RchiOBHm_Chr6g0294781

RNA recognition motif 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001927
Physical Location & Seq
Reverse (-)
56972774 .. 56973922
1149 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26458

Sequence Viewer

Length: 609 bp
ATGAGACGACTTCGAAAAAGGAACGGTCGAAAAAGGAACATTGGTGCTTTGAGTCGTGGTGCTACTGGGGAGGGAGGTGTAATTCCATTTCCTTCAGGTCCGGATCAGCAGCAAAATGGGTCGTCAGCTACTACAACTATCATGATAAAGAATATCCCAAACCAGTTCAGGAGTGATCTACTGGATATATTGACGGAGCATTGCTTGGTAGAAAACCTAGATGCTGTGGTGCGGTCTGATCCTAACAAGTCCGAGTTTGATTTTGTGTATTTGCCCATGGATTTCAACAAAAATAGGGGTAGCAATTTGGGTTACGCATTTGTAAACTTCACCGGTGCAATTGGGGCACAAAGATTCTACCAGCGTTACCACAATTTCGAGTGGGATGTTGAACAGAACAAAAAAACATGTGCAATTACCTGCGCTAAAATTCAGGGAAAGAAAGCACTAATCGGGAATTTTAGGCGCAAAGTATTCCGGTGCGAGTGTGACGAGTACTTGCCTGTGGTTGTCGCACCTCCATGCGATGGTGTGTCGCCTCCGAAGCTCACACCTCTTGGAAAGCTTAGGGGTGCACCCAAGTACCCCACCAGTAGATTAAGAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_2

Protein Analysis

202

Amino Acids

22.7

Weight (kDa)

9.8

Isoelectric Point (pI)

49.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_2 PF04059 45 - 155 4.9e-18 RNA recognition motif 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 428
AccB7I CCANNNNNTGG 1 cut(s) 527
AccIII TCCGGA 1 cut(s) 100
AciI CCGC 1 cut(s) 232
AclWI GGATC 2 cut(s) 111, 233
AcsI RAATTY 2 cut(s) 429, 457
AcuI CTGAAG 1 cut(s) 78
AfaI GTAC 2 cut(s) 497, 584
AfiI CCNNNNNNNGG 1 cut(s) 527
AflIII ACRYGT 1 cut(s) 407
AgeI ACCGGT 1 cut(s) 332
AgsI TTSAA 2 cut(s) 286, 392
AluBI AGCT 3 cut(s) 128, 547, 565
AluI AGCT 3 cut(s) 128, 547, 565
Alw21I GWGCWC 1 cut(s) 577
Alw44I GTGCAC 1 cut(s) 573
AlwI GGATC 2 cut(s) 111, 233
Aor13HI TCCGGA 1 cut(s) 100
ApaLI GTGCAC 1 cut(s) 573
ApeKI GCWGC 1 cut(s) 109
ApoI RAATTY 2 cut(s) 429, 457
AsiGI ACCGGT 1 cut(s) 332
AspLEI GCGC 2 cut(s) 425, 468
AspS9I GGNCC 1 cut(s) 98
AsuHPI GGTGA 1 cut(s) 322
AsuII TTCGAA 1 cut(s) 13
AvaII GGWCC 1 cut(s) 98
BaeGI GKGCMC 2 cut(s) 349, 577
BaeI ACNNNNGTAYC 2 cut(s) 566, 599
Bbv12I GWGCWC 1 cut(s) 577
BbvI GCAGC 1 cut(s) 121
BccI CCATC 1 cut(s) 521
BfaI CTAG 1 cut(s) 218
BfuAI ACCTGC 1 cut(s) 428
BisI GCNGC 1 cut(s) 110
BlsI GCNGC 1 cut(s) 111
BmcAI AGTACT 1 cut(s) 497
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 98
BmrI ACTGGG 1 cut(s) 75
BmsI GCATC 1 cut(s) 211
BmuI ACTGGG 1 cut(s) 75
Bpu10I CCTNAGC 1 cut(s) 566
Bpu14I TTCGAA 1 cut(s) 13
BsaJI CCNNGG 1 cut(s) 276
BsaWI WCCGGW 3 cut(s) 100, 332, 477
Bsc4I CCNNNNNNNGG 1 cut(s) 527
Bse118I RCCGGY 1 cut(s) 332
Bse1I ACTGG 4 cut(s) 70, 163, 186, 591
Bse3DI GCAATG 1 cut(s) 199
BseAI TCCGGA 1 cut(s) 100
BseDI CCNNGG 1 cut(s) 276
BseGI GGATG 1 cut(s) 391
BseLI CCNNNNNNNGG 1 cut(s) 527
BseMI GCAATG 1 cut(s) 199
BseNI ACTGG 4 cut(s) 70, 163, 186, 591
BseSI GKGCMC 2 cut(s) 349, 577
BseXI GCAGC 1 cut(s) 121
Bsh1285I CGRYCG 1 cut(s) 28
BshTI ACCGGT 1 cut(s) 332
BsiEI CGRYCG 1 cut(s) 28
BsiHKAI GWGCWC 1 cut(s) 577
BsiSI CCGG 3 cut(s) 101, 333, 478
BslI CCNNNNNNNGG 1 cut(s) 527
Bsp119I TTCGAA 1 cut(s) 13
Bsp1286I GDGCHC 2 cut(s) 349, 577
Bsp13I TCCGGA 1 cut(s) 100
Bsp143I GATC 3 cut(s) 103, 175, 238
Bsp19I CCATGG 1 cut(s) 276
BspACI CCGC 1 cut(s) 232
BspEI TCCGGA 1 cut(s) 100
BspHI TCATGA 1 cut(s) 141
BspMI ACCTGC 1 cut(s) 428
BspPI GGATC 2 cut(s) 111, 233
BspT104I TTCGAA 1 cut(s) 13
BsrDI GCAATG 1 cut(s) 199
BsrFI RCCGGY 1 cut(s) 332
BsrI ACTGG 4 cut(s) 70, 163, 186, 591
BssAI RCCGGY 1 cut(s) 332
BssECI CCNNGG 1 cut(s) 276
BssMI GATC 3 cut(s) 103, 175, 238
BssT1I CCWWGG 1 cut(s) 276
Bst4CI ACNGT 1 cut(s) 26
BstBI TTCGAA 1 cut(s) 13
BstDEI CTNAG 1 cut(s) 566
BstDSI CCRYGG 1 cut(s) 276
BstF5I GGATG 1 cut(s) 391
BstHHI GCGC 2 cut(s) 425, 468
BstKTI GATC 3 cut(s) 106, 178, 241
BstMBI GATC 3 cut(s) 103, 175, 238
BstMCI CGRYCG 1 cut(s) 28
BstMWI GCNNNNNNNGC 2 cut(s) 344, 544
BstNSI RCATGY 1 cut(s) 411
BstSLI GKGCMC 2 cut(s) 349, 577
BstV1I GCAGC 1 cut(s) 121
BtgI CCRYGG 1 cut(s) 276
BtgZI GCGATG 1 cut(s) 540
BtsCI GGATG 1 cut(s) 391
BveI ACCTGC 1 cut(s) 428
CciI TCATGA 1 cut(s) 141
CfoI GCGC 2 cut(s) 425, 468
Cfr10I RCCGGY 1 cut(s) 332
Cfr13I GGNCC 1 cut(s) 98
Csp6I GTAC 2 cut(s) 496, 583
CspAI ACCGGT 1 cut(s) 332
CviAII CATG 4 cut(s) 142, 277, 408, 522
CviJI RGCY 3 cut(s) 128, 547, 565
CviKI_1 RGCY 3 cut(s) 128, 547, 565
CviQI GTAC 2 cut(s) 496, 583
DdeI CTNAG 1 cut(s) 566
DpnI GATC 3 cut(s) 105, 177, 240
DpnII GATC 3 cut(s) 103, 175, 238
Eco130I CCWWGG 1 cut(s) 276
Eco47I GGWCC 1 cut(s) 98
Eco57I CTGAAG 1 cut(s) 78
EcoT14I CCWWGG 1 cut(s) 276
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 4 cut(s) 145, 280, 411, 525
FaiI YATR 5 cut(s) 143, 188, 278, 409, 523
FatI CATG 4 cut(s) 141, 276, 407, 521
Fnu4HI GCNGC 1 cut(s) 110
FokI GGATG 1 cut(s) 398
Fsp4HI GCNGC 1 cut(s) 110
FspBI CTAG 1 cut(s) 218
GlaI GCGC 2 cut(s) 424, 467
GluI GCNGC 1 cut(s) 110
HapII CCGG 3 cut(s) 101, 333, 478
HhaI GCGC 2 cut(s) 425, 468
Hin1II CATG 4 cut(s) 145, 280, 411, 525
Hin6I GCGC 2 cut(s) 423, 466
HinP1I GCGC 2 cut(s) 423, 466
HindIII AAGCTT 1 cut(s) 563
HinfI GANTC 3 cut(s) 52, 354, 603
HpaII CCGG 3 cut(s) 101, 333, 478
HphI GGTGA 1 cut(s) 322
Hpy166II GTNNAC 2 cut(s) 325, 575
Hpy188I TCNGA 3 cut(s) 238, 253, 543
Hpy188III TCNNGA 4 cut(s) 101, 142, 169, 454
Hpy8I GTNNAC 2 cut(s) 325, 575
HpyAV CCTTC 1 cut(s) 102
HpyCH4III ACNGT 1 cut(s) 26
HpyCH4V TGCA 3 cut(s) 338, 413, 575
HpyF10VI GCNNNNNNNGC 2 cut(s) 344, 544
HpyF3I CTNAG 1 cut(s) 566
Hsp92II CATG 4 cut(s) 145, 280, 411, 525
HspAI GCGC 2 cut(s) 423, 466
Kpn2I TCCGGA 1 cut(s) 100
Kzo9I GATC 3 cut(s) 103, 175, 238
LmnI GCTCC 1 cut(s) 196
Lsp1109I GCAGC 1 cut(s) 121
LweI GCATC 1 cut(s) 211
MaeI CTAG 1 cut(s) 218
MaeIII GTNAC 3 cut(s) 311, 365, 488
MalI GATC 3 cut(s) 105, 177, 240
MboI GATC 3 cut(s) 103, 175, 238
MfeI CAATTG 1 cut(s) 339
MhlI GDGCHC 2 cut(s) 349, 577
MluCI AATT 7 cut(s) 81, 304, 339, 373, 414, 429, 457
MlyI GAGTC 1 cut(s) 61
MnlI CCTC 5 cut(s) 64, 68, 528, 549, 564
MroI TCCGGA 1 cut(s) 100
MseI TTAA 1 cut(s) 599
MslI CAYNNNNRTG 1 cut(s) 520
MspI CCGG 3 cut(s) 101, 333, 478
MunI CAATTG 1 cut(s) 339
MwoI GCNNNNNNNGC 2 cut(s) 344, 544
NcoI CCATGG 1 cut(s) 276
NdeII GATC 3 cut(s) 103, 175, 238
NlaIII CATG 4 cut(s) 145, 280, 411, 525
NmuCI GTSAC 1 cut(s) 488
NspI RCATGY 1 cut(s) 411
NspV TTCGAA 1 cut(s) 13
PagI TCATGA 1 cut(s) 141
PciI ACATGT 1 cut(s) 407
PfeI GAWTC 2 cut(s) 354, 603
PflMI CCANNNNNTGG 1 cut(s) 527
PinAI ACCGGT 1 cut(s) 332
PkrI GCNGC 1 cut(s) 111
PleI GAGTC 1 cut(s) 60
PpsI GAGTC 1 cut(s) 60
PscI ACATGT 1 cut(s) 407
PspPI GGNCC 1 cut(s) 98
RsaI GTAC 2 cut(s) 497, 584
RsaNI GTAC 2 cut(s) 496, 583
RseI CAYNNNNRTG 1 cut(s) 520
SaqAI TTAA 1 cut(s) 599
SatI GCNGC 1 cut(s) 110
Sau3AI GATC 3 cut(s) 103, 175, 238
Sau96I GGNCC 1 cut(s) 98
ScaI AGTACT 1 cut(s) 497
SchI GAGTC 1 cut(s) 61
SduI GDGCHC 2 cut(s) 349, 577
SetI ASST 9 cut(s) 79, 100, 130, 219, 422, 520, 549, 556, 567
SfaNI GCATC 1 cut(s) 211
SfuI TTCGAA 1 cut(s) 13
SgrAI CRCCGGYG 1 cut(s) 332
SinI GGWCC 1 cut(s) 98
SmiMI CAYNNNNRTG 1 cut(s) 520
Sse9I AATT 7 cut(s) 81, 304, 339, 373, 414, 429, 457
SsiI CCGC 1 cut(s) 232
SspMI CTAG 1 cut(s) 218
StyI CCWWGG 1 cut(s) 276
TaaI ACNGT 1 cut(s) 26
TaqI TCGA 3 cut(s) 13, 28, 378
TasI AATT 7 cut(s) 81, 304, 339, 373, 414, 429, 457
TatI WGTACW 1 cut(s) 495
TfiI GAWTC 2 cut(s) 354, 603
Tru1I TTAA 1 cut(s) 599
Tru9I TTAA 1 cut(s) 599
TseFI GTSAC 1 cut(s) 488
TseI GCWGC 1 cut(s) 109
Tsp45I GTSAC 1 cut(s) 488
TspGWI ACGGA 1 cut(s) 209
Van91I CCANNNNNTGG 1 cut(s) 527
VneI GTGCAC 1 cut(s) 573
VpaK11BI GGWCC 1 cut(s) 98
XapI RAATTY 2 cut(s) 429, 457
XceI RCATGY 1 cut(s) 411
XspI CTAG 1 cut(s) 218
ZrmI AGTACT 1 cut(s) 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.