Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004989

Physical Location & Seq

Genomic Coordinates Forward (+)

66894553 .. 66895514

Gene Structure 962 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005339

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGTCGCCAAACATGTACAATATGCGACTTTGGGAAACATCTGGTCATGCTGCAAATTACAAAGAGAATATGTTTGTCTTTGAGATTGAGAAACAAGAGTTTGGATTGAAGCCGATGAATTGTCCCGGGCATTGTTTAATGTTTCAGCACAGAGTTCGTTCTTATAGAGAGCTTCCTCTTCGGCTGGCTGACTTCGGGGTTTTGCATCGGAATGAGGCCGGTGGTGCACTCACTGGATTGACTCGTGTCAGGAGATTCCAGCAGGATGATGCTCATATCTTTTGCAGGGAGTCACAAATAAAAGATGAAGTTAAGGGCGTCTTAGACTTCATCCAGTATGTCTACAATATATTTGGCTTCACTTTTGATCTGAAGCTATCAACAAGGCCAGAAAAGTACCTTGGAGAGATAGAAACATGGGAGAAAGCTGAGGCAGCTCTTACAGATGCATTAAATGAGAAGTTTCAGTGTGCAACATTACAGCTTGATTTTCAGCTACCTGCTCGCTTTGAGCTGTATTACTCAGCAGAGGGTGAAGAGGGCAAGAGGGAGGCACCTGTTATGATACACAGAGCCATTTTGGGTTCTGTCGAGCGTATGTTAGCTATACTGTTGGAGCACTACGAGGGGAAATGGCCGTTCTGGCTTAGTCCACGTCAGGCGATTGTTTGCCCTGTCTCGGACAAATCCCAGCCCTATGCTCAACAGGTCCGGGACAAGATCTTTCAGTCTGGTTATTGTGTTGATGTTGACACAAGTGATAGGACCATACAGAAGAAGGTACGAGAAGCTCAGATGGCTCAGTACAACTACATTCTAGTTGTTGGTGATCGAGGAGGAAGTCAAAACTGGACAGGTGAGGGTACGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004829 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006435 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0030312 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071944 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon TGS tRNA-synt_2b tRNA_SAD

Protein Analysis

291

Amino Acids

33.54

Weight (kDa)

6.03

Isoelectric Point (pI)

40.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_2b	PF00587	25 - 208	9.7e-44	tRNA synthetase class II core domain (G, H, P, S and T)
HGTP_anticodon	PF03129	220 - 278	9.4e-12	Anticodon binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17960 AT1G17960
malus_domestica	MD15G1401700.v1.1 MD15G1402000.v1.1
rosa_chinensis	RchiOBHm_Chr4g0444231
rosa_laevigata	RLG00000005339 RLG00000005847 RLG00000008520 RLG00000020302
rosa_multiflora	Rmu_sc0000016.1_g000006 Rmu_sc0000987.1_g000022 Rmu_sc0014698.1_g000003
rosa_roxburghii	Rroxscaffold_3G00219500 Rroxscaffold_5G00384800
rosa_rugosa	Rorug03G0334500 Rorug07G0196800
rosa_samantha	Rh1BG152700 Rh1CG027000 Rh1DG185100 Rh2BG464200 Rh4AG158400 Rh4BG163900 Rh4CG184100 Rh4DG152900 Rh4DG153000 Rh5CG279500 Rh6BG190300 Rh7CG027100 Rh7DG026600 Rh7DG335900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	508
AccB1I	GGYRCC	1 cut(s)	553
AccI	GTMKAC	1 cut(s)	342
AcoI	YGGCCR	1 cut(s)	635
AcuI	CTGAAG	1 cut(s)	392
AcyI	GRCGYC	1 cut(s)	318
AfaI	GTAC	5 cut(s)	17, 398, 783, 806, 865
AfiI	CCNNNNNNNGG	1 cut(s)	679
AflIII	ACRYGT	1 cut(s)	12
AgsI	TTSAA	1 cut(s)	109
AjiI	CACGTC	1 cut(s)	656
AjuI	GAANNNNNNNTTGG	2 cut(s)	384, 416
AluBI	AGCT	9 cut(s)	172, 376, 428, 437, 484, 496, 514, 605, 791
AluI	AGCT	9 cut(s)	172, 376, 428, 437, 484, 496, 514, 605, 791
Alw21I	GWGCWC	2 cut(s)	229, 621
Alw26I	GTCTC	1 cut(s)	682
Alw44I	GTGCAC	1 cut(s)	225
Ama87I	CYCGRG	1 cut(s)	125
AoxI	GGCC	3 cut(s)	216, 386, 635
ApaLI	GTGCAC	1 cut(s)	225
ApeKI	GCWGC	2 cut(s)	50, 434
AspS9I	GGNCC	2 cut(s)	709, 765
AsuC2I	CCSGG	3 cut(s)	126, 127, 713
AsuHPI	GGTGA	3 cut(s)	545, 839, 869
AvaI	CYCGRG	1 cut(s)	125
AvaII	GGWCC	2 cut(s)	709, 765
BaeGI	GKGCMC	1 cut(s)	229
BanI	GGYRCC	1 cut(s)	553
BauI	CACGAG	1 cut(s)	243
Bbv12I	GWGCWC	2 cut(s)	229, 621
BbvCI	CCTCAGC	1 cut(s)	429
BbvI	GCAGC	2 cut(s)	37, 446
BccI	CCATC	1 cut(s)	790
BceAI	ACGGC	1 cut(s)	622
BcgI	CGANNNNNNTGC	2 cut(s)	137, 171
BcnI	CCSGG	3 cut(s)	126, 127, 713
BcoDI	GTCTC	1 cut(s)	682
BfaI	CTAG	1 cut(s)	818
BfuAI	ACCTGC	1 cut(s)	508
BglI	GCCNNNNNGGC	1 cut(s)	643
BglII	AGATCT	1 cut(s)	720
BisI	GCNGC	2 cut(s)	51, 435
BlsI	GCNGC	2 cut(s)	52, 436
Bme1390I	CCNGG	3 cut(s)	126, 127, 713
Bme18I	GGWCC	2 cut(s)	709, 765
BmeT110I	CYCGRG	1 cut(s)	125
BmgBI	CACGTC	1 cut(s)	656
BmgT120I	GGNCC	2 cut(s)	709, 765
BmiI	GGNNCC	1 cut(s)	555
BmrFI	CCNGG	3 cut(s)	126, 127, 713
BmsI	GCATC	3 cut(s)	214, 259, 436
BoxI	GACNNNNGTC	1 cut(s)	245
Bpu10I	CCTNAGC	1 cut(s)	429
BpuMI	CCSGG	3 cut(s)	126, 127, 713
BsaHI	GRCGYC	1 cut(s)	318
BsaJI	CCNNGG	2 cut(s)	125, 400
Bsc4I	CCNNNNNNNGG	1 cut(s)	679
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	3 cut(s)	238, 334, 854
BseDI	CCNNGG	2 cut(s)	125, 400
BseGI	GGATG	2 cut(s)	271, 330
BseLI	CCNNNNNNNGG	1 cut(s)	679
BseMII	CTCAG	4 cut(s)	420, 537, 806, 815
BseNI	ACTGG	3 cut(s)	238, 334, 854
BseRI	GAGGAG	1 cut(s)	849
BseSI	GKGCMC	1 cut(s)	229
BseXI	GCAGC	2 cut(s)	37, 446
BseYI	CCCAGC	1 cut(s)	690
BshFI	GGCC	3 cut(s)	218, 388, 637
BshNI	GGYRCC	1 cut(s)	553
BsiHKAI	GWGCWC	2 cut(s)	229, 621
BsiHKCI	CYCGRG	1 cut(s)	125
BsiSI	CCGG	3 cut(s)	126, 219, 712
BslFI	GGGAC	2 cut(s)	108, 728
BslI	CCNNNNNNNGG	1 cut(s)	679
BsmAI	GTCTC	1 cut(s)	682
BsmFI	GGGAC	2 cut(s)	108, 728
BsnI	GGCC	3 cut(s)	218, 388, 637
BsoBI	CYCGRG	1 cut(s)	125
Bsp1286I	GDGCHC	2 cut(s)	229, 621
Bsp1407I	TGTACA	1 cut(s)	15
Bsp143I	GATC	3 cut(s)	367, 720, 829
BspANI	GGCC	3 cut(s)	218, 388, 637
BspCNI	CTCAG	4 cut(s)	421, 536, 805, 814
BspLI	GGNNCC	1 cut(s)	555
BspMI	ACCTGC	1 cut(s)	508
BspT107I	GGYRCC	1 cut(s)	553
BsrFI	RCCGGY	1 cut(s)	218
BsrGI	TGTACA	1 cut(s)	15
BsrI	ACTGG	3 cut(s)	238, 334, 854
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	2 cut(s)	125, 400
BssMI	GATC	3 cut(s)	367, 720, 829
BssNI	GRCGYC	1 cut(s)	318
BssSI	CACGAG	1 cut(s)	243
BssT1I	CCWWGG	1 cut(s)	400
Bst2BI	CACGAG	1 cut(s)	243
Bst4CI	ACNGT	1 cut(s)	612
Bst6I	CTCTTC	2 cut(s)	183, 531
BstACI	GRCGYC	1 cut(s)	318
BstAUI	TGTACA	1 cut(s)	15
BstC8I	GCNNGC	2 cut(s)	186, 505
BstDEI	CTNAG	6 cut(s)	322, 429, 523, 647, 792, 801
BstF5I	GGATG	2 cut(s)	271, 330
BstKTI	GATC	3 cut(s)	370, 723, 832
BstMAI	GTCTC	1 cut(s)	682
BstMBI	GATC	3 cut(s)	367, 720, 829
BstMWI	GCNNNNNNNGC	4 cut(s)	224, 434, 643, 797
BstNSI	RCATGY	1 cut(s)	16
BstPAI	GACNNNNGTC	1 cut(s)	245
BstSCI	CCNGG	3 cut(s)	124, 125, 711
BstSLI	GKGCMC	1 cut(s)	229
BstV1I	GCAGC	2 cut(s)	37, 446
BstX2I	RGATCY	1 cut(s)	720
BstYI	RGATCY	1 cut(s)	720
BsuRI	GGCC	3 cut(s)	218, 388, 637
BtrI	CACGTC	1 cut(s)	656
BtsCI	GGATG	2 cut(s)	271, 330
BtsIMutI	CAGTG	2 cut(s)	231, 473
BveI	ACCTGC	1 cut(s)	508
Cac8I	GCNNGC	2 cut(s)	186, 505
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	2 cut(s)	709, 765
Cfr9I	CCCGGG	1 cut(s)	125
CseI	GACGC	1 cut(s)	307
Csp6I	GTAC	5 cut(s)	16, 397, 782, 805, 864
CviAII	CATG	3 cut(s)	13, 47, 417
CviQI	GTAC	5 cut(s)	16, 397, 782, 805, 864
DdeI	CTNAG	6 cut(s)	322, 429, 523, 647, 792, 801
DpnI	GATC	3 cut(s)	369, 722, 831
DpnII	GATC	3 cut(s)	367, 720, 829
EaeI	YGGCCR	1 cut(s)	635
Eam1104I	CTCTTC	2 cut(s)	183, 531
EarI	CTCTTC	2 cut(s)	183, 531
Eco130I	CCWWGG	1 cut(s)	400
Eco47I	GGWCC	2 cut(s)	709, 765
Eco57I	CTGAAG	1 cut(s)	392
Eco88I	CYCGRG	1 cut(s)	125
EcoT14I	CCWWGG	1 cut(s)	400
EcoT22I	ATGCAT	1 cut(s)	451
ErhI	CCWWGG	1 cut(s)	400
FaeI	CATG	3 cut(s)	16, 50, 420
FalI	AAGNNNNNCTT	2 cut(s)	305, 337
FaqI	GGGAC	2 cut(s)	108, 728
FatI	CATG	3 cut(s)	12, 46, 416
FblI	GTMKAC	1 cut(s)	342
Fnu4HI	GCNGC	2 cut(s)	51, 435
FokI	GGATG	2 cut(s)	278, 317
Fsp4HI	GCNGC	2 cut(s)	51, 435
FspBI	CTAG	1 cut(s)	818
GluI	GCNGC	2 cut(s)	51, 435
GsaI	CCCAGC	1 cut(s)	694
HaeIII	GGCC	3 cut(s)	218, 388, 637
HapII	CCGG	3 cut(s)	126, 219, 712
HgaI	GACGC	1 cut(s)	307
Hin1I	GRCGYC	1 cut(s)	318
Hin1II	CATG	3 cut(s)	16, 50, 420
HincII	GTYRAC	1 cut(s)	751
HindII	GTYRAC	1 cut(s)	751
HinfI	GANTC	3 cut(s)	241, 255, 290
HpaII	CCGG	3 cut(s)	126, 219, 712
HphI	GGTGA	3 cut(s)	545, 839, 869
Hpy166II	GTNNAC	4 cut(s)	227, 343, 653, 751
Hpy188I	TCNGA	4 cut(s)	210, 372, 682, 795
Hpy188III	TCNNGA	1 cut(s)	250
Hpy8I	GTNNAC	4 cut(s)	227, 343, 653, 751
HpyAV	CCTTC	1 cut(s)	772
HpyCH4III	ACNGT	1 cut(s)	612
HpyCH4IV	ACGT	1 cut(s)	655
HpyCH4V	TGCA	6 cut(s)	53, 205, 227, 285, 449, 473
HpyF10VI	GCNNNNNNNGC	4 cut(s)	224, 434, 643, 797
HpyF3I	CTNAG	6 cut(s)	322, 429, 523, 647, 792, 801
HpySE526I	ACGT	1 cut(s)	655
Hsp92I	GRCGYC	1 cut(s)	318
Hsp92II	CATG	3 cut(s)	16, 50, 420
Kzo9I	GATC	3 cut(s)	367, 720, 829
LmnI	GCTCC	1 cut(s)	616
Lsp1109I	GCAGC	2 cut(s)	37, 446
LweI	GCATC	3 cut(s)	214, 259, 436
MaeI	CTAG	1 cut(s)	818
MaeII	ACGT	1 cut(s)	655
MaeIII	GTNAC	1 cut(s)	291
MalI	GATC	3 cut(s)	369, 722, 831
MboI	GATC	3 cut(s)	367, 720, 829
MboII	GAAGA	3 cut(s)	170, 548, 787
MflI	RGATCY	1 cut(s)	720
MhlI	GDGCHC	2 cut(s)	229, 621
MluCI	AATT	2 cut(s)	55, 118
MlyI	GAGTC	2 cut(s)	235, 299
MmeI	TCCRAC	1 cut(s)	594
Mph1103I	ATGCAT	1 cut(s)	451
MseI	TTAA	3 cut(s)	137, 312, 452
MslI	CAYNNNNRTG	1 cut(s)	210
MspI	CCGG	3 cut(s)	126, 219, 712
MspR9I	CCNGG	3 cut(s)	126, 127, 713
MwoI	GCNNNNNNNGC	4 cut(s)	224, 434, 643, 797
NciI	CCSGG	3 cut(s)	126, 127, 713
NdeII	GATC	3 cut(s)	367, 720, 829
NlaIII	CATG	3 cut(s)	16, 50, 420
NlaIV	GGNNCC	1 cut(s)	555
NmuCI	GTSAC	1 cut(s)	291
NsiI	ATGCAT	1 cut(s)	451
NspI	RCATGY	1 cut(s)	16
PciI	ACATGT	1 cut(s)	12
PfeI	GAWTC	1 cut(s)	255
PfoI	TCCNGGA	1 cut(s)	711
PkrI	GCNGC	2 cut(s)	52, 436
PleI	GAGTC	2 cut(s)	235, 298
PpsI	GAGTC	2 cut(s)	235, 298
PscI	ACATGT	1 cut(s)	12
PshAI	GACNNNNGTC	1 cut(s)	245
PspFI	CCCAGC	1 cut(s)	690
PspN4I	GGNNCC	1 cut(s)	555
PspPI	GGNCC	2 cut(s)	709, 765
PsuI	RGATCY	1 cut(s)	720
RsaI	GTAC	5 cut(s)	17, 398, 783, 806, 865
RsaNI	GTAC	5 cut(s)	16, 397, 782, 805, 864
RseI	CAYNNNNRTG	1 cut(s)	210
SaqAI	TTAA	3 cut(s)	137, 312, 452
SatI	GCNGC	2 cut(s)	51, 435
Sau3AI	GATC	3 cut(s)	367, 720, 829
Sau96I	GGNCC	2 cut(s)	709, 765
SchI	GAGTC	2 cut(s)	235, 299
ScrFI	CCNGG	3 cut(s)	126, 127, 713
SduI	GDGCHC	2 cut(s)	229, 621
SfaNI	GCATC	3 cut(s)	214, 259, 436
SinI	GGWCC	2 cut(s)	709, 765
SmaI	CCCGGG	1 cut(s)	127
SmiMI	CAYNNNNRTG	1 cut(s)	210
Sse9I	AATT	2 cut(s)	55, 118
SspMI	CTAG	1 cut(s)	818
StyD4I	CCNGG	3 cut(s)	124, 125, 711
StyI	CCWWGG	1 cut(s)	400
TaaI	ACNGT	1 cut(s)	612
TaiI	ACGT	1 cut(s)	658
TaqI	TCGA	2 cut(s)	591, 832
TasI	AATT	2 cut(s)	55, 118
TatI	WGTACW	2 cut(s)	15, 804
TfiI	GAWTC	1 cut(s)	255
Tru1I	TTAA	3 cut(s)	137, 312, 452
Tru9I	TTAA	3 cut(s)	137, 312, 452
TscAI	CASTG	2 cut(s)	238, 473
TseFI	GTSAC	1 cut(s)	291
TseI	GCWGC	2 cut(s)	50, 434
Tsp45I	GTSAC	1 cut(s)	291
TspDTI	ATGAA	3 cut(s)	131, 319, 321
TspMI	CCCGGG	1 cut(s)	125
TspRI	CASTG	2 cut(s)	238, 473
VneI	GTGCAC	1 cut(s)	225
VpaK11BI	GGWCC	2 cut(s)	709, 765
XceI	RCATGY	1 cut(s)	16
XmaI	CCCGGG	1 cut(s)	125
XmiI	GTMKAC	1 cut(s)	342
XspI	CTAG	1 cut(s)	818
Zsp2I	ATGCAT	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.