Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004989

Physical Location & Seq

Genomic Coordinates Forward (+)

63404525 .. 63406320

Gene Structure 1796 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020302

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGGTCCTGCCCCATCTCCTCCACACATCGTCGTCGATTCCACCACAGCCCAGATGAAATCCGAGAGTTTCCGGGCCCAGACACAGTTTTCCAGTTGTCACCTAAGCATTCAAGGTGAGGAAAACAAGTTATTTGAGCTGCCGATTGGCTATGACTGTGACTATGATGGATACCACAGGGGATGGTGCATTTTACAGACCAATATAGATACCAATGTATCTGATGCATTGAACCTGAAGTTTCAGTGTGCAACATTACAGCTACCTGCTCGCTTTGAGCTGTATTACTCAGCAGAGGGTGAAGAAGGCAAGAAGGAGGCACCTGTTATGATACACATAGCCATTTTCGGTTCTGTTGAGCGTTCTCTAGCAATAACAGTGGCAAATCCAACTGATCTTGTAAAAGTTAGACTTCGAGCTGAGAGAAAATTGCCACCAGGCACACCAAGGCGCTATTCTGGCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004829 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006435 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0030312 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071944 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon TGS tRNA-synt_2b tRNA_SAD

Protein Analysis

156

Amino Acids

17.26

Weight (kDa)

6.07

Isoelectric Point (pI)

56.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17960 AT1G17960
malus_domestica	MD15G1401700.v1.1 MD15G1402000.v1.1
rosa_chinensis	RchiOBHm_Chr4g0444231
rosa_laevigata	RLG00000005339 RLG00000005847 RLG00000008520 RLG00000020302
rosa_multiflora	Rmu_sc0000016.1_g000006 Rmu_sc0000987.1_g000022 Rmu_sc0014698.1_g000003
rosa_roxburghii	Rroxscaffold_3G00219500 Rroxscaffold_5G00384800
rosa_rugosa	Rorug03G0334500 Rorug07G0196800
rosa_samantha	Rh1BG152700 Rh1CG027000 Rh1DG185100 Rh2BG464200 Rh4AG158400 Rh4BG163900 Rh4CG184100 Rh4DG152900 Rh4DG153000 Rh5CG279500 Rh6BG190300 Rh7CG027100 Rh7DG026600 Rh7DG335900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	274
AccB1I	GGYRCC	1 cut(s)	319
AcuI	CTGAAG	1 cut(s)	257
AgsI	TTSAA	2 cut(s)	113, 232
AjnI	CCWGG	1 cut(s)	436
AjuI	GAANNNNNNNTTGG	1 cut(s)	439
AluBI	AGCT	4 cut(s)	139, 262, 280, 419
AluI	AGCT	4 cut(s)	139, 262, 280, 419
AoxI	GGCC	1 cut(s)	75
ApaI	GGGCCC	1 cut(s)	79
ApeKI	GCWGC	1 cut(s)	139
AspLEI	GCGC	1 cut(s)	453
AspS9I	GGNCC	3 cut(s)	5, 75, 76
AsuC2I	CCSGG	1 cut(s)	74
AsuHPI	GGTGA	3 cut(s)	92, 128, 311
AvaII	GGWCC	1 cut(s)	5
BaeGI	GKGCMC	1 cut(s)	79
BaeI	ACNNNNGTAYC	4 cut(s)	201, 201, 234, 234
BanI	GGYRCC	1 cut(s)	319
BanII	GRGCYC	1 cut(s)	79
BbvI	GCAGC	1 cut(s)	126
BccI	CCATC	3 cut(s)	22, 161, 177
BciT130I	CCWGG	1 cut(s)	438
BciVI	GTATCC	1 cut(s)	164
BcnI	CCSGG	1 cut(s)	74
BfaI	CTAG	1 cut(s)	368
BfoI	RGCGCY	1 cut(s)	454
BfuAI	ACCTGC	1 cut(s)	274
BfuI	GTATCC	1 cut(s)	164
BisI	GCNGC	1 cut(s)	140
BlsI	GCNGC	1 cut(s)	141
Bme1390I	CCNGG	2 cut(s)	74, 438
Bme18I	GGWCC	1 cut(s)	5
BmgT120I	GGNCC	3 cut(s)	5, 75, 76
BmiI	GGNNCC	3 cut(s)	6, 77, 321
BmrFI	CCNGG	2 cut(s)	74, 438
BmsI	GCATC	1 cut(s)	214
Bpu10I	CCTNAGC	1 cut(s)	104
BpuMI	CCSGG	1 cut(s)	74
BsaJI	CCNNGG	1 cut(s)	446
Bse1I	ACTGG	1 cut(s)	93
BseBI	CCWGG	1 cut(s)	438
BseDI	CCNNGG	1 cut(s)	446
BseGI	GGATG	1 cut(s)	188
BseMII	CTCAG	2 cut(s)	303, 411
BseNI	ACTGG	1 cut(s)	93
BseRI	GAGGAG	1 cut(s)	9
BseSI	GKGCMC	1 cut(s)	79
BseXI	GCAGC	1 cut(s)	126
BshFI	GGCC	1 cut(s)	77
BshNI	GGYRCC	1 cut(s)	319
BsiSI	CCGG	1 cut(s)	73
BsmI	GAATGC	1 cut(s)	108
BsnI	GGCC	1 cut(s)	77
Bsp120I	GGGCCC	1 cut(s)	75
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp143I	GATC	1 cut(s)	394
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	2 cut(s)	302, 412
BspLI	GGNNCC	3 cut(s)	6, 77, 321
BspMI	ACCTGC	1 cut(s)	274
BspT107I	GGYRCC	1 cut(s)	319
BsrI	ACTGG	1 cut(s)	93
BssECI	CCNNGG	1 cut(s)	446
BssMI	GATC	1 cut(s)	394
BssT1I	CCWWGG	1 cut(s)	446
Bst2UI	CCWGG	1 cut(s)	438
Bst4CI	ACNGT	3 cut(s)	87, 158, 379
BstC8I	GCNNGC	1 cut(s)	271
BstDEI	CTNAG	3 cut(s)	104, 289, 420
BstF5I	GGATG	1 cut(s)	188
BstH2I	RGCGCY	1 cut(s)	454
BstHHI	GCGC	1 cut(s)	453
BstKTI	GATC	1 cut(s)	397
BstMBI	GATC	1 cut(s)	394
BstMWI	GCNNNNNNNGC	1 cut(s)	459
BstNI	CCWGG	1 cut(s)	438
BstSCI	CCNGG	2 cut(s)	72, 436
BstSLI	GKGCMC	1 cut(s)	79
BstV1I	GCAGC	1 cut(s)	126
BsuI	GTATCC	1 cut(s)	164
BsuRI	GGCC	1 cut(s)	77
BtsCI	GGATG	1 cut(s)	188
BtsIMutI	CAGTG	2 cut(s)	251, 384
BveI	ACCTGC	1 cut(s)	274
Cac8I	GCNNGC	1 cut(s)	271
CfoI	GCGC	1 cut(s)	453
Cfr13I	GGNCC	3 cut(s)	5, 75, 76
CspCI	CAANNNNNGTGG	2 cut(s)	360, 395
CviJI	RGCY	8 cut(s)	50, 77, 139, 150, 262, 280, 341, 419
CviKI_1	RGCY	8 cut(s)	50, 77, 139, 150, 262, 280, 341, 419
DdeI	CTNAG	3 cut(s)	104, 289, 420
DpnI	GATC	1 cut(s)	396
DpnII	GATC	1 cut(s)	394
Eco130I	CCWWGG	1 cut(s)	446
Eco24I	GRGCYC	1 cut(s)	79
Eco47I	GGWCC	1 cut(s)	5
Eco57I	CTGAAG	1 cut(s)	257
EcoO109I	RGGNCCY	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	436
EcoT14I	CCWWGG	1 cut(s)	446
EcoT22I	ATGCAT	1 cut(s)	229
EcoT38I	GRGCYC	1 cut(s)	79
ErhI	CCWWGG	1 cut(s)	446
FaiI	YATR	5 cut(s)	153, 165, 206, 329, 338
FalI	AAGNNNNNCTT	2 cut(s)	396, 428
Fnu4HI	GCNGC	1 cut(s)	140
FokI	GGATG	1 cut(s)	195
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	1 cut(s)	140
FspBI	CTAG	1 cut(s)	368
GlaI	GCGC	1 cut(s)	452
GluI	GCNGC	1 cut(s)	140
HaeII	RGCGCY	1 cut(s)	454
HaeIII	GGCC	1 cut(s)	77
HapII	CCGG	1 cut(s)	73
HhaI	GCGC	1 cut(s)	453
Hin6I	GCGC	1 cut(s)	451
HinP1I	GCGC	1 cut(s)	451
HinfI	GANTC	1 cut(s)	38
HpaII	CCGG	1 cut(s)	73
HphI	GGTGA	3 cut(s)	92, 128, 311
Hpy188I	TCNGA	2 cut(s)	64, 223
Hpy99I	CGWCG	2 cut(s)	35, 38
HpyAV	CCTTC	2 cut(s)	299, 307
HpyCH4III	ACNGT	3 cut(s)	87, 158, 379
HpyCH4V	TGCA	3 cut(s)	189, 227, 251
HpyF10VI	GCNNNNNNNGC	1 cut(s)	459
HpyF3I	CTNAG	3 cut(s)	104, 289, 420
HspAI	GCGC	1 cut(s)	451
Kzo9I	GATC	1 cut(s)	394
Lsp1109I	GCAGC	1 cut(s)	126
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	1 cut(s)	368
MaeIII	GTNAC	2 cut(s)	98, 158
MalI	GATC	1 cut(s)	396
MboI	GATC	1 cut(s)	394
MboII	GAAGA	1 cut(s)	314
MfeI	CAATTG	1 cut(s)	463
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	2 cut(s)	428, 463
MmeI	TCCRAC	1 cut(s)	413
MnlI	CCTC	4 cut(s)	30, 112, 289, 310
Mph1103I	ATGCAT	1 cut(s)	229
MspI	CCGG	1 cut(s)	73
MspR9I	CCNGG	2 cut(s)	74, 438
MunI	CAATTG	1 cut(s)	463
Mva1269I	GAATGC	1 cut(s)	108
MvaI	CCWGG	1 cut(s)	438
MwoI	GCNNNNNNNGC	1 cut(s)	459
NciI	CCSGG	1 cut(s)	74
NdeII	GATC	1 cut(s)	394
NlaIV	GGNNCC	3 cut(s)	6, 77, 321
NmuCI	GTSAC	2 cut(s)	98, 158
NsiI	ATGCAT	1 cut(s)	229
PctI	GAATGC	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	38
PkrI	GCNGC	1 cut(s)	141
PpuMI	RGGWCCY	1 cut(s)	5
Psp5II	RGGWCCY	1 cut(s)	5
Psp6I	CCWGG	1 cut(s)	436
PspGI	CCWGG	1 cut(s)	436
PspN4I	GGNNCC	3 cut(s)	6, 77, 321
PspOMI	GGGCCC	1 cut(s)	75
PspPI	GGNCC	3 cut(s)	5, 75, 76
PspPPI	RGGWCCY	1 cut(s)	5
SatI	GCNGC	1 cut(s)	140
Sau3AI	GATC	1 cut(s)	394
Sau96I	GGNCC	3 cut(s)	5, 75, 76
ScrFI	CCNGG	2 cut(s)	74, 438
SduI	GDGCHC	1 cut(s)	79
SetI	ASST	9 cut(s)	105, 118, 141, 237, 264, 268, 282, 325, 421
SfaNI	GCATC	1 cut(s)	214
SinI	GGWCC	1 cut(s)	5
Sse9I	AATT	2 cut(s)	428, 463
SspMI	CTAG	1 cut(s)	368
StyD4I	CCNGG	2 cut(s)	72, 436
StyI	CCWWGG	1 cut(s)	446
TaaI	ACNGT	3 cut(s)	87, 158, 379
TaqI	TCGA	2 cut(s)	36, 415
TasI	AATT	2 cut(s)	428, 463
TfiI	GAWTC	1 cut(s)	38
TscAI	CASTG	2 cut(s)	251, 384
TseFI	GTSAC	2 cut(s)	98, 158
TseI	GCWGC	1 cut(s)	139
Tsp45I	GTSAC	2 cut(s)	98, 158
TspDTI	ATGAA	1 cut(s)	71
TspRI	CASTG	2 cut(s)	251, 384
VpaK11BI	GGWCC	1 cut(s)	5
XspI	CTAG	1 cut(s)	368
Zsp2I	ATGCAT	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.