Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0004989

Physical Location & Seq

Genomic Coordinates Reverse (-)

25116792 .. 25119199

Gene Structure 2408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG152700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGTAAATGAAGGGGATGGTGCATTTTACAGACCAAAGATAGATACCAATGTATCTGATGCATTGAACATGAAGTTTCAGTGTGCAACATTACAGCTTGATTTTCAGCTACCTGCTCGCTTTGAGCTATATTACTCAGCAGAGGGTGAAGAAGGCAAGAAGGAGGCACCTGCTATGATACACATAGCCATTTTCGGTTCTGTTGAGCGTTCTCTAGCAATAACAGTGGCAAATCCAACTGATCTTGTAAAAGTTAGACTTCGAGCTGAGAGAAAATTGCCACTAGGCGCACCAAGGCGCTATTCTGGCACATTAAATGCGTCTTCCACCATCTTGAGACAGGAAGGAGTTGGGGTTCTCTGGACTGGAATTGGACCTAACATTGCACACACTTCTGAAAATTCTCGGGTTAAAGGCAATGTTGTCACTCATCTTTTTGCTGGTCTGGGGGGTTATTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004829 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006435 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0030312 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071944 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon TGS tRNA-synt_2b tRNA_SAD

Protein Analysis

153

Amino Acids

16.64

Weight (kDa)

8.76

Isoelectric Point (pI)

35.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_2b	PF00587	7 - 78	1.5e-09	tRNA synthetase class II core domain (G, H, P, S and T)
Mito_carr	PF00153	62 - 132	1.1e-10	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17960 AT1G17960
malus_domestica	MD15G1401700.v1.1 MD15G1402000.v1.1
rosa_chinensis	RchiOBHm_Chr4g0444231
rosa_laevigata	RLG00000005339 RLG00000005847 RLG00000008520 RLG00000020302
rosa_multiflora	Rmu_sc0000016.1_g000006 Rmu_sc0000987.1_g000022 Rmu_sc0014698.1_g000003
rosa_roxburghii	Rroxscaffold_3G00219500 Rroxscaffold_5G00384800
rosa_rugosa	Rorug03G0334500 Rorug07G0196800
rosa_samantha	Rh1BG152700 Rh1CG027000 Rh1DG185100 Rh2BG464200 Rh4AG158400 Rh4BG163900 Rh4CG184100 Rh4DG152900 Rh4DG153000 Rh5CG279500 Rh6BG190300 Rh7CG027100 Rh7DG026600 Rh7DG335900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	178
Acc36I	ACCTGC	2 cut(s)	121, 178
AccB1I	GGYRCC	1 cut(s)	166
AcsI	RAATTY	1 cut(s)	400
AgsI	TTSAA	1 cut(s)	67
AjuI	GAANNNNNNNTTGG	2 cut(s)	286, 318
AloI	GAACNNNNNNTCC	2 cut(s)	339, 371
AluBI	AGCT	4 cut(s)	97, 109, 127, 266
AluI	AGCT	4 cut(s)	97, 109, 127, 266
Alw26I	GTCTC	1 cut(s)	331
Ama87I	CYCGRG	1 cut(s)	405
ApoI	RAATTY	1 cut(s)	400
AspLEI	GCGC	2 cut(s)	290, 300
AspS9I	GGNCC	1 cut(s)	374
AsuHPI	GGTGA	1 cut(s)	158
AvaI	CYCGRG	1 cut(s)	405
AvaII	GGWCC	1 cut(s)	374
BaeI	ACNNNNGTAYC	4 cut(s)	36, 36, 69, 69
BanI	GGYRCC	1 cut(s)	166
BbsI	GAAGAC	1 cut(s)	315
BccI	CCATC	2 cut(s)	11, 338
BcoDI	GTCTC	1 cut(s)	331
BfaI	CTAG	2 cut(s)	215, 284
BfoI	RGCGCY	1 cut(s)	301
BfuAI	ACCTGC	2 cut(s)	121, 178
Bme18I	GGWCC	1 cut(s)	374
BmeT110I	CYCGRG	1 cut(s)	405
BmgT120I	GGNCC	1 cut(s)	374
BmiI	GGNNCC	1 cut(s)	168
BmsI	GCATC	1 cut(s)	49
BpiI	GAAGAC	1 cut(s)	315
BpuEI	CTTGAG	1 cut(s)	355
BsaJI	CCNNGG	1 cut(s)	293
BsaXI	ACNNNNNCTCC	2 cut(s)	339, 369
Bse1I	ACTGG	1 cut(s)	370
Bse3DI	GCAATG	2 cut(s)	381, 424
BseDI	CCNNGG	1 cut(s)	293
BseGI	GGATG	1 cut(s)	22
BseMI	GCAATG	2 cut(s)	381, 424
BseMII	CTCAG	2 cut(s)	150, 258
BseNI	ACTGG	1 cut(s)	370
BshNI	GGYRCC	1 cut(s)	166
BsiHKCI	CYCGRG	1 cut(s)	405
BsmAI	GTCTC	1 cut(s)	331
BsoBI	CYCGRG	1 cut(s)	405
Bsp143I	GATC	1 cut(s)	241
BspCNI	CTCAG	2 cut(s)	149, 259
BspLI	GGNNCC	1 cut(s)	168
BspMI	ACCTGC	2 cut(s)	121, 178
BspT107I	GGYRCC	1 cut(s)	166
BsrDI	GCAATG	2 cut(s)	381, 424
BsrI	ACTGG	1 cut(s)	370
BssECI	CCNNGG	1 cut(s)	293
BssMI	GATC	1 cut(s)	241
BssT1I	CCWWGG	1 cut(s)	293
Bst4CI	ACNGT	1 cut(s)	226
BstC8I	GCNNGC	1 cut(s)	118
BstDEI	CTNAG	2 cut(s)	136, 267
BstF5I	GGATG	1 cut(s)	22
BstH2I	RGCGCY	1 cut(s)	301
BstHHI	GCGC	2 cut(s)	290, 300
BstKTI	GATC	1 cut(s)	244
BstMAI	GTCTC	1 cut(s)	331
BstMBI	GATC	1 cut(s)	241
BstMWI	GCNNNNNNNGC	1 cut(s)	306
BstV2I	GAAGAC	1 cut(s)	315
BtsCI	GGATG	1 cut(s)	22
BtsIMutI	CAGTG	2 cut(s)	86, 231
BveI	ACCTGC	2 cut(s)	121, 178
Cac8I	GCNNGC	1 cut(s)	118
CfoI	GCGC	2 cut(s)	290, 300
Cfr13I	GGNCC	1 cut(s)	374
CseI	GACGC	1 cut(s)	309
CspCI	CAANNNNNGTGG	2 cut(s)	207, 242
CviAII	CATG	1 cut(s)	70
CviJI	RGCY	5 cut(s)	97, 109, 127, 188, 266
CviKI_1	RGCY	5 cut(s)	97, 109, 127, 188, 266
DdeI	CTNAG	2 cut(s)	136, 267
DpnI	GATC	1 cut(s)	243
DpnII	GATC	1 cut(s)	241
Eco130I	CCWWGG	1 cut(s)	293
Eco47I	GGWCC	1 cut(s)	374
Eco88I	CYCGRG	1 cut(s)	405
EcoT14I	CCWWGG	1 cut(s)	293
EcoT22I	ATGCAT	1 cut(s)	64
ErhI	CCWWGG	1 cut(s)	293
FaeI	CATG	1 cut(s)	73
FaiI	YATR	4 cut(s)	71, 130, 176, 185
FalI	AAGNNNNNCTT	2 cut(s)	243, 275
FatI	CATG	1 cut(s)	69
FokI	GGATG	1 cut(s)	29
FspBI	CTAG	2 cut(s)	215, 284
GlaI	GCGC	2 cut(s)	289, 299
HaeII	RGCGCY	1 cut(s)	301
HgaI	GACGC	1 cut(s)	309
HhaI	GCGC	2 cut(s)	290, 300
Hin1II	CATG	1 cut(s)	73
Hin6I	GCGC	2 cut(s)	288, 298
HinP1I	GCGC	2 cut(s)	288, 298
HphI	GGTGA	1 cut(s)	158
Hpy188I	TCNGA	2 cut(s)	58, 397
Hpy188III	TCNNGA	2 cut(s)	334, 361
HpyAV	CCTTC	4 cut(s)	5, 146, 154, 338
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4V	TGCA	4 cut(s)	23, 62, 86, 386
HpyF10VI	GCNNNNNNNGC	1 cut(s)	306
HpyF3I	CTNAG	2 cut(s)	136, 267
Hsp92II	CATG	1 cut(s)	73
HspAI	GCGC	2 cut(s)	288, 298
Kzo9I	GATC	1 cut(s)	241
LpnPI	CCDG	8 cut(s)	126, 183, 291, 326, 346, 351, 426, 431
LweI	GCATC	1 cut(s)	49
MaeI	CTAG	2 cut(s)	215, 284
MaeIII	GTNAC	1 cut(s)	424
MalI	GATC	1 cut(s)	243
MboI	GATC	1 cut(s)	241
MboII	GAAGA	2 cut(s)	161, 315
MluCI	AATT	3 cut(s)	275, 369, 400
MmeI	TCCRAC	1 cut(s)	260
MnlI	CCTC	2 cut(s)	136, 157
Mph1103I	ATGCAT	1 cut(s)	64
MseI	TTAA	2 cut(s)	314, 411
MwoI	GCNNNNNNNGC	1 cut(s)	306
NdeII	GATC	1 cut(s)	241
NlaIII	CATG	1 cut(s)	73
NlaIV	GGNNCC	1 cut(s)	168
NmuCI	GTSAC	1 cut(s)	424
NsiI	ATGCAT	1 cut(s)	64
PaqCI	CACCTGC	1 cut(s)	178
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	1 cut(s)	374
SaqAI	TTAA	2 cut(s)	314, 411
Sau3AI	GATC	1 cut(s)	241
Sau96I	GGNCC	1 cut(s)	374
SetI	ASST	7 cut(s)	99, 111, 115, 129, 172, 268, 379
SfaNI	GCATC	1 cut(s)	49
SinI	GGWCC	1 cut(s)	374
SmlI	CTYRAG	1 cut(s)	334
SmoI	CTYRAG	1 cut(s)	334
Sse9I	AATT	3 cut(s)	275, 369, 400
SspMI	CTAG	2 cut(s)	215, 284
StyI	CCWWGG	1 cut(s)	293
TaaI	ACNGT	1 cut(s)	226
TaqI	TCGA	1 cut(s)	262
TasI	AATT	3 cut(s)	275, 369, 400
Tru1I	TTAA	2 cut(s)	314, 411
Tru9I	TTAA	2 cut(s)	314, 411
TscAI	CASTG	2 cut(s)	86, 231
TseFI	GTSAC	1 cut(s)	424
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	2 cut(s)	24, 86
TspRI	CASTG	2 cut(s)	86, 231
VpaK11BI	GGWCC	1 cut(s)	374
XapI	RAATTY	1 cut(s)	400
XspI	CTAG	2 cut(s)	215, 284
Zsp2I	ATGCAT	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.