Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0004989

Physical Location & Seq

Genomic Coordinates Forward (+)

30471198 .. 30486599

Gene Structure 15402 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG279500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGTAAATGAAGGGGATGGTGCATTTTACAGACCAAAGATAGATACCAATGTATCTGATGCATTGAACATGAAGTTTCAGTGTGCAACATTACAGCTTGATTTTCAGCTACCTGCTCGCTTTGAGCTGTATTACTCAGCAGAGGGTGAAGAAGGCAAGAAGGAGGCACCTGTTATGATACACATAGCCATTTTCGGTTCTGTTGAGCGTTCTCTAGCAATAACAGTGGCAAATCCAACTGATCTTGTAAAAGTTAGACTTCGAGCTGAGAGAAAATTGCCACCAGGCGCACCAAGGCGCTATTCTGGCACATTAAATGCGTCTTCCACCATCTTGAGACAGGAAGGAGTTGGGGTTCTCTGGACTGGAATTGGACCTAACATTGCACGTAATGCTATGATTAATGCTGCTGAACTAGCCAGATATGATCAAGTGAAGCAGATCGAAGAAAATGGTGACGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006865 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009506 GO:0009507 GO:0009536 GO:0009853 GO:0009987 GO:0015075 GO:0015171 GO:0015318 GO:0015672 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022857 GO:0030054 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1903825 GO:1905039 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

154

Amino Acids

16.97

Weight (kDa)

5.89

Isoelectric Point (pI)

43.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_2b	PF00587	7 - 78	6.3e-10	tRNA synthetase class II core domain (G, H, P, S and T)
Mito_carr	PF00153	63 - 148	1.1e-15	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17960 AT1G17960
malus_domestica	MD15G1401700.v1.1 MD15G1402000.v1.1
rosa_chinensis	RchiOBHm_Chr4g0444231
rosa_laevigata	RLG00000005339 RLG00000005847 RLG00000008520 RLG00000020302
rosa_multiflora	Rmu_sc0000016.1_g000006 Rmu_sc0000987.1_g000022 Rmu_sc0014698.1_g000003
rosa_roxburghii	Rroxscaffold_3G00219500 Rroxscaffold_5G00384800
rosa_rugosa	Rorug03G0334500 Rorug07G0196800
rosa_samantha	Rh1BG152700 Rh1CG027000 Rh1DG185100 Rh2BG464200 Rh4AG158400 Rh4BG163900 Rh4CG184100 Rh4DG152900 Rh4DG153000 Rh5CG279500 Rh6BG190300 Rh7CG027100 Rh7DG026600 Rh7DG335900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	121
AccB1I	GGYRCC	1 cut(s)	166
AgsI	TTSAA	1 cut(s)	67
AjnI	CCWGG	1 cut(s)	283
AjuI	GAANNNNNNNTTGG	2 cut(s)	286, 318
AloI	GAACNNNNNNTCC	2 cut(s)	339, 371
AluBI	AGCT	4 cut(s)	97, 109, 127, 266
AluI	AGCT	4 cut(s)	97, 109, 127, 266
Alw26I	GTCTC	1 cut(s)	331
ApeKI	GCWGC	1 cut(s)	407
AseI	ATTAAT	1 cut(s)	402
AspLEI	GCGC	2 cut(s)	290, 300
AspS9I	GGNCC	1 cut(s)	374
AsuHPI	GGTGA	1 cut(s)	158
AvaII	GGWCC	1 cut(s)	374
BaeI	ACNNNNGTAYC	4 cut(s)	36, 36, 69, 69
BanI	GGYRCC	1 cut(s)	166
BbsI	GAAGAC	1 cut(s)	315
BbvI	GCAGC	1 cut(s)	394
BccI	CCATC	2 cut(s)	11, 338
BciT130I	CCWGG	1 cut(s)	285
BclI	TGATCA	1 cut(s)	427
BcoDI	GTCTC	1 cut(s)	331
BfaI	CTAG	2 cut(s)	215, 416
BfoI	RGCGCY	1 cut(s)	301
BfuAI	ACCTGC	1 cut(s)	121
BisI	GCNGC	1 cut(s)	408
BlsI	GCNGC	1 cut(s)	409
Bme1390I	CCNGG	1 cut(s)	285
Bme18I	GGWCC	1 cut(s)	374
BmgT120I	GGNCC	1 cut(s)	374
BmiI	GGNNCC	1 cut(s)	168
BmrFI	CCNGG	1 cut(s)	285
BmsI	GCATC	1 cut(s)	49
BpiI	GAAGAC	1 cut(s)	315
BpuEI	CTTGAG	1 cut(s)	355
BsaAI	YACGTR	1 cut(s)	389
BsaJI	CCNNGG	1 cut(s)	293
BsaXI	ACNNNNNCTCC	2 cut(s)	339, 369
Bse1I	ACTGG	1 cut(s)	370
Bse3DI	GCAATG	1 cut(s)	381
BseBI	CCWGG	1 cut(s)	285
BseDI	CCNNGG	1 cut(s)	293
BseGI	GGATG	1 cut(s)	22
BseMI	GCAATG	1 cut(s)	381
BseMII	CTCAG	2 cut(s)	150, 258
BseNI	ACTGG	1 cut(s)	370
BseXI	GCAGC	1 cut(s)	394
BshNI	GGYRCC	1 cut(s)	166
BsmAI	GTCTC	1 cut(s)	331
Bsp143I	GATC	3 cut(s)	241, 427, 441
BspCNI	CTCAG	2 cut(s)	149, 259
BspLI	GGNNCC	1 cut(s)	168
BspMI	ACCTGC	1 cut(s)	121
BspT107I	GGYRCC	1 cut(s)	166
BsrDI	GCAATG	1 cut(s)	381
BsrI	ACTGG	1 cut(s)	370
BssECI	CCNNGG	1 cut(s)	293
BssMI	GATC	3 cut(s)	241, 427, 441
BssT1I	CCWWGG	1 cut(s)	293
Bst2UI	CCWGG	1 cut(s)	285
Bst4CI	ACNGT	1 cut(s)	226
BstAPI	GCANNNNNTGC	1 cut(s)	392
BstBAI	YACGTR	1 cut(s)	389
BstC8I	GCNNGC	1 cut(s)	118
BstDEI	CTNAG	2 cut(s)	136, 267
BstF5I	GGATG	1 cut(s)	22
BstH2I	RGCGCY	1 cut(s)	301
BstHHI	GCGC	2 cut(s)	290, 300
BstKTI	GATC	3 cut(s)	244, 430, 444
BstMAI	GTCTC	1 cut(s)	331
BstMBI	GATC	3 cut(s)	241, 427, 441
BstMWI	GCNNNNNNNGC	3 cut(s)	306, 392, 416
BstNI	CCWGG	1 cut(s)	285
BstSCI	CCNGG	1 cut(s)	283
BstV1I	GCAGC	1 cut(s)	394
BstV2I	GAAGAC	1 cut(s)	315
BtsCI	GGATG	1 cut(s)	22
BtsIMutI	CAGTG	2 cut(s)	86, 231
BveI	ACCTGC	1 cut(s)	121
Cac8I	GCNNGC	1 cut(s)	118
CfoI	GCGC	2 cut(s)	290, 300
Cfr13I	GGNCC	1 cut(s)	374
CseI	GACGC	1 cut(s)	309
CspCI	CAANNNNNGTGG	2 cut(s)	207, 242
CviAII	CATG	1 cut(s)	70
CviJI	RGCY	6 cut(s)	97, 109, 127, 188, 266, 419
CviKI_1	RGCY	6 cut(s)	97, 109, 127, 188, 266, 419
DdeI	CTNAG	2 cut(s)	136, 267
DpnI	GATC	3 cut(s)	243, 429, 443
DpnII	GATC	3 cut(s)	241, 427, 441
Eco130I	CCWWGG	1 cut(s)	293
Eco47I	GGWCC	1 cut(s)	374
EcoRII	CCWGG	1 cut(s)	283
EcoT14I	CCWWGG	1 cut(s)	293
EcoT22I	ATGCAT	1 cut(s)	64
ErhI	CCWWGG	1 cut(s)	293
FaeI	CATG	1 cut(s)	73
FaiI	YATR	5 cut(s)	71, 176, 185, 398, 426
FalI	AAGNNNNNCTT	2 cut(s)	243, 275
FatI	CATG	1 cut(s)	69
FbaI	TGATCA	1 cut(s)	427
Fnu4HI	GCNGC	1 cut(s)	408
FokI	GGATG	1 cut(s)	29
Fsp4HI	GCNGC	1 cut(s)	408
FspBI	CTAG	2 cut(s)	215, 416
GlaI	GCGC	2 cut(s)	289, 299
GluI	GCNGC	1 cut(s)	408
HaeII	RGCGCY	1 cut(s)	301
HgaI	GACGC	1 cut(s)	309
HhaI	GCGC	2 cut(s)	290, 300
Hin1II	CATG	1 cut(s)	73
Hin6I	GCGC	2 cut(s)	288, 298
HinP1I	GCGC	2 cut(s)	288, 298
HphI	GGTGA	1 cut(s)	158
Hpy188I	TCNGA	1 cut(s)	58
Hpy188III	TCNNGA	2 cut(s)	334, 361
HpyAV	CCTTC	4 cut(s)	5, 146, 154, 338
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4IV	ACGT	2 cut(s)	388, 459
HpyCH4V	TGCA	4 cut(s)	23, 62, 86, 386
HpyF10VI	GCNNNNNNNGC	3 cut(s)	306, 392, 416
HpyF3I	CTNAG	2 cut(s)	136, 267
HpySE526I	ACGT	2 cut(s)	388, 459
Hsp92II	CATG	1 cut(s)	73
HspAI	GCGC	2 cut(s)	288, 298
Ksp22I	TGATCA	1 cut(s)	427
Kzo9I	GATC	3 cut(s)	241, 427, 441
LpnPI	CCDG	9 cut(s)	126, 183, 270, 291, 297, 326, 346, 351, 433
Lsp1109I	GCAGC	1 cut(s)	394
LweI	GCATC	1 cut(s)	49
MaeI	CTAG	2 cut(s)	215, 416
MaeII	ACGT	2 cut(s)	388, 459
MaeIII	GTNAC	1 cut(s)	455
MalI	GATC	3 cut(s)	243, 429, 443
MboI	GATC	3 cut(s)	241, 427, 441
MboII	GAAGA	3 cut(s)	161, 315, 458
MluCI	AATT	2 cut(s)	275, 369
MmeI	TCCRAC	1 cut(s)	260
MnlI	CCTC	2 cut(s)	136, 157
Mph1103I	ATGCAT	1 cut(s)	64
MseI	TTAA	2 cut(s)	314, 402
MspR9I	CCNGG	1 cut(s)	285
MvaI	CCWGG	1 cut(s)	285
MwoI	GCNNNNNNNGC	3 cut(s)	306, 392, 416
NdeII	GATC	3 cut(s)	241, 427, 441
NlaIII	CATG	1 cut(s)	73
NlaIV	GGNNCC	1 cut(s)	168
NmuCI	GTSAC	1 cut(s)	455
NsiI	ATGCAT	1 cut(s)	64
PkrI	GCNGC	1 cut(s)	409
Ppu21I	YACGTR	1 cut(s)	389
PshBI	ATTAAT	1 cut(s)	402
Psp6I	CCWGG	1 cut(s)	283
PspGI	CCWGG	1 cut(s)	283
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	1 cut(s)	374
SaqAI	TTAA	2 cut(s)	314, 402
SatI	GCNGC	1 cut(s)	408
Sau3AI	GATC	3 cut(s)	241, 427, 441
Sau96I	GGNCC	1 cut(s)	374
ScrFI	CCNGG	1 cut(s)	285
SetI	ASST	9 cut(s)	99, 111, 115, 129, 172, 268, 379, 391, 462
SfaNI	GCATC	1 cut(s)	49
SinI	GGWCC	1 cut(s)	374
SmlI	CTYRAG	1 cut(s)	334
SmoI	CTYRAG	1 cut(s)	334
Sse9I	AATT	2 cut(s)	275, 369
SspMI	CTAG	2 cut(s)	215, 416
StyD4I	CCNGG	1 cut(s)	283
StyI	CCWWGG	1 cut(s)	293
TaaI	ACNGT	1 cut(s)	226
TaiI	ACGT	2 cut(s)	391, 462
TaqI	TCGA	2 cut(s)	262, 444
TasI	AATT	2 cut(s)	275, 369
Tru1I	TTAA	2 cut(s)	314, 402
Tru9I	TTAA	2 cut(s)	314, 402
TscAI	CASTG	2 cut(s)	86, 231
TseFI	GTSAC	1 cut(s)	455
TseI	GCWGC	1 cut(s)	407
Tsp45I	GTSAC	1 cut(s)	455
TspDTI	ATGAA	2 cut(s)	24, 86
TspRI	CASTG	2 cut(s)	86, 231
VpaK11BI	GGWCC	1 cut(s)	374
VspI	ATTAAT	1 cut(s)	402
XspI	CTAG	2 cut(s)	215, 416
Zsp2I	ATGCAT	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.