RLG00000011853

RNA recognition motif 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001927
Physical Location & Seq
Forward (+)
13328079 .. 13329666
1588 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011853

Sequence Viewer

Length: 867 bp
ATGTCCTCAAAATCTCTCAACCCAAATGCCAAACCCTTCTTCCACTTTCCGTCCATCACGTACACTAAACCCCTCAACCCTAATGCCAACCCATTTCACATTCAGACTTATCTCTGCAACCCTTCTTGGCAGTGGCGACCATTTATCCCAAAAACTCGTAACAAATTAACAATGGATAATCTTCCAAGAGTGAGACAGTTTTCCCGTACTATGACCCATAATATTCCAGTCAGGCGTAAGCATCATGTCGTCTCCGGTCCTTCCGTTCATGTATGGAAAGCCAAGACTGAAGAGCACAAGGATCAGAGGAACGACAAAATATTGGAGAAGAAGAGGAGCAGCAAAGGGAAAGTCATTCCTTTTCCTTTATGTTCATCTGGCCAGAAACCATTTTGCACCACAGTGATGATCAAGAATATTCCCAATCAGTTCCGGAGGACAAATTTGCTGACCATATTGAGAAGCCACTGCAAGGAGGAAAACAAAAAGTCCGAGTACAAATCTGAGTTCGATTTTGTGTATTTGCCAATGGATTTCCAGCAATACTGGGAGAAGAAGAGGGTTGTAAATCTGGGTTATGCCTTTGTCAACTTCACCAGTTACGTTGCTGCTTTGAGGTTCTTTCAATACTACCACAACCGACAATGGAATGTGAAGCTTAACAACAAAATTTGTCAAGTTACCTGCGCCAAAATCCAGGGAAAGGAAGCTCTTATGCGGCAATTTGAGAACAGTGTATTCTGGTGCCACACCGATATGTACTTGCCTGTGGTTTTGGAACCAGCCTGTGATGGTGAGCTTCTGCCCGACCTCATCAACGTTGGACGCCGTGTTTGTGCACCTTCGAGGAAACCCAGGACAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_2

Protein Analysis

289

Amino Acids

34.03

Weight (kDa)

9.98

Isoelectric Point (pI)

54.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_2 PF04059 133 - 242 8.5e-19 RNA recognition motif 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 692
AccB1I GGYRCC 1 cut(s) 744
AccIII TCCGGA 1 cut(s) 432
AciI CCGC 1 cut(s) 718
AclI AACGTT 1 cut(s) 819
AclWI GGATC 1 cut(s) 309
AcoI YGGCCR 1 cut(s) 379
AcsI RAATTY 2 cut(s) 442, 669
AcuI CTGAAG 1 cut(s) 309
AcyI GRCGYC 1 cut(s) 826
AfaI GTAC 4 cut(s) 62, 208, 497, 761
AfiI CCNNNNNNNGG 2 cut(s) 472, 703
AgsI TTSAA 1 cut(s) 626
AjnI CCWGG 2 cut(s) 696, 854
AjuI GAANNNNNNNTTGG 2 cut(s) 23, 55
AleI CACNNNNGTG 1 cut(s) 401
AluBI AGCT 3 cut(s) 658, 710, 799
AluI AGCT 3 cut(s) 658, 710, 799
Alw21I GWGCWC 2 cut(s) 297, 841
Alw26I GTCTC 2 cut(s) 187, 256
Alw44I GTGCAC 1 cut(s) 837
AlwI GGATC 1 cut(s) 309
Aor13HI TCCGGA 1 cut(s) 432
AoxI GGCC 1 cut(s) 379
ApaLI GTGCAC 1 cut(s) 837
ApeKI GCWGC 2 cut(s) 339, 608
ApoI RAATTY 2 cut(s) 442, 669
ArsI GACNNNNNNTTYG 4 cut(s) 336, 368, 816, 848
AspLEI GCGC 1 cut(s) 689
AspS9I GGNCC 1 cut(s) 257
AsuHPI GGTGA 2 cut(s) 586, 806
AvaII GGWCC 1 cut(s) 257
BaeGI GKGCMC 1 cut(s) 841
BalI TGGCCA 1 cut(s) 381
BanI GGYRCC 1 cut(s) 744
Bbv12I GWGCWC 2 cut(s) 297, 841
BbvI GCAGC 2 cut(s) 351, 595
BccI CCATC 2 cut(s) 62, 785
BceAI ACGGC 1 cut(s) 813
BciT130I CCWGG 2 cut(s) 698, 856
BclI TGATCA 1 cut(s) 408
BcoDI GTCTC 2 cut(s) 187, 256
BfuAI ACCTGC 1 cut(s) 692
BisI GCNGC 3 cut(s) 340, 609, 719
BlsI GCNGC 3 cut(s) 341, 610, 720
Bme1390I CCNGG 2 cut(s) 698, 856
Bme18I GGWCC 1 cut(s) 257
BmgT120I GGNCC 1 cut(s) 257
BmiI GGNNCC 2 cut(s) 746, 780
BmrFI CCNGG 2 cut(s) 698, 856
BmrI ACTGGG 1 cut(s) 556
BmsI GCATC 1 cut(s) 250
BmuI ACTGGG 1 cut(s) 556
BsaAI YACGTR 1 cut(s) 60
BsaHI GRCGYC 1 cut(s) 826
BsaJI CCNNGG 2 cut(s) 697, 854
BsaWI WCCGGW 2 cut(s) 254, 432
Bsc4I CCNNNNNNNGG 2 cut(s) 472, 703
Bse1I ACTGG 3 cut(s) 227, 551, 597
BseAI TCCGGA 1 cut(s) 432
BseBI CCWGG 2 cut(s) 698, 856
BseDI CCNNGG 2 cut(s) 697, 854
BseLI CCNNNNNNNGG 2 cut(s) 472, 703
BseMII CTCAG 1 cut(s) 495
BseNI ACTGG 3 cut(s) 227, 551, 597
BseRI GAGGAG 1 cut(s) 349
BseSI GKGCMC 1 cut(s) 841
BseXI GCAGC 2 cut(s) 351, 595
BshFI GGCC 1 cut(s) 381
BshNI GGYRCC 1 cut(s) 744
BsiHKAI GWGCWC 2 cut(s) 297, 841
BsiSI CCGG 2 cut(s) 255, 433
BslI CCNNNNNNNGG 2 cut(s) 472, 703
BsmAI GTCTC 2 cut(s) 187, 256
BsmBI CGTCTC 1 cut(s) 256
BsnI GGCC 1 cut(s) 381
Bsp1286I GDGCHC 2 cut(s) 297, 841
Bsp13I TCCGGA 1 cut(s) 432
Bsp143I GATC 2 cut(s) 301, 408
BspACI CCGC 1 cut(s) 718
BspANI GGCC 1 cut(s) 381
BspCNI CTCAG 1 cut(s) 496
BspEI TCCGGA 1 cut(s) 432
BspLI GGNNCC 2 cut(s) 746, 780
BspMI ACCTGC 1 cut(s) 692
BspPI GGATC 1 cut(s) 309
BspQI GCTCTTC 1 cut(s) 285
BspT107I GGYRCC 1 cut(s) 744
BsrI ACTGG 3 cut(s) 227, 551, 597
BssECI CCNNGG 2 cut(s) 697, 854
BssMI GATC 2 cut(s) 301, 408
BssNI GRCGYC 1 cut(s) 826
Bst2UI CCWGG 2 cut(s) 698, 856
Bst4CI ACNGT 3 cut(s) 198, 403, 734
Bst6I CTCTTC 3 cut(s) 285, 326, 551
BstACI GRCGYC 1 cut(s) 826
BstBAI YACGTR 1 cut(s) 60
BstDEI CTNAG 1 cut(s) 504
BstHHI GCGC 1 cut(s) 689
BstKTI GATC 2 cut(s) 304, 411
BstMAI GTCTC 2 cut(s) 187, 256
BstMBI GATC 2 cut(s) 301, 408
BstNI CCWGG 2 cut(s) 698, 856
BstSCI CCNGG 2 cut(s) 696, 854
BstSLI GKGCMC 1 cut(s) 841
BstV1I GCAGC 2 cut(s) 351, 595
BsuRI GGCC 1 cut(s) 381
BtsI GCAGTG 2 cut(s) 137, 466
BtsIMutI CAGTG 4 cut(s) 137, 408, 466, 739
BveI ACCTGC 1 cut(s) 692
CfoI GCGC 1 cut(s) 689
Cfr13I GGNCC 1 cut(s) 257
CseI GACGC 1 cut(s) 834
Csp6I GTAC 4 cut(s) 61, 207, 496, 760
CviAII CATG 2 cut(s) 245, 269
CviJI RGCY 7 cut(s) 281, 381, 465, 658, 710, 785, 799
CviKI_1 RGCY 7 cut(s) 281, 381, 465, 658, 710, 785, 799
CviQI GTAC 4 cut(s) 61, 207, 496, 760
DdeI CTNAG 1 cut(s) 504
DpnI GATC 2 cut(s) 303, 410
DpnII GATC 2 cut(s) 301, 408
EaeI YGGCCR 1 cut(s) 379
Eam1104I CTCTTC 3 cut(s) 285, 326, 551
EarI CTCTTC 3 cut(s) 285, 326, 551
Eco47I GGWCC 1 cut(s) 257
Eco57I CTGAAG 1 cut(s) 309
EcoRII CCWGG 2 cut(s) 696, 854
Esp3I CGTCTC 1 cut(s) 256
FaeI CATG 2 cut(s) 248, 272
FatI CATG 2 cut(s) 244, 268
FbaI TGATCA 1 cut(s) 408
Fnu4HI GCNGC 3 cut(s) 340, 609, 719
Fsp4HI GCNGC 3 cut(s) 340, 609, 719
GlaI GCGC 1 cut(s) 688
GluI GCNGC 3 cut(s) 340, 609, 719
HaeIII GGCC 1 cut(s) 381
HapII CCGG 2 cut(s) 255, 433
HgaI GACGC 1 cut(s) 834
HhaI GCGC 1 cut(s) 689
Hin1I GRCGYC 1 cut(s) 826
Hin1II CATG 2 cut(s) 248, 272
Hin6I GCGC 1 cut(s) 687
HinP1I GCGC 1 cut(s) 687
HincII GTYRAC 1 cut(s) 589
HindII GTYRAC 1 cut(s) 589
HindIII AAGCTT 1 cut(s) 656
HpaII CCGG 2 cut(s) 255, 433
HphI GGTGA 2 cut(s) 586, 806
Hpy166II GTNNAC 3 cut(s) 63, 589, 839
Hpy188I TCNGA 4 cut(s) 105, 306, 493, 505
Hpy188III TCNNGA 2 cut(s) 412, 433
Hpy8I GTNNAC 3 cut(s) 63, 589, 839
HpyAV CCTTC 4 cut(s) 46, 132, 270, 852
HpyCH4III ACNGT 3 cut(s) 198, 403, 734
HpyCH4IV ACGT 3 cut(s) 59, 603, 819
HpyCH4V TGCA 4 cut(s) 117, 396, 471, 839
HpyF3I CTNAG 1 cut(s) 504
HpySE526I ACGT 3 cut(s) 59, 603, 819
Hsp92I GRCGYC 1 cut(s) 826
Hsp92II CATG 2 cut(s) 248, 272
HspAI GCGC 1 cut(s) 687
Kpn2I TCCGGA 1 cut(s) 432
Ksp22I TGATCA 1 cut(s) 408
Kzo9I GATC 2 cut(s) 301, 408
LguI GCTCTTC 1 cut(s) 285
LmnI GCTCC 1 cut(s) 336
Lsp1109I GCAGC 2 cut(s) 351, 595
LweI GCATC 1 cut(s) 250
MaeII ACGT 3 cut(s) 59, 603, 819
MaeIII GTNAC 3 cut(s) 158, 599, 679
MalI GATC 2 cut(s) 303, 410
MboI GATC 2 cut(s) 301, 408
MboII GAAGA 7 cut(s) 31, 173, 302, 340, 343, 565, 568
MhlI GDGCHC 2 cut(s) 297, 841
MlsI TGGCCA 1 cut(s) 381
MluCI AATT 4 cut(s) 164, 442, 669, 722
MluNI TGGCCA 1 cut(s) 381
MmeI TCCRAC 1 cut(s) 802
Mox20I TGGCCA 1 cut(s) 381
MroI TCCGGA 1 cut(s) 432
MscI TGGCCA 1 cut(s) 381
MseI TTAA 2 cut(s) 167, 660
MslI CAYNNNNRTG 3 cut(s) 401, 404, 755
Msp20I TGGCCA 1 cut(s) 381
MspI CCGG 2 cut(s) 255, 433
MspR9I CCNGG 2 cut(s) 698, 856
MvaI CCWGG 2 cut(s) 698, 856
NdeII GATC 2 cut(s) 301, 408
NlaIII CATG 2 cut(s) 248, 272
NlaIV GGNNCC 2 cut(s) 746, 780
OliI CACNNNNGTG 1 cut(s) 401
PciSI GCTCTTC 1 cut(s) 285
PkrI GCNGC 3 cut(s) 341, 610, 720
Ppu21I YACGTR 1 cut(s) 60
Psp1406I AACGTT 1 cut(s) 819
Psp6I CCWGG 2 cut(s) 696, 854
PspGI CCWGG 2 cut(s) 696, 854
PspN4I GGNNCC 2 cut(s) 746, 780
PspPI GGNCC 1 cut(s) 257
RsaI GTAC 4 cut(s) 62, 208, 497, 761
RsaNI GTAC 4 cut(s) 61, 207, 496, 760
RseI CAYNNNNRTG 3 cut(s) 401, 404, 755
SapI GCTCTTC 1 cut(s) 285
SaqAI TTAA 2 cut(s) 167, 660
SatI GCNGC 3 cut(s) 340, 609, 719
Sau3AI GATC 2 cut(s) 301, 408
Sau96I GGNCC 1 cut(s) 257
ScrFI CCNGG 2 cut(s) 698, 856
SduI GDGCHC 2 cut(s) 297, 841
SfaNI GCATC 1 cut(s) 250
SinI GGWCC 1 cut(s) 257
SmiMI CAYNNNNRTG 3 cut(s) 401, 404, 755
Sse9I AATT 4 cut(s) 164, 442, 669, 722
SsiI CCGC 1 cut(s) 718
SspI AATATT 3 cut(s) 223, 321, 418
StyD4I CCNGG 2 cut(s) 696, 854
TaaI ACNGT 3 cut(s) 198, 403, 734
TaiI ACGT 3 cut(s) 62, 606, 822
TaqI TCGA 2 cut(s) 510, 845
TasI AATT 4 cut(s) 164, 442, 669, 722
TatI WGTACW 2 cut(s) 495, 759
TauI GCSGC 1 cut(s) 721
Tru1I TTAA 2 cut(s) 167, 660
Tru9I TTAA 2 cut(s) 167, 660
TscAI CASTG 4 cut(s) 137, 408, 473, 739
TseI GCWGC 2 cut(s) 339, 608
TspDTI ATGAA 2 cut(s) 257, 363
TspGWI ACGGA 2 cut(s) 39, 253
TspRI CASTG 4 cut(s) 137, 408, 473, 739
VneI GTGCAC 1 cut(s) 837
VpaK11BI GGWCC 1 cut(s) 257
XapI RAATTY 2 cut(s) 442, 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.