Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0004989

Physical Location & Seq

Genomic Coordinates Reverse (-)

1959557 .. 1960177

Gene Structure 621 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG027100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGAATTGTCCCGGGCATTGTTTAATGTTTCAGCACAGAGTTCGTTCTTGTAGAGAGCTTCCTCTTCGACTGGCTGACTTTGGGGTTTTGCATCGGAATGAGGCCAGTGGTGCACTCACTGGATTAACTCGTGTCAGGAGATTCCAGCAGGATGATGCTCATATCTTTTGCAGGGAGTCACAAATAAAAGATGAAGTTAAGGGCGTCTTAGACTTCATCCAGTATGTCTACGATATATGTGGCTTCACTTTTGATCTGAAGCTATCAACAAGGCCAGAAAAGTACCTTGGAGAGATAGAAACATGGGAGAAAGCTGAGGCAGCTCTTACAGATGCATTAAATGAGTTTGGCAAACCCTGGCAGATAAATAAAGGGGATGGTGCATTTTATGGACCAAAGATAGATATTAGTGTATCTGATGCATTAAACAGGAAGTTTCAGTGTGCAACATTTCAGCTTGATTTTCAGCTACCTGCTCGCTTTGAGCTGTATTACTCAGCAGAGGGTGAAGAAGGCAAGAGGGAGGCACCTGTTATGATACACAGCCATTTTGGGTTCTGTCGAGCGTATGTTTGCTATACTATTGGAGCACTACAAGGGGAAATGGCCGTTCTGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004829 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006435 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0030312 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071944 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon TGS tRNA-synt_2b tRNA_SAD

Protein Analysis

206

Amino Acids

23.49

Weight (kDa)

5.88

Isoelectric Point (pI)

35.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_2b	PF00587	1 - 192	3.8e-37	tRNA synthetase class II core domain (G, H, P, S and T)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17960 AT1G17960
malus_domestica	MD15G1401700.v1.1 MD15G1402000.v1.1
rosa_chinensis	RchiOBHm_Chr4g0444231
rosa_laevigata	RLG00000005339 RLG00000005847 RLG00000008520 RLG00000020302
rosa_multiflora	Rmu_sc0000016.1_g000006 Rmu_sc0000987.1_g000022 Rmu_sc0014698.1_g000003
rosa_roxburghii	Rroxscaffold_3G00219500 Rroxscaffold_5G00384800
rosa_rugosa	Rorug03G0334500 Rorug07G0196800
rosa_samantha	Rh1BG152700 Rh1CG027000 Rh1DG185100 Rh2BG464200 Rh4AG158400 Rh4BG163900 Rh4CG184100 Rh4DG152900 Rh4DG153000 Rh5CG279500 Rh6BG190300 Rh7CG027100 Rh7DG026600 Rh7DG335900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	481
AccB1I	GGYRCC	1 cut(s)	526
AccI	GTMKAC	1 cut(s)	228
AcoI	YGGCCR	1 cut(s)	606
AcuI	CTGAAG	1 cut(s)	278
AcyI	GRCGYC	1 cut(s)	204
AfaI	GTAC	1 cut(s)	284
AjnI	CCWGG	1 cut(s)	356
AjuI	GAANNNNNNNTTGG	2 cut(s)	270, 302
AluBI	AGCT	7 cut(s)	58, 262, 314, 323, 457, 469, 487
AluI	AGCT	7 cut(s)	58, 262, 314, 323, 457, 469, 487
Alw21I	GWGCWC	2 cut(s)	115, 592
Alw44I	GTGCAC	1 cut(s)	111
Ama87I	CYCGRG	1 cut(s)	11
AoxI	GGCC	3 cut(s)	102, 272, 606
ApaLI	GTGCAC	1 cut(s)	111
ApeKI	GCWGC	1 cut(s)	320
AspS9I	GGNCC	1 cut(s)	392
AsuC2I	CCSGG	2 cut(s)	12, 13
AsuHPI	GGTGA	1 cut(s)	518
AvaI	CYCGRG	1 cut(s)	11
AvaII	GGWCC	1 cut(s)	392
BaeGI	GKGCMC	1 cut(s)	115
BanI	GGYRCC	1 cut(s)	526
BauI	CACGAG	1 cut(s)	129
Bbv12I	GWGCWC	2 cut(s)	115, 592
BbvCI	CCTCAGC	1 cut(s)	315
BbvI	GCAGC	1 cut(s)	332
BccI	CCATC	1 cut(s)	371
BceAI	ACGGC	1 cut(s)	593
BcgI	CGANNNNNNTGC	2 cut(s)	23, 57
BciT130I	CCWGG	1 cut(s)	358
BcnI	CCSGG	2 cut(s)	12, 13
BfuAI	ACCTGC	1 cut(s)	481
BglI	GCCNNNNNGGC	1 cut(s)	614
BisI	GCNGC	1 cut(s)	321
BlsI	GCNGC	1 cut(s)	322
Bme1390I	CCNGG	3 cut(s)	12, 13, 358
Bme18I	GGWCC	1 cut(s)	392
BmeT110I	CYCGRG	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	392
BmiI	GGNNCC	1 cut(s)	528
BmrFI	CCNGG	3 cut(s)	12, 13, 358
BmsI	GCATC	4 cut(s)	100, 145, 322, 409
Bpu10I	CCTNAGC	1 cut(s)	315
BpuMI	CCSGG	2 cut(s)	12, 13
BsaHI	GRCGYC	1 cut(s)	204
BsaJI	CCNNGG	3 cut(s)	11, 286, 356
Bse1I	ACTGG	4 cut(s)	75, 105, 124, 220
BseBI	CCWGG	1 cut(s)	358
BseDI	CCNNGG	3 cut(s)	11, 286, 356
BseGI	GGATG	3 cut(s)	157, 216, 382
BseMII	CTCAG	2 cut(s)	306, 510
BseNI	ACTGG	4 cut(s)	75, 105, 124, 220
BseSI	GKGCMC	1 cut(s)	115
BseXI	GCAGC	1 cut(s)	332
BshFI	GGCC	3 cut(s)	104, 274, 608
BshNI	GGYRCC	1 cut(s)	526
BsiHKAI	GWGCWC	2 cut(s)	115, 592
BsiHKCI	CYCGRG	1 cut(s)	11
BsiSI	CCGG	1 cut(s)	12
BsnI	GGCC	3 cut(s)	104, 274, 608
BsoBI	CYCGRG	1 cut(s)	11
Bsp1286I	GDGCHC	2 cut(s)	115, 592
Bsp143I	GATC	1 cut(s)	253
BspANI	GGCC	3 cut(s)	104, 274, 608
BspCNI	CTCAG	2 cut(s)	307, 509
BspLI	GGNNCC	1 cut(s)	528
BspMI	ACCTGC	1 cut(s)	481
BspT107I	GGYRCC	1 cut(s)	526
BsrI	ACTGG	4 cut(s)	75, 105, 124, 220
BssECI	CCNNGG	3 cut(s)	11, 286, 356
BssMI	GATC	1 cut(s)	253
BssNI	GRCGYC	1 cut(s)	204
BssSI	CACGAG	1 cut(s)	129
BssT1I	CCWWGG	1 cut(s)	286
Bst2BI	CACGAG	1 cut(s)	129
Bst2UI	CCWGG	1 cut(s)	358
Bst6I	CTCTTC	1 cut(s)	69
BstACI	GRCGYC	1 cut(s)	204
BstC8I	GCNNGC	1 cut(s)	478
BstDEI	CTNAG	4 cut(s)	208, 315, 496, 618
BstF5I	GGATG	3 cut(s)	157, 216, 382
BstKTI	GATC	1 cut(s)	256
BstMBI	GATC	1 cut(s)	253
BstMWI	GCNNNNNNNGC	3 cut(s)	110, 320, 614
BstNI	CCWGG	1 cut(s)	358
BstSCI	CCNGG	3 cut(s)	10, 11, 356
BstSLI	GKGCMC	1 cut(s)	115
BstV1I	GCAGC	1 cut(s)	332
BsuRI	GGCC	3 cut(s)	104, 274, 608
BtsCI	GGATG	3 cut(s)	157, 216, 382
BtsIMutI	CAGTG	3 cut(s)	112, 117, 446
BveI	ACCTGC	1 cut(s)	481
Cac8I	GCNNGC	1 cut(s)	478
Cfr13I	GGNCC	1 cut(s)	392
Cfr9I	CCCGGG	1 cut(s)	11
CseI	GACGC	1 cut(s)	193
Csp6I	GTAC	1 cut(s)	283
CviAII	CATG	1 cut(s)	303
CviQI	GTAC	1 cut(s)	283
DdeI	CTNAG	4 cut(s)	208, 315, 496, 618
DpnI	GATC	1 cut(s)	255
DpnII	GATC	1 cut(s)	253
EaeI	YGGCCR	1 cut(s)	606
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Eco130I	CCWWGG	1 cut(s)	286
Eco47I	GGWCC	1 cut(s)	392
Eco57I	CTGAAG	1 cut(s)	278
Eco88I	CYCGRG	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	356
EcoT14I	CCWWGG	1 cut(s)	286
EcoT22I	ATGCAT	2 cut(s)	337, 424
ErhI	CCWWGG	1 cut(s)	286
FaeI	CATG	1 cut(s)	306
FaiI	YATR	9 cut(s)	162, 225, 236, 238, 304, 390, 536, 570, 579
FalI	AAGNNNNNCTT	2 cut(s)	191, 223
FatI	CATG	1 cut(s)	302
FblI	GTMKAC	1 cut(s)	228
Fnu4HI	GCNGC	1 cut(s)	321
FokI	GGATG	3 cut(s)	164, 203, 389
Fsp4HI	GCNGC	1 cut(s)	321
GluI	GCNGC	1 cut(s)	321
HaeIII	GGCC	3 cut(s)	104, 274, 608
HapII	CCGG	1 cut(s)	12
HgaI	GACGC	1 cut(s)	193
Hin1I	GRCGYC	1 cut(s)	204
Hin1II	CATG	1 cut(s)	306
HinfI	GANTC	2 cut(s)	141, 176
HpaII	CCGG	1 cut(s)	12
HphI	GGTGA	1 cut(s)	518
Hpy166II	GTNNAC	2 cut(s)	113, 229
Hpy188I	TCNGA	3 cut(s)	96, 258, 418
Hpy188III	TCNNGA	1 cut(s)	136
Hpy8I	GTNNAC	2 cut(s)	113, 229
HpyAV	CCTTC	1 cut(s)	506
HpyCH4V	TGCA	7 cut(s)	91, 113, 171, 335, 383, 422, 446
HpyF10VI	GCNNNNNNNGC	3 cut(s)	110, 320, 614
HpyF3I	CTNAG	4 cut(s)	208, 315, 496, 618
Hsp92I	GRCGYC	1 cut(s)	204
Hsp92II	CATG	1 cut(s)	306
Kzo9I	GATC	1 cut(s)	253
LmnI	GCTCC	1 cut(s)	587
Lsp1109I	GCAGC	1 cut(s)	332
LweI	GCATC	4 cut(s)	100, 145, 322, 409
MaeIII	GTNAC	1 cut(s)	177
MalI	GATC	1 cut(s)	255
MboI	GATC	1 cut(s)	253
MboII	GAAGA	2 cut(s)	56, 521
MhlI	GDGCHC	2 cut(s)	115, 592
MluCI	AATT	1 cut(s)	4
MlyI	GAGTC	1 cut(s)	185
MnlI	CCTC	6 cut(s)	72, 94, 310, 496, 513, 517
Mph1103I	ATGCAT	2 cut(s)	337, 424
MseI	TTAA	5 cut(s)	23, 125, 198, 338, 425
MslI	CAYNNNNRTG	1 cut(s)	96
MspI	CCGG	1 cut(s)	12
MspR9I	CCNGG	3 cut(s)	12, 13, 358
MvaI	CCWGG	1 cut(s)	358
MwoI	GCNNNNNNNGC	3 cut(s)	110, 320, 614
NciI	CCSGG	2 cut(s)	12, 13
NdeII	GATC	1 cut(s)	253
NlaIII	CATG	1 cut(s)	306
NlaIV	GGNNCC	1 cut(s)	528
NmuCI	GTSAC	1 cut(s)	177
NsiI	ATGCAT	2 cut(s)	337, 424
PfeI	GAWTC	1 cut(s)	141
PkrI	GCNGC	1 cut(s)	322
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
Psp6I	CCWGG	1 cut(s)	356
PspGI	CCWGG	1 cut(s)	356
PspN4I	GGNNCC	1 cut(s)	528
PspPI	GGNCC	1 cut(s)	392
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
RseI	CAYNNNNRTG	1 cut(s)	96
SaqAI	TTAA	5 cut(s)	23, 125, 198, 338, 425
SatI	GCNGC	1 cut(s)	321
Sau3AI	GATC	1 cut(s)	253
Sau96I	GGNCC	1 cut(s)	392
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	3 cut(s)	12, 13, 358
SduI	GDGCHC	2 cut(s)	115, 592
SfaNI	GCATC	4 cut(s)	100, 145, 322, 409
SinI	GGWCC	1 cut(s)	392
SmaI	CCCGGG	1 cut(s)	13
SmiMI	CAYNNNNRTG	1 cut(s)	96
Sse9I	AATT	1 cut(s)	4
StyD4I	CCNGG	3 cut(s)	10, 11, 356
StyI	CCWWGG	1 cut(s)	286
TaqI	TCGA	2 cut(s)	67, 562
TasI	AATT	1 cut(s)	4
TfiI	GAWTC	1 cut(s)	141
Tru1I	TTAA	5 cut(s)	23, 125, 198, 338, 425
Tru9I	TTAA	5 cut(s)	23, 125, 198, 338, 425
TscAI	CASTG	3 cut(s)	112, 124, 446
TseFI	GTSAC	1 cut(s)	177
TseI	GCWGC	1 cut(s)	320
Tsp45I	GTSAC	1 cut(s)	177
TspDTI	ATGAA	3 cut(s)	17, 205, 207
TspMI	CCCGGG	1 cut(s)	11
TspRI	CASTG	3 cut(s)	112, 124, 446
VneI	GTGCAC	1 cut(s)	111
VpaK11BI	GGWCC	1 cut(s)	392
XmaI	CCCGGG	1 cut(s)	11
XmiI	GTMKAC	1 cut(s)	228
Zsp2I	ATGCAT	2 cut(s)	337, 424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.