Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001927

Physical Location & Seq

Genomic Coordinates Reverse (-)

14170351 .. 14172106

Gene Structure 1756 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G37140.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGAAACGAAAAAACCCACTAAATCTTTAAACCCATACGCACCGGCGTTTACTCCTCCTTCTCGTTCTCCTCCTTTGTTTAACTTTAACAAGCCATTTCCTTGTTACAACAAGCCTTTTAAAGCTATTACCGGCGCTCATGTTAAGCCGGAAAAAAACCCTTTCGTCCGTTATGGGTTTTGTCACCGGAGATGTCTCCCACCAAGGCTTTTGAAGAAGCCTTTACCGGAAAATAAGCTCGCCGGAAGAACCTCGGTCATGGTTAAGAATATACCTAACTGTCTCGGACGAATGGATCTCTTGAGGATTTTGGACAATCATTGTCGGAAACACAATGAAAAATCTTCCTACGACTTTCTTTATCTGCCTATGGATTTTGGGAAACGAGCCAATTTGGGTTACGCCTTCGTTAACTTCACGAGCTCTCTCGCAGCGGAGAGATTCCGGAGAGAATTTGAAAACTTCTCTTGGGACAATATCGGGTTCAGGAAGAAGATTTGCGAAATTACAGTGGCTAAGTATCAGGGGAAAGAAGAGCTGACTCGACATTTCAGGAACTCAAGGTTTACTTGCCACACCGACGATTATCTCCCGGTGGTTCTCTCGCCCCCGAGCAACGGCTTCACGGCTTATACTCTCACAAAACTTGGTTACCGAGTCGGCGCACTTGGTGGTGGTTCACGAAACGCTTCATTGCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_2

Protein Analysis

233

Amino Acids

26.76

Weight (kDa)

10.02

Isoelectric Point (pI)

50.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_2	PF04059	98 - 154	6.4e-07	RNA recognition motif 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G37140 AT1G37140
fragaria_vesca	FvH4_2g26190 FvH4_2g26200 FvH4_2g26210 FvH4_2g26220
malus_domestica	MD08G1171900.v1.1 MD08G1172100.v1.1 MD15G1357500.v1.1
prunus_persica	Prupe.1G504600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0294631 RchiOBHm_Chr6g0294781 RchiOBHm_Chr6g0294791
rosa_laevigata	RLG00000011840 RLG00000011841 RLG00000011842 RLG00000011853
rosa_multiflora	Rmu_sc0001331.1_g000005 Rmu_sc0001331.1_g000006 Rmu_sc0006264.1_g000009
rosa_roxburghii	Rroxscaffold_7G00173010 Rroxscaffold_7G00173020 Rroxscaffold_7G00173030 Rroxscaffold_7G00173150
rosa_rugosa	Rorug06G0246400 Rorug06G0246900 Rorug06G0246900 Rorug06G0246900
rosa_samantha	Rh6AG358800 Rh6AG360300 Rh6AG360400 Rh6BG366000 Rh6BG366900 Rh6BG367000 Rh6BG367100 Rh6CG372600 Rh6CG372800 Rh6CG374000 Rh6CG374100 Rh6DG359400 Rh6DG359700 Rh6DG360600 Rh6DG360700
rosa_wichuraiana	Rw6G031310 Rw6G031430 Rw6G031440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	444
AciI	CCGC	1 cut(s)	434
AclWI	GGATC	1 cut(s)	303
AcsI	RAATTY	1 cut(s)	452
AdeI	CACNNNGTG	1 cut(s)	671
AfiI	CCNNNNNNNGG	1 cut(s)	617
AgsI	TTSAA	2 cut(s)	214, 458
AluBI	AGCT	4 cut(s)	125, 238, 423, 538
AluI	AGCT	4 cut(s)	125, 238, 423, 538
Alw21I	GWGCWC	1 cut(s)	425
Alw26I	GTCTC	2 cut(s)	200, 287
AlwI	GGATC	1 cut(s)	303
Ama87I	CYCGRG	1 cut(s)	610
Aor13HI	TCCGGA	1 cut(s)	444
ApeKI	GCWGC	1 cut(s)	431
ApoI	RAATTY	1 cut(s)	452
Asp700I	GAANNNNTTC	1 cut(s)	688
AspLEI	GCGC	2 cut(s)	137, 665
AsuC2I	CCSGG	1 cut(s)	593
AsuHPI	GGTGA	1 cut(s)	176
AvaI	CYCGRG	1 cut(s)	610
BanII	GRGCYC	1 cut(s)	425
BauI	CACGAG	1 cut(s)	418
Bbv12I	GWGCWC	1 cut(s)	425
BbvI	GCAGC	1 cut(s)	443
BceAI	ACGGC	2 cut(s)	634, 642
BcnI	CCSGG	1 cut(s)	593
BcoDI	GTCTC	2 cut(s)	200, 287
BfoI	RGCGCY	1 cut(s)	138
BisI	GCNGC	1 cut(s)	432
BlsI	GCNGC	1 cut(s)	433
Bme1390I	CCNGG	1 cut(s)	593
BmeT110I	CYCGRG	1 cut(s)	610
BmrFI	CCNGG	1 cut(s)	593
BpuEI	CTTGAG	2 cut(s)	322, 544
BpuMI	CCSGG	1 cut(s)	593
BsaJI	CCNNGG	2 cut(s)	203, 252
BsaWI	WCCGGW	3 cut(s)	186, 226, 444
Bsc4I	CCNNNNNNNGG	1 cut(s)	617
Bse118I	RCCGGY	2 cut(s)	43, 131
Bse3DI	GCAATG	1 cut(s)	692
BseAI	TCCGGA	1 cut(s)	444
BseDI	CCNNGG	2 cut(s)	203, 252
BseLI	CCNNNNNNNGG	1 cut(s)	617
BseMI	GCAATG	1 cut(s)	692
BseRI	GAGGAG	2 cut(s)	45, 60
BseXI	GCAGC	1 cut(s)	443
BsiHKAI	GWGCWC	1 cut(s)	425
BsiHKCI	CYCGRG	1 cut(s)	610
BsiSI	CCGG	8 cut(s)	44, 132, 149, 187, 227, 243, 445, 593
BslFI	GGGAC	1 cut(s)	485
BslI	CCNNNNNNNGG	1 cut(s)	617
BsmAI	GTCTC	2 cut(s)	200, 287
BsmFI	GGGAC	1 cut(s)	485
BsoBI	CYCGRG	1 cut(s)	610
Bsp1286I	GDGCHC	1 cut(s)	425
Bsp13I	TCCGGA	1 cut(s)	444
Bsp143I	GATC	1 cut(s)	295
BspACI	CCGC	1 cut(s)	434
BspEI	TCCGGA	1 cut(s)	444
BspPI	GGATC	1 cut(s)	303
BspQI	GCTCTTC	1 cut(s)	528
BsrDI	GCAATG	1 cut(s)	692
BsrFI	RCCGGY	2 cut(s)	43, 131
BssAI	RCCGGY	2 cut(s)	43, 131
BssECI	CCNNGG	2 cut(s)	203, 252
BssMI	GATC	1 cut(s)	295
BssSI	CACGAG	1 cut(s)	418
BssT1I	CCWWGG	1 cut(s)	203
Bst2BI	CACGAG	1 cut(s)	418
Bst4CI	ACNGT	2 cut(s)	281, 511
Bst6I	CTCTTC	1 cut(s)	528
BstC8I	GCNNGC	1 cut(s)	240
BstDEI	CTNAG	1 cut(s)	516
BstEII	GGTNACC	1 cut(s)	650
BstH2I	RGCGCY	1 cut(s)	138
BstHHI	GCGC	2 cut(s)	137, 665
BstKTI	GATC	1 cut(s)	298
BstMAI	GTCTC	2 cut(s)	200, 287
BstMBI	GATC	1 cut(s)	295
BstPI	GGTNACC	1 cut(s)	650
BstSCI	CCNGG	1 cut(s)	591
BstV1I	GCAGC	1 cut(s)	443
BstX2I	RGATCY	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	295
BtsIMutI	CAGTG	1 cut(s)	516
Cac8I	GCNNGC	1 cut(s)	240
CfoI	GCGC	2 cut(s)	137, 665
Cfr10I	RCCGGY	2 cut(s)	43, 131
CviAII	CATG	2 cut(s)	140, 259
DdeI	CTNAG	1 cut(s)	516
DpnI	GATC	1 cut(s)	297
DpnII	GATC	1 cut(s)	295
DraI	TTTAAA	2 cut(s)	30, 121
DraIII	CACNNNGTG	1 cut(s)	671
Eam1104I	CTCTTC	1 cut(s)	528
EarI	CTCTTC	1 cut(s)	528
Ecl136II	GAGCTC	1 cut(s)	423
Eco130I	CCWWGG	1 cut(s)	203
Eco24I	GRGCYC	1 cut(s)	425
Eco53kI	GAGCTC	1 cut(s)	423
Eco88I	CYCGRG	1 cut(s)	610
Eco91I	GGTNACC	1 cut(s)	650
EcoICRI	GAGCTC	1 cut(s)	423
EcoO65I	GGTNACC	1 cut(s)	650
EcoT14I	CCWWGG	1 cut(s)	203
EcoT38I	GRGCYC	1 cut(s)	425
ErhI	CCWWGG	1 cut(s)	203
FaeI	CATG	2 cut(s)	143, 262
FaiI	YATR	7 cut(s)	37, 141, 174, 260, 272, 371, 633
FalI	AAGNNNNNCTT	2 cut(s)	553, 585
FaqI	GGGAC	1 cut(s)	485
FatI	CATG	2 cut(s)	139, 258
Fnu4HI	GCNGC	1 cut(s)	432
FriOI	GRGCYC	1 cut(s)	425
Fsp4HI	GCNGC	1 cut(s)	432
GlaI	GCGC	2 cut(s)	136, 664
GluI	GCNGC	1 cut(s)	432
HaeII	RGCGCY	1 cut(s)	138
HapII	CCGG	8 cut(s)	44, 132, 149, 187, 227, 243, 445, 593
HhaI	GCGC	2 cut(s)	137, 665
Hin1II	CATG	2 cut(s)	143, 262
Hin6I	GCGC	2 cut(s)	135, 663
HinP1I	GCGC	2 cut(s)	135, 663
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HinfI	GANTC	3 cut(s)	441, 541, 657
HpaI	GTTAAC	1 cut(s)	412
HpaII	CCGG	8 cut(s)	44, 132, 149, 187, 227, 243, 445, 593
HphI	GGTGA	1 cut(s)	176
Hpy166II	GTNNAC	4 cut(s)	51, 412, 567, 680
Hpy188I	TCNGA	2 cut(s)	287, 327
Hpy188III	TCNNGA	6 cut(s)	301, 418, 445, 487, 553, 681
Hpy8I	GTNNAC	4 cut(s)	51, 412, 567, 680
Hpy99I	CGWCG	1 cut(s)	584
HpyAV	CCTTC	2 cut(s)	69, 415
HpyCH4III	ACNGT	2 cut(s)	281, 511
HpyF3I	CTNAG	1 cut(s)	516
Hsp92II	CATG	2 cut(s)	143, 262
HspAI	GCGC	2 cut(s)	135, 663
Kpn2I	TCCGGA	1 cut(s)	444
KspAI	GTTAAC	1 cut(s)	412
Kzo9I	GATC	1 cut(s)	295
LguI	GCTCTTC	1 cut(s)	528
Lsp1109I	GCAGC	1 cut(s)	443
MaeIII	GTNAC	4 cut(s)	104, 182, 398, 650
MalI	GATC	1 cut(s)	297
MboI	GATC	1 cut(s)	295
MboII	GAAGA	6 cut(s)	226, 258, 336, 502, 505, 545
MflI	RGATCY	1 cut(s)	295
MhlI	GDGCHC	1 cut(s)	425
MluCI	AATT	3 cut(s)	391, 452, 504
MlyI	GAGTC	2 cut(s)	535, 666
MmeI	TCCRAC	1 cut(s)	305
MnlI	CCTC	4 cut(s)	66, 81, 262, 297
MroI	TCCGGA	1 cut(s)	444
MroXI	GAANNNNTTC	1 cut(s)	688
MseI	TTAA	8 cut(s)	29, 81, 87, 120, 144, 264, 411, 700
MspA1I	CMGCKG	1 cut(s)	434
MspI	CCGG	8 cut(s)	44, 132, 149, 187, 227, 243, 445, 593
MspR9I	CCNGG	1 cut(s)	593
NciI	CCSGG	1 cut(s)	593
NdeII	GATC	1 cut(s)	295
NlaIII	CATG	2 cut(s)	143, 262
NmuCI	GTSAC	1 cut(s)	182
PciSI	GCTCTTC	1 cut(s)	528
PdmI	GAANNNNTTC	1 cut(s)	688
PfeI	GAWTC	1 cut(s)	441
PkrI	GCNGC	1 cut(s)	433
PleI	GAGTC	2 cut(s)	535, 665
PpsI	GAGTC	2 cut(s)	535, 665
Psp124BI	GAGCTC	1 cut(s)	425
PspEI	GGTNACC	1 cut(s)	650
PsuI	RGATCY	1 cut(s)	295
SacI	GAGCTC	1 cut(s)	425
SapI	GCTCTTC	1 cut(s)	528
SaqAI	TTAA	8 cut(s)	29, 81, 87, 120, 144, 264, 411, 700
SatI	GCNGC	1 cut(s)	432
Sau3AI	GATC	1 cut(s)	295
SchI	GAGTC	2 cut(s)	535, 666
ScrFI	CCNGG	1 cut(s)	593
SduI	GDGCHC	1 cut(s)	425
SetI	ASST	7 cut(s)	127, 240, 254, 277, 425, 540, 566
SgrAI	CRCCGGYG	1 cut(s)	43
SmlI	CTYRAG	2 cut(s)	301, 559
SmoI	CTYRAG	2 cut(s)	301, 559
Sse9I	AATT	3 cut(s)	391, 452, 504
SsiI	CCGC	1 cut(s)	434
SstI	GAGCTC	1 cut(s)	425
StyD4I	CCNGG	1 cut(s)	591
StyI	CCWWGG	1 cut(s)	203
TaaI	ACNGT	2 cut(s)	281, 511
TaqI	TCGA	1 cut(s)	544
TaqII	GACCGA	1 cut(s)	244
TasI	AATT	3 cut(s)	391, 452, 504
TfiI	GAWTC	1 cut(s)	441
Tru1I	TTAA	8 cut(s)	29, 81, 87, 120, 144, 264, 411, 700
Tru9I	TTAA	8 cut(s)	29, 81, 87, 120, 144, 264, 411, 700
TscAI	CASTG	1 cut(s)	516
TseFI	GTSAC	1 cut(s)	182
TseI	GCWGC	1 cut(s)	431
Tsp45I	GTSAC	1 cut(s)	182
TspDTI	ATGAA	2 cut(s)	351, 681
TspGWI	ACGGA	1 cut(s)	158
TspRI	CASTG	1 cut(s)	516
XapI	RAATTY	1 cut(s)	452
XmnI	GAANNNNTTC	1 cut(s)	688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.