSAA	4 cut(s)	131, 151, 343, 515
AloI	GAACNNNNNNTCC	2 cut(s)	369, 401
AluBI	AGCT	3 cut(s)	39, 163, 520
AluI	AGCT	3 cut(s)	39, 163, 520
AoxI	GGCC	1 cut(s)	65
ApeKI	GCWGC	1 cut(s)	437
AseI	ATTAAT	2 cut(s)	89, 432
Asp718I	GGTACC	1 cut(s)	575
AspLEI	GCGC	1 cut(s)	362
AspS9I	GGNCC	2 cut(s)	65, 404
AsuC2I	CCSGG	1 cut(s)	31
AsuHPI	GGTGA	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	404
BaeI	ACNNNNGTAYC	4 cut(s)	312, 312, 345, 345
BanI	GGYRCC	1 cut(s)	575
BbvCI	CCTCAGC	1 cut(s)	101
BbvI	GCAGC	1 cut(s)	424
BccI	CCATC	2 cut(s)	287, 556
BclI	TGATCA	1 cut(s)	457
BcnI	CCSGG	1 cut(s)	31
BfaI	CTAG	1 cut(s)	446
BfuAI	ACCTGC	1 cut(s)	533
BglII	AGATCT	2 cut(s)	214, 569
BisI	GCNGC	1 cut(s)	438
BlsI	GCNGC	1 cut(s)	439
Bme1390I	CCNGG	1 cut(s)	31
Bme18I	GGWCC	1 cut(s)	404
BmgT120I	GGNCC	2 cut(s)	65, 404
BmiI	GGNNCC	2 cut(s)	28, 577
BmrFI	CCNGG	1 cut(s)	31
BmsI	GCATC	2 cut(s)	240, 325
Bpu10I	CCTNAGC	1 cut(s)	101
BpuMI	CCSGG	1 cut(s)	31
BsaAI	YACGTR	1 cut(s)	419
BsaJI	CCNNGG	1 cut(s)	221
BsaWI	WCCGGW	1 cut(s)	23
BsaXI	ACNNNNNCTCC	2 cut(s)	369, 399
Bsc4I	CCNNNNNNNGG	1 cut(s)	30
Bse1I	ACTGG	2 cut(s)	111, 400
Bse3DI	GCAATG	3 cut(s)	411, 476, 604
BseDI	CCNNGG	1 cut(s)	221
BseGI	GGATG	2 cut(s)	88, 298
BseLI	CCNNNNNNNGG	1 cut(s)	30
BseMI	GCAATG	3 cut(s)	411, 476, 604
BseMII	CTCAG	2 cut(s)	92, 283
BseNI	ACTGG	2 cut(s)	111, 400
BseXI	GCAGC	1 cut(s)	424
Bsh1285I	CGRYCG	1 cut(s)	24
BshFI	GGCC	1 cut(s)	67
BshNI	GGYRCC	1 cut(s)	575
BsiEI	CGRYCG	1 cut(s)	24
BsiSI	CCGG	3 cut(s)	24, 30, 44
BslI	CCNNNNNNNGG	1 cut(s)	30
BsmI	GAATGC	1 cut(s)	126
BsnI	GGCC	1 cut(s)	67
Bsp143I	GATC	3 cut(s)	214, 457, 569
BspACI	CCGC	1 cut(s)	63
BspANI	GGCC	1 cut(s)	67
BspCNI	CTCAG	2 cut(s)	93, 282
BspLI	GGNNCC	2 cut(s)	28, 577
BspMI	ACCTGC	1 cut(s)	533
BspT107I	GGYRCC	1 cut(s)	575
BsrDI	GCAATG	3 cut(s)	411, 476, 604
BsrI	ACTGG	2 cut(s)	111, 400
BssECI	CCNNGG	1 cut(s)	221
BssMI	GATC	3 cut(s)	214, 457, 569
BssT1I	CCWWGG	1 cut(s)	221
Bst4CI	ACNGT	1 cut(s)	50
BstAPI	GCANNNNNTGC	1 cut(s)	422
BstBAI	YACGTR	1 cut(s)	419
BstC8I	GCNNGC	3 cut(s)	41, 61, 65
BstDEI	CTNAG	2 cut(s)	101, 269
BstF5I	GGATG	2 cut(s)	88, 298
BstHHI	GCGC	1 cut(s)	362
BstKTI	GATC	3 cut(s)	217, 460, 572
BstMBI	GATC	3 cut(s)	214, 457, 569
BstMCI	CGRYCG	1 cut(s)	24
BstMWI	GCNNNNNNNGC	2 cut(s)	422, 446
BstSCI	CCNGG	1 cut(s)	29
BstV1I	GCAGC	1 cut(s)	424
BstX2I	RGATCY	2 cut(s)	214, 569
BstYI	RGATCY	2 cut(s)	214, 569
BsuRI	GGCC	1 cut(s)	67
BtsCI	GGATG	2 cut(s)	88, 298
BtsIMutI	CAGTG	2 cut(s)	362, 554
BveI	ACCTGC	1 cut(s)	533
Cac8I	GCNNGC	3 cut(s)	41, 61, 65
CfoI	GCGC	1 cut(s)	362
Cfr13I	GGNCC	2 cut(s)	65, 404
Csp6I	GTAC	1 cut(s)	576
CviAII	CATG	2 cut(s)	326, 346
CviJI	RGCY	6 cut(s)	39, 67, 163, 174, 449, 520
CviKI_1	RGCY	6 cut(s)	39, 67, 163, 174, 449, 520
CviQI	GTAC	1 cut(s)	576
DdeI	CTNAG	2 cut(s)	101, 269
DpnI	GATC	3 cut(s)	216, 459, 571
DpnII	GATC	3 cut(s)	214, 457, 569
Eco130I	CCWWGG	1 cut(s)	221
Eco47I	GGWCC	1 cut(s)	404
EcoT14I	CCWWGG	1 cut(s)	221
EcoT22I	ATGCAT	1 cut(s)	340
ErhI	CCWWGG	1 cut(s)	221
FaeI	CATG	2 cut(s)	329, 349
FatI	CATG	2 cut(s)	325, 345
FauI	CCCGC	1 cut(s)	56
FbaI	TGATCA	1 cut(s)	457
Fnu4HI	GCNGC	1 cut(s)	438
FokI	GGATG	2 cut(s)	95, 305
Fsp4HI	GCNGC	1 cut(s)	438
FspBI	CTAG	1 cut(s)	446
FspI	TGCGCA	1 cut(s)	361
GlaI	GCGC	1 cut(s)	361
GluI	GCNGC	1 cut(s)	438
HaeIII	GGCC	1 cut(s)	67
HapII	CCGG	3 cut(s)	24, 30, 44
HhaI	GCGC	1 cut(s)	362
Hin1II	CATG	2 cut(s)	329, 349
Hin6I	GCGC	1 cut(s)	360
HinP1I	GCGC	1 cut(s)	360
HindIII	AAGCTT	1 cut(s)	518
HpaII	CCGG	3 cut(s)	24, 30, 44
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	1 cut(s)	53
Hpy188I	TCNGA	2 cut(s)	272, 334
Hpy188III	TCNNGA	3 cut(s)	80, 131, 391
Hpy8I	GTNNAC	1 cut(s)	53
HpyAV	CCTTC	2 cut(s)	281, 368
HpyCH4III	ACNGT	1 cut(s)	50
HpyCH4IV	ACGT	1 cut(s)	418
HpyCH4V	TGCA	7 cut(s)	231, 281, 299, 338, 416, 542, 598
HpyF10VI	GCNNNNNNNGC	2 cut(s)	422, 446
HpyF3I	CTNAG	2 cut(s)	101, 269
HpySE526I	ACGT	1 cut(s)	418
Hsp92II	CATG	2 cut(s)	329, 349
HspAI	GCGC	1 cut(s)	360
KpnI	GGTACC	1 cut(s)	579
Ksp22I	TGATCA	1 cut(s)	457
Kzo9I	GATC	3 cut(s)	214, 457, 569
Lsp1109I	GCAGC	1 cut(s)	424
LweI	GCATC	2 cut(s)	240, 325
MaeI	CTAG	1 cut(s)	446
MaeII	ACGT	1 cut(s)	418
MaeIII	GTNAC	2 cut(s)	116, 476
MalI	GATC	3 cut(s)	216, 459, 571
MboI	GATC	3 cut(s)	214, 457, 569
MflI	RGATCY	2 cut(s)	214, 569
MluCI	AATT	3 cut(s)	86, 139, 399
MnlI	CCTC	4 cut(s)	96, 268, 278, 589
Mph1103I	ATGCAT	1 cut(s)	340
MseI	TTAA	3 cut(s)	89, 432, 557
MslI	CAYNNNNRTG	1 cut(s)	204
MspI	CCGG	3 cut(s)	24, 30, 44
MspR9I	CCNGG	1 cut(s)	31
Mva1269I	GAATGC	1 cut(s)	126
MwoI	GCNNNNNNNGC	2 cut(s)	422, 446
NciI	CCSGG	1 cut(s)	31
NdeII	GATC	3 cut(s)	214, 457, 569
NlaIII	CATG	2 cut(s)	329, 349
NlaIV	GGNNCC	2 cut(s)	28, 577
NmuCI	GTSAC	2 cut(s)	116, 476
NsbI	TGCGCA	1 cut(s)	361
NsiI	ATGCAT	1 cut(s)	340
PctI	GAATGC	1 cut(s)	126
PkrI	GCNGC	1 cut(s)	439
Ppu21I	YACGTR	1 cut(s)	419
PshBI	ATTAAT	2 cut(s)	89, 432
PspN4I	GGNNCC	2 cut(s)	28, 577
PspPI	GGNCC	2 cut(s)	65, 404
PsuI	RGATCY	2 cut(s)	214, 569
RsaI	GTAC	1 cut(s)	577
RsaNI	GTAC	1 cut(s)	576
RseI	CAYNNNNRTG	1 cut(s)	204
SaqAI	TTAA	3 cut(s)	89, 432, 557
SatI	GCNGC	1 cut(s)	438
Sau3AI	GATC	3 cut(s)	214, 457, 569
Sau96I	GGNCC	2 cut(s)	65, 404
ScrFI	CCNGG	1 cut(s)	31
SetI	ASST	9 cut(s)	41, 107, 165, 227, 409, 421, 522, 547, 581
SfaNI	GCATC	2 cut(s)	240, 325
SinI	GGWCC	1 cut(s)	404
SmiMI	CAYNNNNRTG	1 cut(s)	204
Sse9I	AATT	3 cut(s)	86, 139, 399
SsiI	CCGC	1 cut(s)	63
SspMI	CTAG	1 cut(s)	446
StyD4I	CCNGG	1 cut(s)	29
StyI	CCWWGG	1 cut(s)	221
TaaI	ACNGT	1 cut(s)	50
TaiI	ACGT	1 cut(s)	421
TaqI	TCGA	2 cut(s)	35, 167
TasI	AATT	3 cut(s)	86, 139, 399
Tru1I	TTAA	3 cut(s)	89, 432, 557
Tru9I	TTAA	3 cut(s)	89, 432, 557
TscAI	CASTG	2 cut(s)	362, 554
TseFI	GTSAC	2 cut(s)	116, 476
TseI	GCWGC	1 cut(s)	437
Tsp45I	GTSAC	2 cut(s)	116, 476
TspDTI	ATGAA	5 cut(s)	99, 207, 300, 362, 593
TspRI	CASTG	2 cut(s)	362, 554
VpaK11BI	GGWCC	1 cut(s)	404
VspI	ATTAAT	2 cut(s)	89, 432
XspI	CTAG	1 cut(s)	446
Zsp2I	ATGCAT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.