Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0004989

Physical Location & Seq

Genomic Coordinates Forward (+)

65598673 .. 65602685

Gene Structure 4013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG464200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGTTGACGGGGATGTTTTGGAGGCAGTTTCCTTAATTGATGTTAGAAGGCGCTTTATTGAGGCATTAGCCTTTCAGTTTGGAAGACCAGTGGAAGCTGATCCGTGTGCAACATTACAGCTTGATTTTCAGCTACCTGCTCGCTTTGAGCTGTATTACTCAGCAGAGGGTGAAGAAGGCAAGAAGGAGGCACCTGTTATGATACACATAGTCATTTTGGGTTCTATTGAGCGTATGTTTGCTATACTGTTGGAACACTACAAGGGGAAATGTTTGCTTCCATTTGTTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004829 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006435 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0030312 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071944 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon TGS tRNA-synt_2b tRNA_SAD

Protein Analysis

97

Amino Acids

11.0

Weight (kDa)

4.92

Isoelectric Point (pI)

61.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_2b	PF00587	36 - 87	3.2e-06	tRNA synthetase class II core domain (G, H, P, S and T)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17960 AT1G17960
malus_domestica	MD15G1401700.v1.1 MD15G1402000.v1.1
rosa_chinensis	RchiOBHm_Chr4g0444231
rosa_laevigata	RLG00000005339 RLG00000005847 RLG00000008520 RLG00000020302
rosa_multiflora	Rmu_sc0000016.1_g000006 Rmu_sc0000987.1_g000022 Rmu_sc0014698.1_g000003
rosa_roxburghii	Rroxscaffold_3G00219500 Rroxscaffold_5G00384800
rosa_rugosa	Rorug03G0334500 Rorug07G0196800
rosa_samantha	Rh1BG152700 Rh1CG027000 Rh1DG185100 Rh2BG464200 Rh4AG158400 Rh4BG163900 Rh4CG184100 Rh4DG152900 Rh4DG153000 Rh5CG279500 Rh6BG190300 Rh7CG027100 Rh7DG026600 Rh7DG335900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	145
AccB1I	GGYRCC	1 cut(s)	190
AclWI	GGATC	1 cut(s)	95
AluBI	AGCT	4 cut(s)	98, 121, 133, 151
AluI	AGCT	4 cut(s)	98, 121, 133, 151
AlwI	GGATC	1 cut(s)	95
AspLEI	GCGC	1 cut(s)	54
AsuHPI	GGTGA	1 cut(s)	182
BanI	GGYRCC	1 cut(s)	190
BbsI	GAAGAC	1 cut(s)	91
BfoI	RGCGCY	1 cut(s)	55
BfuAI	ACCTGC	1 cut(s)	145
BmiI	GGNNCC	1 cut(s)	192
BpiI	GAAGAC	1 cut(s)	91
Bse1I	ACTGG	1 cut(s)	89
BseGI	GGATG	1 cut(s)	19
BseMII	CTCAG	1 cut(s)	174
BseNI	ACTGG	1 cut(s)	89
BshNI	GGYRCC	1 cut(s)	190
Bsp143I	GATC	1 cut(s)	100
BspCNI	CTCAG	1 cut(s)	173
BspLI	GGNNCC	1 cut(s)	192
BspMI	ACCTGC	1 cut(s)	145
BspPI	GGATC	1 cut(s)	95
BspT107I	GGYRCC	1 cut(s)	190
BsrI	ACTGG	1 cut(s)	89
BssMI	GATC	1 cut(s)	100
Bst4CI	ACNGT	1 cut(s)	249
BstC8I	GCNNGC	1 cut(s)	142
BstDEI	CTNAG	1 cut(s)	160
BstF5I	GGATG	1 cut(s)	19
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	1 cut(s)	54
BstKTI	GATC	1 cut(s)	103
BstMBI	GATC	1 cut(s)	100
BstV2I	GAAGAC	1 cut(s)	91
BtsCI	GGATG	1 cut(s)	19
BtsIMutI	CAGTG	1 cut(s)	96
BveI	ACCTGC	1 cut(s)	145
Cac8I	GCNNGC	1 cut(s)	142
CfoI	GCGC	1 cut(s)	54
CviJI	RGCY	5 cut(s)	71, 98, 121, 133, 151
CviKI_1	RGCY	5 cut(s)	71, 98, 121, 133, 151
DdeI	CTNAG	1 cut(s)	160
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
FaiI	YATR	6 cut(s)	200, 209, 236, 245, 290, 292
FokI	GGATG	1 cut(s)	26
GlaI	GCGC	1 cut(s)	53
HaeII	RGCGCY	1 cut(s)	55
HhaI	GCGC	1 cut(s)	54
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HphI	GGTGA	1 cut(s)	182
Hpy166II	GTNNAC	1 cut(s)	7
Hpy8I	GTNNAC	1 cut(s)	7
HpyAV	CCTTC	3 cut(s)	42, 170, 178
HpyCH4III	ACNGT	1 cut(s)	249
HpyCH4V	TGCA	1 cut(s)	110
HpyF3I	CTNAG	1 cut(s)	160
HspAI	GCGC	1 cut(s)	52
Kzo9I	GATC	1 cut(s)	100
LpnPI	CCDG	3 cut(s)	102, 150, 207
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MboII	GAAGA	2 cut(s)	96, 185
MluCI	AATT	1 cut(s)	36
MmeI	TCCRAC	1 cut(s)	231
MnlI	CCTC	4 cut(s)	16, 55, 160, 181
MseI	TTAA	1 cut(s)	35
NdeII	GATC	1 cut(s)	100
NlaIV	GGNNCC	1 cut(s)	192
PspN4I	GGNNCC	1 cut(s)	192
SaqAI	TTAA	1 cut(s)	35
Sau3AI	GATC	1 cut(s)	100
SetI	ASST	6 cut(s)	100, 123, 135, 139, 153, 196
SgeI	CNNG	9 cut(s)	22, 101, 117, 134, 149, 153, 193, 206, 274
Sse9I	AATT	1 cut(s)	36
TaaI	ACNGT	1 cut(s)	249
TasI	AATT	1 cut(s)	36
Tru1I	TTAA	1 cut(s)	35
Tru9I	TTAA	1 cut(s)	35
TscAI	CASTG	1 cut(s)	96
TspGWI	ACGGA	1 cut(s)	93
TspRI	CASTG	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.