Rh6BG367000

RNA recognition motif 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001927
Physical Location & Seq
Reverse (-)
59649977 .. 59651241
1265 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG367000.1

Sequence Viewer

Length: 885 bp
ATGTCTCGCAGACCTCTAAACCCATATGCGCAACCCTATTTTGCTCACCATTTCCATCCCAATCAAAGCTCTCTCTGTGAAGTCCCAACATGTGAAGCTACTGCCACGGATCAAAACCCTAGAGTTGTTGTTCCTAGGAGAAAGAGAAACAACTTCAGGCTCGAGAGGAACGCGGGGCCTAGGTTGAGGTCTTCACAAACAAGCTTGGCCGAAAGCCCAAATCATAAAGCTTCAAACTTTGCATCAACCAGTAACTGCGGTGGTGCTGTAGTTCCCTGTTCTTCAAGGCCTGAAAGGAAAAACAATAGGGGAAGGAATCTAGCTCCGAGGTTGAGTCTTGGCCCAAGTCATGGGATTCAAGCATCTAGCTTTGCCAATGGGAAGGGTTCTGTGATTCCTTTTCCTGAAAGTCCAGACGAGCAAAATGGGTCTGAGGTTACTACTGTAAGTCTAAGGAGCGATTTGCTGCTCAAATTGAAAGAGCATTGCCGAGAGGAGAACAAAAAGGCTGATTCTTTGCACAAATCGGAGTTCAATTTCTTCTATTTACCACTGGATTTCAAAAAATTTTGGGAGAAGAAGAAGATTGCAAATCTTGGCTACGGTTTCGTGAATTTCACCACTGCTGTTGGAGCACTAGGTTTCTATGAGAAATACCACAAGACTATGTGGAAGGAGGTCATTCAGAGCACCAAAATCTGTGAGATAACTTGCGCCAAGATCCAGGGTTTTGAGGCACTGAGGAAAAGTTTTAGACGCAAAATATATCATGGTCTCACAAACGATTTTTTGCCTGTGATCTTGGCTCCTGCATGTGATGGAGTGAGGGAGTCCAACCACATACCTGTAGGACGACTTTTGGGTGCAGCGGAGATTGAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_2

Protein Analysis

294

Amino Acids

32.99

Weight (kDa)

9.63

Isoelectric Point (pI)

52.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_2 PF04059 169 - 252 4.6e-11 RNA recognition motif 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 30
AccB7I CCANNNNNTGG 1 cut(s) 350
AccII CGCG 1 cut(s) 173
AciI CCGC 3 cut(s) 173, 258, 869
AclWI GGATC 2 cut(s) 117, 715
AcoI YGGCCR 1 cut(s) 207
AcsI RAATTY 2 cut(s) 566, 613
AcuI CTGAAG 1 cut(s) 139
AfiI CCNNNNNNNGG 1 cut(s) 350
AflIII ACRYGT 1 cut(s) 89
AgsI TTSAA 7 cut(s) 234, 285, 359, 478, 535, 562, 878
AjnI CCWGG 1 cut(s) 723
AluBI AGCT 6 cut(s) 69, 98, 204, 230, 323, 369
AluI AGCT 6 cut(s) 69, 98, 204, 230, 323, 369
Alw21I GWGCWC 2 cut(s) 637, 692
Alw26I GTCTC 2 cut(s) 9, 779
AlwI GGATC 2 cut(s) 117, 715
AlwNI CAGNNNCTG 1 cut(s) 255
Ama87I CYCGRG 1 cut(s) 161
AoxI GGCC 4 cut(s) 176, 207, 287, 340
ApeKI GCWGC 2 cut(s) 466, 866
ApoI RAATTY 2 cut(s) 566, 613
AspA2I CCTAGG 2 cut(s) 134, 179
AspLEI GCGC 2 cut(s) 31, 716
AspS9I GGNCC 2 cut(s) 176, 341
AsuHPI GGTGA 2 cut(s) 38, 610
AvaI CYCGRG 1 cut(s) 161
AvrII CCTAGG 2 cut(s) 134, 179
BbsI GAAGAC 1 cut(s) 183
Bbv12I GWGCWC 2 cut(s) 637, 692
BbvI GCAGC 2 cut(s) 453, 878
BccI CCATC 2 cut(s) 63, 812
BciT130I CCWGG 1 cut(s) 725
BcoDI GTCTC 2 cut(s) 9, 779
BfaI CTAG 6 cut(s) 120, 135, 180, 320, 366, 638
BfmI CTRYAG 2 cut(s) 267, 846
BisI GCNGC 2 cut(s) 467, 867
BlnI CCTAGG 2 cut(s) 134, 179
BlsI GCNGC 2 cut(s) 468, 868
Bme1390I CCNGG 1 cut(s) 725
BmeT110I CYCGRG 1 cut(s) 161
BmgT120I GGNCC 2 cut(s) 176, 341
BmiI GGNNCC 2 cut(s) 177, 807
BmrFI CCNGG 1 cut(s) 725
BmsI GCATC 2 cut(s) 251, 371
BpiI GAAGAC 1 cut(s) 183
BsaI GGTCTC 1 cut(s) 779
BsaJI CCNNGG 5 cut(s) 105, 134, 179, 326, 724
Bsc4I CCNNNNNNNGG 1 cut(s) 350
Bse1I ACTGG 2 cut(s) 249, 558
Bse3DI GCAATG 1 cut(s) 484
BseBI CCWGG 1 cut(s) 725
BseDI CCNNGG 5 cut(s) 105, 134, 179, 326, 724
BseGI GGATG 1 cut(s) 55
BseLI CCNNNNNNNGG 1 cut(s) 350
BseMI GCAATG 1 cut(s) 484
BseMII CTCAG 2 cut(s) 423, 731
BseNI ACTGG 2 cut(s) 249, 558
BseRI GAGGAG 1 cut(s) 509
BseXI GCAGC 2 cut(s) 453, 878
BsgI GTGCAG 1 cut(s) 885
Bsh1236I CGCG 1 cut(s) 173
BshFI GGCC 4 cut(s) 178, 209, 289, 342
BsiHKAI GWGCWC 2 cut(s) 637, 692
BsiHKCI CYCGRG 1 cut(s) 161
BslFI GGGAC 1 cut(s) 68
BslI CCNNNNNNNGG 1 cut(s) 350
BsmAI GTCTC 2 cut(s) 9, 779
BsmFI GGGAC 1 cut(s) 68
BsnI GGCC 4 cut(s) 178, 209, 289, 342
Bso31I GGTCTC 1 cut(s) 779
BsoBI CYCGRG 1 cut(s) 161
Bsp1286I GDGCHC 2 cut(s) 637, 692
Bsp143I GATC 3 cut(s) 109, 720, 798
BspACI CCGC 3 cut(s) 173, 258, 869
BspANI GGCC 4 cut(s) 178, 209, 289, 342
BspCNI CTCAG 2 cut(s) 424, 732
BspFNI CGCG 1 cut(s) 173
BspLI GGNNCC 2 cut(s) 177, 807
BspPI GGATC 2 cut(s) 117, 715
BspTNI GGTCTC 1 cut(s) 779
BsrDI GCAATG 1 cut(s) 484
BsrI ACTGG 2 cut(s) 249, 558
BssECI CCNNGG 5 cut(s) 105, 134, 179, 326, 724
BssMI GATC 3 cut(s) 109, 720, 798
BssT1I CCWWGG 2 cut(s) 134, 179
Bst2UI CCWGG 1 cut(s) 725
Bst4CI ACNGT 2 cut(s) 445, 605
BstDEI CTNAG 3 cut(s) 432, 452, 740
BstDSI CCRYGG 1 cut(s) 105
BstF5I GGATG 1 cut(s) 55
BstFNI CGCG 1 cut(s) 173
BstHHI GCGC 2 cut(s) 31, 716
BstKTI GATC 3 cut(s) 112, 723, 801
BstMAI GTCTC 2 cut(s) 9, 779
BstMBI GATC 3 cut(s) 109, 720, 798
BstMWI GCNNNNNNNGC 1 cut(s) 632
BstNI CCWGG 1 cut(s) 725
BstNSI RCATGY 2 cut(s) 93, 816
BstSCI CCNGG 1 cut(s) 723
BstSFI CTRYAG 2 cut(s) 267, 846
BstUI CGCG 1 cut(s) 173
BstV1I GCAGC 2 cut(s) 453, 878
BstV2I GAAGAC 1 cut(s) 183
BstX2I RGATCY 1 cut(s) 720
BstYI RGATCY 1 cut(s) 720
BsuRI GGCC 4 cut(s) 178, 209, 289, 342
BtgI CCRYGG 1 cut(s) 105
BtsCI GGATG 1 cut(s) 55
BtsI GCAGTG 1 cut(s) 621
BtsIMutI CAGTG 3 cut(s) 551, 621, 737
CaiI CAGNNNCTG 1 cut(s) 255
CfoI GCGC 2 cut(s) 31, 716
Cfr13I GGNCC 2 cut(s) 176, 341
CseI GACGC 1 cut(s) 765
CspCI CAANNNNNGTGG 2 cut(s) 610, 645
CviAII CATG 4 cut(s) 90, 350, 770, 813
DdeI CTNAG 3 cut(s) 432, 452, 740
DpnI GATC 3 cut(s) 111, 722, 800
DpnII GATC 3 cut(s) 109, 720, 798
EaeI YGGCCR 1 cut(s) 207
Eco130I CCWWGG 2 cut(s) 134, 179
Eco147I AGGCCT 1 cut(s) 289
Eco31I GGTCTC 1 cut(s) 779
Eco57I CTGAAG 1 cut(s) 139
Eco88I CYCGRG 1 cut(s) 161
EcoO109I RGGNCCY 1 cut(s) 176
EcoRII CCWGG 1 cut(s) 723
EcoT14I CCWWGG 2 cut(s) 134, 179
ErhI CCWWGG 2 cut(s) 134, 179
FaeI CATG 4 cut(s) 93, 353, 773, 816
FaqI GGGAC 1 cut(s) 68
FatI CATG 4 cut(s) 89, 349, 769, 812
FauI CCCGC 1 cut(s) 166
FauNDI CATATG 1 cut(s) 25
Fnu4HI GCNGC 2 cut(s) 467, 867
FokI GGATG 1 cut(s) 42
Fsp4HI GCNGC 2 cut(s) 467, 867
FspBI CTAG 6 cut(s) 120, 135, 180, 320, 366, 638
FspI TGCGCA 1 cut(s) 30
GlaI GCGC 2 cut(s) 30, 715
GluI GCNGC 2 cut(s) 467, 867
HaeIII GGCC 4 cut(s) 178, 209, 289, 342
HgaI GACGC 1 cut(s) 765
HhaI GCGC 2 cut(s) 31, 716
Hin1II CATG 4 cut(s) 93, 353, 773, 816
Hin6I GCGC 2 cut(s) 29, 714
HinP1I GCGC 2 cut(s) 29, 714
HindIII AAGCTT 2 cut(s) 202, 228
HinfI GANTC 6 cut(s) 316, 334, 355, 394, 512, 830
HphI GGTGA 2 cut(s) 38, 610
Hpy188I TCNGA 4 cut(s) 327, 433, 529, 687
Hpy188III TCNNGA 4 cut(s) 163, 404, 413, 610
HpyAV CCTTC 3 cut(s) 306, 376, 667
HpyCH4III ACNGT 2 cut(s) 445, 605
HpyCH4V TGCA 5 cut(s) 242, 520, 590, 812, 866
HpyF10VI GCNNNNNNNGC 1 cut(s) 632
HpyF3I CTNAG 3 cut(s) 432, 452, 740
Hsp92II CATG 4 cut(s) 93, 353, 773, 816
HspAI GCGC 2 cut(s) 29, 714
Kzo9I GATC 3 cut(s) 109, 720, 798
LmnI GCTCC 4 cut(s) 328, 456, 632, 811
Lsp1109I GCAGC 2 cut(s) 453, 878
LweI GCATC 2 cut(s) 251, 371
MaeI CTAG 6 cut(s) 120, 135, 180, 320, 366, 638
MaeIII GTNAC 2 cut(s) 251, 436
MalI GATC 3 cut(s) 111, 722, 800
MboI GATC 3 cut(s) 109, 720, 798
MboII GAAGA 6 cut(s) 183, 273, 532, 589, 592, 595
MflI RGATCY 1 cut(s) 720
MhlI GDGCHC 2 cut(s) 637, 692
MluCI AATT 4 cut(s) 473, 535, 566, 613
MlyI GAGTC 2 cut(s) 343, 839
MmeI TCCRAC 2 cut(s) 610, 858
MspA1I CMGCKG 1 cut(s) 869
MspR9I CCNGG 1 cut(s) 725
MvaI CCWGG 1 cut(s) 725
MvnI CGCG 1 cut(s) 173
MwoI GCNNNNNNNGC 1 cut(s) 632
NdeI CATATG 1 cut(s) 25
NdeII GATC 3 cut(s) 109, 720, 798
NlaIII CATG 4 cut(s) 93, 353, 773, 816
NlaIV GGNNCC 2 cut(s) 177, 807
NmeAIII GCCGAG 1 cut(s) 515
NsbI TGCGCA 1 cut(s) 30
NspI RCATGY 2 cut(s) 93, 816
PaeR7I CTCGAG 1 cut(s) 161
PceI AGGCCT 1 cut(s) 289
PciI ACATGT 1 cut(s) 89
PfeI GAWTC 4 cut(s) 316, 355, 394, 512
PflMI CCANNNNNTGG 1 cut(s) 350
PkrI GCNGC 2 cut(s) 468, 868
PleI GAGTC 2 cut(s) 342, 838
PpsI GAGTC 2 cut(s) 342, 838
PscI ACATGT 1 cut(s) 89
Psp6I CCWGG 1 cut(s) 723
PspGI CCWGG 1 cut(s) 723
PspN4I GGNNCC 2 cut(s) 177, 807
PspPI GGNCC 2 cut(s) 176, 341
PstNI CAGNNNCTG 1 cut(s) 255
PsuI RGATCY 1 cut(s) 720
SatI GCNGC 2 cut(s) 467, 867
Sau3AI GATC 3 cut(s) 109, 720, 798
Sau96I GGNCC 2 cut(s) 176, 341
SchI GAGTC 2 cut(s) 343, 839
ScrFI CCNGG 1 cut(s) 725
SduI GDGCHC 2 cut(s) 637, 692
SfaNI GCATC 2 cut(s) 251, 371
SfcI CTRYAG 2 cut(s) 267, 846
Sfr274I CTCGAG 1 cut(s) 161
SlaI CTCGAG 1 cut(s) 161
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
Sse9I AATT 4 cut(s) 473, 535, 566, 613
SseBI AGGCCT 1 cut(s) 289
SsiI CCGC 3 cut(s) 173, 258, 869
SspMI CTAG 6 cut(s) 120, 135, 180, 320, 366, 638
StuI AGGCCT 1 cut(s) 289
StyD4I CCNGG 1 cut(s) 723
StyI CCWWGG 2 cut(s) 134, 179
TaaI ACNGT 2 cut(s) 445, 605
TaqI TCGA 1 cut(s) 162
TasI AATT 4 cut(s) 473, 535, 566, 613
TfiI GAWTC 4 cut(s) 316, 355, 394, 512
TscAI CASTG 3 cut(s) 558, 628, 744
TseI GCWGC 2 cut(s) 466, 866
TspGWI ACGGA 1 cut(s) 122
TspRI CASTG 3 cut(s) 558, 628, 744
Van91I CCANNNNNTGG 1 cut(s) 350
XapI RAATTY 2 cut(s) 566, 613
XceI RCATGY 2 cut(s) 93, 816
XhoI CTCGAG 1 cut(s) 161
XmaJI CCTAGG 2 cut(s) 134, 179
XspI CTAG 6 cut(s) 120, 135, 180, 320, 366, 638
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.