Rh4CG184100

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0004989
Physical Location & Seq
Reverse (-)
39723653 .. 39724312
660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG184100.1

Sequence Viewer

Length: 318 bp
ATGGATTTACCCCTCCCTCATTTGCAAGATGGAAAGATAGGTGGTGTTCTAGCAATCACAGTGGCAAATCCAACTGATCTTGTAAAAGTTAGACTTCAAGCTGAGAGAAAACTACCACCAGGCACACCAAGGCGCTATTCTGGCGCACTAAATGCGTATTCCACCATTTTGAGACAGGAGGGAGTTGGGGATCTCTGGATTGGAATTGGACCTAACATTGCCCGTAATGCTATCATTAATGATGCTGAACTAGCCAGTTATGATCAAGTGAAGCAGGTTTCTTTGCCGTCTGCATTGGCTCTCCAGTTCATGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

105

Amino Acids

11.39

Weight (kDa)

8.09

Isoelectric Point (pI)

47.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 11 - 93 6.3e-18 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 265
AclWI GGATC 1 cut(s) 198
AgsI TTSAA 1 cut(s) 98
AjnI CCWGG 1 cut(s) 118
AjuI GAANNNNNNNTTGG 2 cut(s) 121, 153
AluBI AGCT 1 cut(s) 101
AluI AGCT 1 cut(s) 101
Alw26I GTCTC 1 cut(s) 166
AlwI GGATC 1 cut(s) 198
AseI ATTAAT 1 cut(s) 237
AspLEI GCGC 2 cut(s) 135, 146
AspS9I GGNCC 1 cut(s) 209
AvaII GGWCC 1 cut(s) 209
BccI CCATC 1 cut(s) 23
BceAI ACGGC 1 cut(s) 271
BciT130I CCWGG 1 cut(s) 120
BclI TGATCA 1 cut(s) 262
BcoDI GTCTC 1 cut(s) 166
BfaI CTAG 2 cut(s) 50, 251
BfoI RGCGCY 1 cut(s) 136
BfuAI ACCTGC 1 cut(s) 265
Bme1390I CCNGG 1 cut(s) 120
Bme18I GGWCC 1 cut(s) 209
BmgT120I GGNCC 1 cut(s) 209
BmrFI CCNGG 1 cut(s) 120
BmsI GCATC 1 cut(s) 232
BpmI CTGGAG 1 cut(s) 287
BsaJI CCNNGG 1 cut(s) 128
Bse1I ACTGG 2 cut(s) 255, 304
Bse3DI GCAATG 1 cut(s) 216
BseBI CCWGG 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 128
BseMI GCAATG 1 cut(s) 216
BseMII CTCAG 1 cut(s) 93
BseNI ACTGG 2 cut(s) 255, 304
BsmAI GTCTC 1 cut(s) 166
Bsp143I GATC 3 cut(s) 76, 190, 262
BspCNI CTCAG 1 cut(s) 94
BspMI ACCTGC 1 cut(s) 265
BspPI GGATC 1 cut(s) 198
BsrDI GCAATG 1 cut(s) 216
BsrI ACTGG 2 cut(s) 255, 304
BssECI CCNNGG 1 cut(s) 128
BssMI GATC 3 cut(s) 76, 190, 262
BssT1I CCWWGG 1 cut(s) 128
Bst2UI CCWGG 1 cut(s) 120
Bst4CI ACNGT 1 cut(s) 61
BstAPI GCANNNNNTGC 1 cut(s) 152
BstDEI CTNAG 1 cut(s) 102
BstH2I RGCGCY 1 cut(s) 136
BstHHI GCGC 2 cut(s) 135, 146
BstKTI GATC 3 cut(s) 79, 193, 265
BstMAI GTCTC 1 cut(s) 166
BstMBI GATC 3 cut(s) 76, 190, 262
BstMWI GCNNNNNNNGC 4 cut(s) 141, 152, 227, 251
BstNI CCWGG 1 cut(s) 120
BstSCI CCNGG 1 cut(s) 118
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
BtsIMutI CAGTG 1 cut(s) 66
BveI ACCTGC 1 cut(s) 265
CfoI GCGC 2 cut(s) 135, 146
Cfr13I GGNCC 1 cut(s) 209
CspCI CAANNNNNGTGG 2 cut(s) 42, 77
CviAII CATG 1 cut(s) 310
CviJI RGCY 3 cut(s) 101, 254, 299
CviKI_1 RGCY 3 cut(s) 101, 254, 299
DdeI CTNAG 1 cut(s) 102
DpnI GATC 3 cut(s) 78, 192, 264
DpnII GATC 3 cut(s) 76, 190, 262
Eco130I CCWWGG 1 cut(s) 128
Eco47I GGWCC 1 cut(s) 209
EcoRII CCWGG 1 cut(s) 118
EcoT14I CCWWGG 1 cut(s) 128
ErhI CCWWGG 1 cut(s) 128
FaeI CATG 1 cut(s) 313
FaiI YATR 2 cut(s) 261, 311
FalI AAGNNNNNCTT 2 cut(s) 78, 110
FatI CATG 1 cut(s) 309
FbaI TGATCA 1 cut(s) 262
FspBI CTAG 2 cut(s) 50, 251
GlaI GCGC 2 cut(s) 134, 145
GsuI CTGGAG 1 cut(s) 287
HaeII RGCGCY 1 cut(s) 136
HhaI GCGC 2 cut(s) 135, 146
Hin1II CATG 1 cut(s) 313
Hin6I GCGC 2 cut(s) 133, 144
HinP1I GCGC 2 cut(s) 133, 144
Hpy188III TCNNGA 1 cut(s) 196
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4V TGCA 2 cut(s) 25, 293
HpyF10VI GCNNNNNNNGC 4 cut(s) 141, 152, 227, 251
HpyF3I CTNAG 1 cut(s) 102
Hsp92II CATG 1 cut(s) 313
HspAI GCGC 2 cut(s) 133, 144
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 3 cut(s) 76, 190, 262
LpnPI CCDG 7 cut(s) 105, 126, 132, 161, 181, 260, 268
LweI GCATC 1 cut(s) 232
MaeI CTAG 2 cut(s) 50, 251
MalI GATC 3 cut(s) 78, 192, 264
MboI GATC 3 cut(s) 76, 190, 262
MflI RGATCY 1 cut(s) 190
MluCI AATT 1 cut(s) 204
MmeI TCCRAC 1 cut(s) 95
MnlI CCTC 3 cut(s) 23, 27, 172
MseI TTAA 1 cut(s) 237
MspR9I CCNGG 1 cut(s) 120
MvaI CCWGG 1 cut(s) 120
MwoI GCNNNNNNNGC 4 cut(s) 141, 152, 227, 251
NdeII GATC 3 cut(s) 76, 190, 262
NlaIII CATG 1 cut(s) 313
PshBI ATTAAT 1 cut(s) 237
Psp6I CCWGG 1 cut(s) 118
PspGI CCWGG 1 cut(s) 118
PspPI GGNCC 1 cut(s) 209
PsuI RGATCY 1 cut(s) 190
SaqAI TTAA 1 cut(s) 237
Sau3AI GATC 3 cut(s) 76, 190, 262
Sau96I GGNCC 1 cut(s) 209
ScrFI CCNGG 1 cut(s) 120
SetI ASST 4 cut(s) 43, 103, 214, 279
SfaNI GCATC 1 cut(s) 232
SinI GGWCC 1 cut(s) 209
Sse9I AATT 1 cut(s) 204
SspMI CTAG 2 cut(s) 50, 251
StyD4I CCNGG 1 cut(s) 118
StyI CCWWGG 1 cut(s) 128
TaaI ACNGT 1 cut(s) 61
TasI AATT 1 cut(s) 204
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TscAI CASTG 1 cut(s) 66
TspDTI ATGAA 1 cut(s) 298
TspRI CASTG 1 cut(s) 66
VpaK11BI GGWCC 1 cut(s) 209
VspI ATTAAT 1 cut(s) 237
XspI CTAG 2 cut(s) 50, 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.