Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001927

Physical Location & Seq

Genomic Coordinates Reverse (-)

21076359 .. 21077437

Gene Structure 1079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g26200.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGAGACGACTTCGGAAAAGGAAGGCTGGTGCTGGAGGTGTGATTCCATTTCCAACAGGTCCGGATCAGCAAGACAATAAGTCGTCAGTTACTCCAACTACTATCATGATAAAGAATATACCAAACCTGCAGTTCAGATATATCAGTTTAGAAAAGTTGAAAACGCTGCGTTTTAGGCAACATATGATTTCTGAGAATTTAGTGACCACCATGCAATTTGGGTTGCGCATTTGTAAACTTCACTGTGCAGTCGGGGCACGAAGGTTCTACCAGCATTACCACAATTTCAAGTGGGATGTCGAACACAACAAAAAAACTTGTGAAATCACCTCCGCTATAGTTCAGGGAAAGAAAGCACTAATCAGGAATTTTAGGCGCAAAGTATTCTGGTGCGAGTGTGACGAGTACTTGCCTGTGGTGGTCGCCTCCGAAGCTCATTGTTGTTGGAAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_2

Protein Analysis

152

Amino Acids

17.67

Weight (kDa)

9.96

Isoelectric Point (pI)

51.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G37140 AT1G37140
fragaria_vesca	FvH4_2g26190 FvH4_2g26200 FvH4_2g26210 FvH4_2g26220
malus_domestica	MD08G1171900.v1.1 MD08G1172100.v1.1 MD15G1357500.v1.1
prunus_persica	Prupe.1G504600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0294631 RchiOBHm_Chr6g0294781 RchiOBHm_Chr6g0294791
rosa_laevigata	RLG00000011840 RLG00000011841 RLG00000011842 RLG00000011853
rosa_multiflora	Rmu_sc0001331.1_g000005 Rmu_sc0001331.1_g000006 Rmu_sc0006264.1_g000009
rosa_roxburghii	Rroxscaffold_7G00173010 Rroxscaffold_7G00173020 Rroxscaffold_7G00173030 Rroxscaffold_7G00173150
rosa_rugosa	Rorug06G0246400 Rorug06G0246900 Rorug06G0246900 Rorug06G0246900
rosa_samantha	Rh6AG358800 Rh6AG360300 Rh6AG360400 Rh6BG366000 Rh6BG366900 Rh6BG367000 Rh6BG367100 Rh6CG372600 Rh6CG372800 Rh6CG374000 Rh6CG374100 Rh6DG359400 Rh6DG359700 Rh6DG360600 Rh6DG360700
rosa_wichuraiana	Rw6G031310 Rw6G031430 Rw6G031440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	227
Acc36I	ACCTGC	1 cut(s)	135
AccIII	TCCGGA	1 cut(s)	61
AciI	CCGC	1 cut(s)	333
AclWI	GGATC	1 cut(s)	72
AcsI	RAATTY	2 cut(s)	196, 367
AfaI	GTAC	1 cut(s)	407
AgsI	TTSAA	2 cut(s)	160, 289
AhdI	GACNNNNNGTC	1 cut(s)	79
AluBI	AGCT	2 cut(s)	434, 452
AluI	AGCT	2 cut(s)	434, 452
AlwI	GGATC	1 cut(s)	72
Aor13HI	TCCGGA	1 cut(s)	61
ApeKI	GCWGC	1 cut(s)	166
ApoI	RAATTY	2 cut(s)	196, 367
AspLEI	GCGC	2 cut(s)	228, 378
AspS9I	GGNCC	1 cut(s)	59
AsuHPI	GGTGA	1 cut(s)	319
AvaII	GGWCC	1 cut(s)	59
BaeGI	GKGCMC	1 cut(s)	259
BbvI	GCAGC	1 cut(s)	153
BfmI	CTRYAG	2 cut(s)	128, 336
BfuAI	ACCTGC	1 cut(s)	135
BisI	GCNGC	1 cut(s)	167
BlsI	GCNGC	1 cut(s)	168
BmcAI	AGTACT	1 cut(s)	407
Bme18I	GGWCC	1 cut(s)	59
BmeRI	GACNNNNNGTC	1 cut(s)	79
BmgT120I	GGNCC	1 cut(s)	59
BpmI	CTGGAG	1 cut(s)	54
BsaWI	WCCGGW	1 cut(s)	61
BseAI	TCCGGA	1 cut(s)	61
BseGI	GGATG	1 cut(s)	301
BseMII	CTCAG	1 cut(s)	183
BseSI	GKGCMC	1 cut(s)	259
BseXI	GCAGC	1 cut(s)	153
BsgI	GTGCAG	1 cut(s)	267
BsiSI	CCGG	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	259
Bsp13I	TCCGGA	1 cut(s)	61
Bsp143I	GATC	1 cut(s)	64
BspACI	CCGC	1 cut(s)	333
BspCNI	CTCAG	1 cut(s)	184
BspEI	TCCGGA	1 cut(s)	61
BspHI	TCATGA	1 cut(s)	105
BspMAI	CTGCAG	1 cut(s)	132
BspMI	ACCTGC	1 cut(s)	135
BspPI	GGATC	1 cut(s)	72
BssMI	GATC	1 cut(s)	64
Bst4CI	ACNGT	1 cut(s)	245
BstDEI	CTNAG	1 cut(s)	192
BstF5I	GGATG	1 cut(s)	301
BstHHI	GCGC	2 cut(s)	228, 378
BstKTI	GATC	1 cut(s)	67
BstMBI	GATC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	3 cut(s)	175, 254, 431
BstSFI	CTRYAG	2 cut(s)	128, 336
BstSLI	GKGCMC	1 cut(s)	259
BstV1I	GCAGC	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	301
BtsIMutI	CAGTG	1 cut(s)	241
BveI	ACCTGC	1 cut(s)	135
CciI	TCATGA	1 cut(s)	105
CfoI	GCGC	2 cut(s)	228, 378
Cfr13I	GGNCC	1 cut(s)	59
Csp6I	GTAC	1 cut(s)	406
CviAII	CATG	2 cut(s)	106, 211
CviJI	RGCY	3 cut(s)	26, 434, 452
CviKI_1	RGCY	3 cut(s)	26, 434, 452
CviQI	GTAC	1 cut(s)	406
DdeI	CTNAG	1 cut(s)	192
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
DriI	GACNNNNNGTC	1 cut(s)	79
Eam1105I	GACNNNNNGTC	1 cut(s)	79
Eco47I	GGWCC	1 cut(s)	59
FaeI	CATG	2 cut(s)	109, 214
FaiI	YATR	7 cut(s)	107, 119, 141, 183, 185, 212, 338
FatI	CATG	2 cut(s)	105, 210
FauNDI	CATATG	1 cut(s)	183
Fnu4HI	GCNGC	1 cut(s)	167
FokI	GGATG	1 cut(s)	308
Fsp4HI	GCNGC	1 cut(s)	167
FspI	TGCGCA	1 cut(s)	227
GlaI	GCGC	2 cut(s)	227, 377
GluI	GCNGC	1 cut(s)	167
GsuI	CTGGAG	1 cut(s)	54
HapII	CCGG	1 cut(s)	62
HhaI	GCGC	2 cut(s)	228, 378
Hin1II	CATG	2 cut(s)	109, 214
Hin6I	GCGC	2 cut(s)	226, 376
HinP1I	GCGC	2 cut(s)	226, 376
HindIII	AAGCTT	1 cut(s)	450
HinfI	GANTC	1 cut(s)	43
HpaII	CCGG	1 cut(s)	62
HphI	GGTGA	1 cut(s)	319
Hpy166II	GTNNAC	1 cut(s)	236
Hpy188I	TCNGA	4 cut(s)	15, 137, 193, 430
Hpy188III	TCNNGA	3 cut(s)	62, 106, 364
Hpy8I	GTNNAC	1 cut(s)	236
HpyAV	CCTTC	2 cut(s)	16, 255
HpyCH4III	ACNGT	1 cut(s)	245
HpyCH4V	TGCA	3 cut(s)	130, 214, 248
HpyF10VI	GCNNNNNNNGC	3 cut(s)	175, 254, 431
HpyF3I	CTNAG	1 cut(s)	192
Hsp92II	CATG	2 cut(s)	109, 214
HspAI	GCGC	2 cut(s)	226, 376
Kpn2I	TCCGGA	1 cut(s)	61
Kzo9I	GATC	1 cut(s)	64
Lsp1109I	GCAGC	1 cut(s)	153
MaeIII	GTNAC	3 cut(s)	88, 202, 398
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MhlI	GDGCHC	1 cut(s)	259
MluCI	AATT	4 cut(s)	196, 215, 283, 367
MmeI	TCCRAC	3 cut(s)	77, 119, 425
MnlI	CCTC	3 cut(s)	29, 340, 436
MroI	TCCGGA	1 cut(s)	61
MseI	TTAA	1 cut(s)	454
MspI	CCGG	1 cut(s)	62
MwoI	GCNNNNNNNGC	3 cut(s)	175, 254, 431
NdeI	CATATG	1 cut(s)	183
NdeII	GATC	1 cut(s)	64
NlaIII	CATG	2 cut(s)	109, 214
NmuCI	GTSAC	2 cut(s)	202, 398
NsbI	TGCGCA	1 cut(s)	227
PagI	TCATGA	1 cut(s)	105
PfeI	GAWTC	1 cut(s)	43
PkrI	GCNGC	1 cut(s)	168
PspPI	GGNCC	1 cut(s)	59
PstI	CTGCAG	1 cut(s)	132
RsaI	GTAC	1 cut(s)	407
RsaNI	GTAC	1 cut(s)	406
SaqAI	TTAA	1 cut(s)	454
SatI	GCNGC	1 cut(s)	167
Sau3AI	GATC	1 cut(s)	64
Sau96I	GGNCC	1 cut(s)	59
ScaI	AGTACT	1 cut(s)	407
SduI	GDGCHC	1 cut(s)	259
SetI	ASST	7 cut(s)	40, 61, 129, 266, 332, 436, 454
SfcI	CTRYAG	2 cut(s)	128, 336
SinI	GGWCC	1 cut(s)	59
Sse9I	AATT	4 cut(s)	196, 215, 283, 367
SsiI	CCGC	1 cut(s)	333
TaaI	ACNGT	1 cut(s)	245
TaqI	TCGA	1 cut(s)	300
TasI	AATT	4 cut(s)	196, 215, 283, 367
TatI	WGTACW	1 cut(s)	405
TfiI	GAWTC	1 cut(s)	43
Tru1I	TTAA	1 cut(s)	454
Tru9I	TTAA	1 cut(s)	454
TscAI	CASTG	1 cut(s)	248
TseFI	GTSAC	2 cut(s)	202, 398
TseI	GCWGC	1 cut(s)	166
Tsp45I	GTSAC	2 cut(s)	202, 398
TspRI	CASTG	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	59
XapI	RAATTY	2 cut(s)	196, 367
ZrmI	AGTACT	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.