Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004989

Physical Location & Seq

Genomic Coordinates Reverse (-)

16956082 .. 16956703

Gene Structure 622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0196800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGTGTACAATACTAGAAATGAGGTACTTTCCTGGTGATATGGGAGAATGGCAGCCTAATGGAGCAATGAAAGTTATAGACAGGAAAAATGAAGTATTTAAACTGTCTCGTGGTGAATATGTTGCTGTGGAAAGCGTTGAAAGCAAATACTTGCAATGTCCCCTTGTCACATCGATATGGGTTTATGGGAACGGCTTTGAGTCATTTCTTGTTGCTGTGGTTGTTCCTGGCAGAAAGGCCTTGGAGGACTGGGCAGCTGAGCATCATTTGACTGATGATTACAAATCATTGTGTCAAAACCTGAGCAAGAAGGAACATGATGAGGTGGACTCTAATCTCTTCTCTCGACTCCAATCTTGCTTTTATTGGGAGGAATTTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006865 GO:0006950 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009266 GO:0009409 GO:0009628 GO:0012505 GO:0015075 GO:0015171 GO:0015318 GO:0015672 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:1902600 GO:1903825 GO:1905039 GO:1990542 GO:1990845

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

127

Amino Acids

14.74

Weight (kDa)

4.91

Isoelectric Point (pI)

27.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17960 AT1G17960
malus_domestica	MD15G1401700.v1.1 MD15G1402000.v1.1
rosa_chinensis	RchiOBHm_Chr4g0444231
rosa_laevigata	RLG00000005339 RLG00000005847 RLG00000008520 RLG00000020302
rosa_multiflora	Rmu_sc0000016.1_g000006 Rmu_sc0000987.1_g000022 Rmu_sc0014698.1_g000003
rosa_roxburghii	Rroxscaffold_3G00219500 Rroxscaffold_5G00384800
rosa_rugosa	Rorug03G0334500 Rorug07G0196800
rosa_samantha	Rh1BG152700 Rh1CG027000 Rh1DG185100 Rh2BG464200 Rh4AG158400 Rh4BG163900 Rh4CG184100 Rh4DG152900 Rh4DG153000 Rh5CG279500 Rh6BG190300 Rh7CG027100 Rh7DG026600 Rh7DG335900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	374
AfaI	GTAC	2 cut(s)	7, 26
AgsI	TTSAA	1 cut(s)	140
AjnI	CCWGG	2 cut(s)	31, 226
AluBI	AGCT	1 cut(s)	257
AluI	AGCT	1 cut(s)	257
Alw26I	GTCTC	1 cut(s)	111
AoxI	GGCC	1 cut(s)	237
ApeKI	GCWGC	2 cut(s)	52, 254
ApoI	RAATTY	1 cut(s)	374
AsuHPI	GGTGA	2 cut(s)	47, 125
BauI	CACGAG	1 cut(s)	108
BbvI	GCAGC	2 cut(s)	64, 266
BceAI	ACGGC	1 cut(s)	208
BciT130I	CCWGG	2 cut(s)	33, 228
BcoDI	GTCTC	1 cut(s)	111
BfaI	CTAG	1 cut(s)	14
BisI	GCNGC	2 cut(s)	53, 255
BlpI	GCTNAGC	1 cut(s)	258
BlsI	GCNGC	2 cut(s)	54, 256
Bme1390I	CCNGG	2 cut(s)	33, 228
BmrFI	CCNGG	2 cut(s)	33, 228
BmrI	ACTGGG	1 cut(s)	259
BmsI	GCATC	1 cut(s)	271
BmuI	ACTGGG	1 cut(s)	259
BplI	GAGNNNNNCTC	2 cut(s)	314, 346
Bpu10I	CCTNAGC	1 cut(s)	302
Bpu1102I	GCTNAGC	1 cut(s)	258
Bsa29I	ATCGAT	1 cut(s)	173
BsaJI	CCNNGG	1 cut(s)	240
Bse1I	ACTGG	1 cut(s)	254
Bse3DI	GCAATG	2 cut(s)	72, 161
BseBI	CCWGG	2 cut(s)	33, 228
BseCI	ATCGAT	1 cut(s)	173
BseDI	CCNNGG	1 cut(s)	240
BseMI	GCAATG	2 cut(s)	72, 161
BseMII	CTCAG	2 cut(s)	249, 293
BseNI	ACTGG	1 cut(s)	254
BseXI	GCAGC	2 cut(s)	64, 266
BshFI	GGCC	1 cut(s)	239
BshVI	ATCGAT	1 cut(s)	173
BslFI	GGGAC	1 cut(s)	144
BsmAI	GTCTC	1 cut(s)	111
BsmFI	GGGAC	1 cut(s)	144
BsnI	GGCC	1 cut(s)	239
Bsp1407I	TGTACA	1 cut(s)	5
Bsp1720I	GCTNAGC	1 cut(s)	258
BspANI	GGCC	1 cut(s)	239
BspCNI	CTCAG	2 cut(s)	250, 294
BspDI	ATCGAT	1 cut(s)	173
BsrDI	GCAATG	2 cut(s)	72, 161
BsrGI	TGTACA	1 cut(s)	5
BsrI	ACTGG	1 cut(s)	254
BssECI	CCNNGG	1 cut(s)	240
BssSI	CACGAG	1 cut(s)	108
BssT1I	CCWWGG	1 cut(s)	240
Bst2BI	CACGAG	1 cut(s)	108
Bst2UI	CCWGG	2 cut(s)	33, 228
Bst4CI	ACNGT	1 cut(s)	105
Bst6I	CTCTTC	1 cut(s)	344
BstAUI	TGTACA	1 cut(s)	5
BstDEI	CTNAG	3 cut(s)	258, 302, 381
BstMAI	GTCTC	1 cut(s)	111
BstMWI	GCNNNNNNNGC	1 cut(s)	141
BstNI	CCWGG	2 cut(s)	33, 228
BstSCI	CCNGG	2 cut(s)	31, 226
BstV1I	GCAGC	2 cut(s)	64, 266
Bsu15I	ATCGAT	1 cut(s)	173
BsuRI	GGCC	1 cut(s)	239
BsuTUI	ATCGAT	1 cut(s)	173
ClaI	ATCGAT	1 cut(s)	173
Csp6I	GTAC	2 cut(s)	6, 25
CviAII	CATG	1 cut(s)	317
CviJI	RGCY	4 cut(s)	55, 195, 239, 257
CviKI_1	RGCY	4 cut(s)	55, 195, 239, 257
CviQI	GTAC	2 cut(s)	6, 25
DdeI	CTNAG	3 cut(s)	258, 302, 381
DraI	TTTAAA	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	344
EarI	CTCTTC	1 cut(s)	344
Eco130I	CCWWGG	1 cut(s)	240
Eco147I	AGGCCT	1 cut(s)	239
EcoRII	CCWGG	2 cut(s)	31, 226
EcoT14I	CCWWGG	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	240
FaeI	CATG	1 cut(s)	320
FaiI	YATR	6 cut(s)	41, 77, 120, 178, 186, 318
FaqI	GGGAC	1 cut(s)	144
FatI	CATG	1 cut(s)	316
Fnu4HI	GCNGC	2 cut(s)	53, 255
Fsp4HI	GCNGC	2 cut(s)	53, 255
FspBI	CTAG	1 cut(s)	14
GluI	GCNGC	2 cut(s)	53, 255
HaeIII	GGCC	1 cut(s)	239
Hin1II	CATG	1 cut(s)	320
HinfI	GANTC	3 cut(s)	200, 329, 348
HphI	GGTGA	2 cut(s)	47, 125
Hpy166II	GTNNAC	2 cut(s)	6, 328
Hpy188III	TCNNGA	1 cut(s)	345
Hpy8I	GTNNAC	2 cut(s)	6, 328
HpyAV	CCTTC	1 cut(s)	304
HpyCH4III	ACNGT	1 cut(s)	105
HpyCH4V	TGCA	1 cut(s)	154
HpyF10VI	GCNNNNNNNGC	1 cut(s)	141
HpyF3I	CTNAG	3 cut(s)	258, 302, 381
Hsp92II	CATG	1 cut(s)	320
LmnI	GCTCC	1 cut(s)	62
LpnPI	CCDG	7 cut(s)	18, 45, 67, 213, 235, 240, 314
Lsp1109I	GCAGC	2 cut(s)	64, 266
LweI	GCATC	1 cut(s)	271
MaeI	CTAG	1 cut(s)	14
MaeIII	GTNAC	1 cut(s)	166
MboII	GAAGA	1 cut(s)	331
MluCI	AATT	1 cut(s)	374
MlyI	GAGTC	3 cut(s)	209, 323, 342
MnlI	CCTC	4 cut(s)	15, 238, 316, 364
MseI	TTAA	1 cut(s)	99
MslI	CAYNNNNRTG	1 cut(s)	175
MspA1I	CMGCKG	1 cut(s)	257
MspR9I	CCNGG	2 cut(s)	33, 228
MvaI	CCWGG	2 cut(s)	33, 228
MwoI	GCNNNNNNNGC	1 cut(s)	141
NlaIII	CATG	1 cut(s)	320
NmuCI	GTSAC	1 cut(s)	166
PceI	AGGCCT	1 cut(s)	239
PkrI	GCNGC	2 cut(s)	54, 256
PleI	GAGTC	3 cut(s)	208, 323, 342
PpsI	GAGTC	3 cut(s)	208, 323, 342
Psp6I	CCWGG	2 cut(s)	31, 226
PspGI	CCWGG	2 cut(s)	31, 226
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	2 cut(s)	7, 26
RsaNI	GTAC	2 cut(s)	6, 25
RseI	CAYNNNNRTG	1 cut(s)	175
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	2 cut(s)	53, 255
SchI	GAGTC	3 cut(s)	209, 323, 342
ScrFI	CCNGG	2 cut(s)	33, 228
SetI	ASST	4 cut(s)	26, 259, 303, 327
SfaNI	GCATC	1 cut(s)	271
SmiMI	CAYNNNNRTG	1 cut(s)	175
Sse9I	AATT	1 cut(s)	374
SseBI	AGGCCT	1 cut(s)	239
SspMI	CTAG	1 cut(s)	14
StuI	AGGCCT	1 cut(s)	239
StyD4I	CCNGG	2 cut(s)	31, 226
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	1 cut(s)	105
TaqI	TCGA	2 cut(s)	173, 346
TasI	AATT	1 cut(s)	374
TatI	WGTACW	1 cut(s)	5
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	2 cut(s)	52, 254
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	2 cut(s)	83, 105
XapI	RAATTY	1 cut(s)	374
XspI	CTAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.