Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014698.1

Orthogroup ID

OG0004989

Physical Location & Seq

Genomic Coordinates Reverse (-)

17456 .. 19121

Gene Structure 1666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014698.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

atgcaggacttgatgctatcttggtgccaagccaacaggttccctttcagaaaaagaagctttcagtttgtgcatttgaagtggccttcaaagtgctgcatgaaaatcaaattaagagaaaatgtgtactacatagcaggattgtggattttagtcctgtactcttgttctgctctagcaatcacagtggcaaatccaactgatcttgtcaaagttagacttcaagctgagggaaaactaccaccaggcgcaccaaggcgctattctggcgcgctcaatgcgcattccaccattttgagacaggagggagttggtgatctctggactgtaattggacctaacattgcacgtaatgctatcattaatgctgctgaactagccagttatgatcaagtgaagcaggtttttttgccgtctgaattggctcaccagttgatgtggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006865 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009506 GO:0009507 GO:0009536 GO:0009853 GO:0009987 GO:0015075 GO:0015171 GO:0015318 GO:0015672 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022857 GO:0030054 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1903825 GO:1905039 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

147

Amino Acids

16.69

Weight (kDa)

9.61

Isoelectric Point (pI)

45.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17960 AT1G17960
malus_domestica	MD15G1401700.v1.1 MD15G1402000.v1.1
rosa_chinensis	RchiOBHm_Chr4g0444231
rosa_laevigata	RLG00000005339 RLG00000005847 RLG00000008520 RLG00000020302
rosa_multiflora	Rmu_sc0000016.1_g000006 Rmu_sc0000987.1_g000022 Rmu_sc0014698.1_g000003
rosa_roxburghii	Rroxscaffold_3G00219500 Rroxscaffold_5G00384800
rosa_rugosa	Rorug03G0334500 Rorug07G0196800
rosa_samantha	Rh1BG152700 Rh1CG027000 Rh1DG185100 Rh2BG464200 Rh4AG158400 Rh4BG163900 Rh4CG184100 Rh4DG152900 Rh4DG153000 Rh5CG279500 Rh6BG190300 Rh7CG027100 Rh7DG026600 Rh7DG335900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	282
Acc36I	ACCTGC	1 cut(s)	391
AccB1I	GGYRCC	1 cut(s)	24
AccII	CGCG	1 cut(s)	272
AfaI	GTAC	2 cut(s)	128, 161
AgsI	TTSAA	3 cut(s)	79, 90, 224
AjnI	CCWGG	1 cut(s)	244
AjuI	GAANNNNNNNTTGG	2 cut(s)	247, 279
AluBI	AGCT	2 cut(s)	60, 227
AluI	AGCT	2 cut(s)	60, 227
Alw26I	GTCTC	1 cut(s)	292
AoxI	GGCC	1 cut(s)	83
ApeKI	GCWGC	2 cut(s)	96, 368
AseI	ATTAAT	1 cut(s)	363
AspLEI	GCGC	5 cut(s)	251, 261, 272, 274, 283
AspS9I	GGNCC	1 cut(s)	335
AsuHPI	GGTGA	2 cut(s)	326, 419
AvaII	GGWCC	1 cut(s)	335
BanI	GGYRCC	1 cut(s)	24
BbvCI	CCTCAGC	1 cut(s)	228
BbvI	GCAGC	2 cut(s)	83, 355
BceAI	ACGGC	1 cut(s)	397
BciT130I	CCWGG	1 cut(s)	246
BclI	TGATCA	1 cut(s)	388
BcoDI	GTCTC	1 cut(s)	292
BfaI	CTAG	2 cut(s)	176, 377
BfoI	RGCGCY	1 cut(s)	262
BfuAI	ACCTGC	1 cut(s)	391
BisI	GCNGC	2 cut(s)	97, 369
BlsI	GCNGC	2 cut(s)	98, 370
Bme1390I	CCNGG	1 cut(s)	246
Bme18I	GGWCC	1 cut(s)	335
BmgT120I	GGNCC	1 cut(s)	335
BmiI	GGNNCC	2 cut(s)	26, 41
BmrFI	CCNGG	1 cut(s)	246
BmsI	GCATC	1 cut(s)	3
Bpu10I	CCTNAGC	1 cut(s)	228
BsaAI	YACGTR	1 cut(s)	350
BsaJI	CCNNGG	1 cut(s)	254
Bse1I	ACTGG	2 cut(s)	381, 430
Bse3DI	GCAATG	1 cut(s)	342
BseBI	CCWGG	1 cut(s)	246
BseDI	CCNNGG	1 cut(s)	254
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	2 cut(s)	381, 430
BsePI	GCGCGC	1 cut(s)	270
BseXI	GCAGC	2 cut(s)	83, 355
Bsh1236I	CGCG	1 cut(s)	272
BshFI	GGCC	1 cut(s)	85
BshNI	GGYRCC	1 cut(s)	24
BsmAI	GTCTC	1 cut(s)	292
BsmI	GAATGC	1 cut(s)	283
BsnI	GGCC	1 cut(s)	85
Bsp143I	GATC	3 cut(s)	202, 316, 388
BspANI	GGCC	1 cut(s)	85
BspCNI	CTCAG	1 cut(s)	220
BspFNI	CGCG	1 cut(s)	272
BspLI	GGNNCC	2 cut(s)	26, 41
BspMI	ACCTGC	1 cut(s)	391
BspT107I	GGYRCC	1 cut(s)	24
BsrDI	GCAATG	1 cut(s)	342
BsrI	ACTGG	2 cut(s)	381, 430
BssECI	CCNNGG	1 cut(s)	254
BssHII	GCGCGC	1 cut(s)	270
BssMI	GATC	3 cut(s)	202, 316, 388
BssT1I	CCWWGG	1 cut(s)	254
Bst2UI	CCWGG	1 cut(s)	246
Bst4CI	ACNGT	2 cut(s)	187, 328
BstAPI	GCANNNNNTGC	1 cut(s)	353
BstBAI	YACGTR	1 cut(s)	350
BstC8I	GCNNGC	1 cut(s)	272
BstDEI	CTNAG	1 cut(s)	228
BstFNI	CGCG	1 cut(s)	272
BstH2I	RGCGCY	1 cut(s)	262
BstHHI	GCGC	5 cut(s)	251, 261, 272, 274, 283
BstKTI	GATC	3 cut(s)	205, 319, 391
BstMAI	GTCTC	1 cut(s)	292
BstMBI	GATC	3 cut(s)	202, 316, 388
BstMWI	GCNNNNNNNGC	5 cut(s)	267, 278, 280, 353, 377
BstNI	CCWGG	1 cut(s)	246
BstSCI	CCNGG	1 cut(s)	244
BstUI	CGCG	1 cut(s)	272
BstV1I	GCAGC	2 cut(s)	83, 355
BsuRI	GGCC	1 cut(s)	85
BtsIMutI	CAGTG	1 cut(s)	192
BveI	ACCTGC	1 cut(s)	391
Cac8I	GCNNGC	1 cut(s)	272
CfoI	GCGC	5 cut(s)	251, 261, 272, 274, 283
Cfr13I	GGNCC	1 cut(s)	335
Csp6I	GTAC	2 cut(s)	127, 160
CspCI	CAANNNNNGTGG	2 cut(s)	168, 203
CviAII	CATG	1 cut(s)	100
CviJI	RGCY	6 cut(s)	32, 60, 85, 227, 380, 425
CviKI_1	RGCY	6 cut(s)	32, 60, 85, 227, 380, 425
CviQI	GTAC	2 cut(s)	127, 160
DdeI	CTNAG	1 cut(s)	228
DpnI	GATC	3 cut(s)	204, 318, 390
DpnII	GATC	3 cut(s)	202, 316, 388
Eco130I	CCWWGG	1 cut(s)	254
Eco47I	GGWCC	1 cut(s)	335
EcoRII	CCWGG	1 cut(s)	244
EcoT14I	CCWWGG	1 cut(s)	254
ErhI	CCWWGG	1 cut(s)	254
FaeI	CATG	1 cut(s)	103
FaiI	YATR	3 cut(s)	101, 134, 387
FalI	AAGNNNNNCTT	2 cut(s)	204, 236
FatI	CATG	1 cut(s)	99
FbaI	TGATCA	1 cut(s)	388
Fnu4HI	GCNGC	2 cut(s)	97, 369
Fsp4HI	GCNGC	2 cut(s)	97, 369
FspAI	RTGCGCAY	1 cut(s)	282
FspBI	CTAG	2 cut(s)	176, 377
FspI	TGCGCA	1 cut(s)	282
GlaI	GCGC	5 cut(s)	250, 260, 271, 273, 282
GluI	GCNGC	2 cut(s)	97, 369
HaeII	RGCGCY	1 cut(s)	262
HaeIII	GGCC	1 cut(s)	85
HhaI	GCGC	5 cut(s)	251, 261, 272, 274, 283
Hin1II	CATG	1 cut(s)	103
Hin6I	GCGC	5 cut(s)	249, 259, 270, 272, 281
HinP1I	GCGC	5 cut(s)	249, 259, 270, 272, 281
HindIII	AAGCTT	1 cut(s)	58
HphI	GGTGA	2 cut(s)	326, 419
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	2 cut(s)	50, 418
Hpy188III	TCNNGA	1 cut(s)	322
Hpy8I	GTNNAC	1 cut(s)	127
HpyAV	CCTTC	1 cut(s)	96
HpyCH4III	ACNGT	2 cut(s)	187, 328
HpyCH4IV	ACGT	1 cut(s)	349
HpyCH4V	TGCA	4 cut(s)	4, 73, 99, 347
HpyF10VI	GCNNNNNNNGC	5 cut(s)	267, 278, 280, 353, 377
HpyF3I	CTNAG	1 cut(s)	228
HpySE526I	ACGT	1 cut(s)	349
Hsp92II	CATG	1 cut(s)	103
HspAI	GCGC	5 cut(s)	249, 259, 270, 272, 281
Ksp22I	TGATCA	1 cut(s)	388
Kzo9I	GATC	3 cut(s)	202, 316, 388
Lsp1109I	GCAGC	2 cut(s)	83, 355
LweI	GCATC	1 cut(s)	3
MaeI	CTAG	2 cut(s)	176, 377
MaeII	ACGT	1 cut(s)	349
MalI	GATC	3 cut(s)	204, 318, 390
MboI	GATC	3 cut(s)	202, 316, 388
MluCI	AATT	3 cut(s)	110, 330, 419
MmeI	TCCRAC	1 cut(s)	221
MnlI	CCTC	2 cut(s)	223, 298
MseI	TTAA	2 cut(s)	113, 363
MspR9I	CCNGG	1 cut(s)	246
Mva1269I	GAATGC	1 cut(s)	283
MvaI	CCWGG	1 cut(s)	246
MvnI	CGCG	1 cut(s)	272
MwoI	GCNNNNNNNGC	5 cut(s)	267, 278, 280, 353, 377
NdeII	GATC	3 cut(s)	202, 316, 388
NlaIII	CATG	1 cut(s)	103
NlaIV	GGNNCC	2 cut(s)	26, 41
NsbI	TGCGCA	1 cut(s)	282
PauI	GCGCGC	1 cut(s)	270
PctI	GAATGC	1 cut(s)	283
PkrI	GCNGC	2 cut(s)	98, 370
Ppu21I	YACGTR	1 cut(s)	350
PshBI	ATTAAT	1 cut(s)	363
Psp6I	CCWGG	1 cut(s)	244
PspGI	CCWGG	1 cut(s)	244
PspN4I	GGNNCC	2 cut(s)	26, 41
PspPI	GGNCC	1 cut(s)	335
PteI	GCGCGC	1 cut(s)	270
RsaI	GTAC	2 cut(s)	128, 161
RsaNI	GTAC	2 cut(s)	127, 160
SaqAI	TTAA	2 cut(s)	113, 363
SatI	GCNGC	2 cut(s)	97, 369
Sau3AI	GATC	3 cut(s)	202, 316, 388
Sau96I	GGNCC	1 cut(s)	335
ScrFI	CCNGG	1 cut(s)	246
SetI	ASST	6 cut(s)	41, 62, 229, 340, 352, 405
SfaNI	GCATC	1 cut(s)	3
SinI	GGWCC	1 cut(s)	335
Sse9I	AATT	3 cut(s)	110, 330, 419
SspMI	CTAG	2 cut(s)	176, 377
StyD4I	CCNGG	1 cut(s)	244
StyI	CCWWGG	1 cut(s)	254
TaaI	ACNGT	2 cut(s)	187, 328
TaiI	ACGT	1 cut(s)	352
TasI	AATT	3 cut(s)	110, 330, 419
TatI	WGTACW	2 cut(s)	126, 159
Tru1I	TTAA	2 cut(s)	113, 363
Tru9I	TTAA	2 cut(s)	113, 363
TscAI	CASTG	1 cut(s)	192
TseI	GCWGC	2 cut(s)	96, 368
TspDTI	ATGAA	1 cut(s)	116
TspRI	CASTG	1 cut(s)	192
VpaK11BI	GGWCC	1 cut(s)	335
VspI	ATTAAT	1 cut(s)	363
XspI	CTAG	2 cut(s)	176, 377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.