Rh6AG360400

RNA recognition motif 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001927
Physical Location & Seq
Reverse (-)
55904966 .. 55906337
1372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG360400.1

Sequence Viewer

Length: 891 bp
ATGTTTCTTCAACCTCCAAGACAACCATACTTAATCCCCCAACTATTCTTTCCCAGCCATTTTTATTACCAAAACTATGATCAAGTCCTTCAACCCTATTTCGTGAACCATTCTCAGACTCAAATCTACGTCTGTGATCCATTCATCTATCATGTCTTTCCAACATATTATTTTCAGCGGCCGCCAAACCCACCCATAAACCCTAGAGTGCTTCCTCAGCCTCGAAGAAATACTCGCCTTAAGCCAAAGAGGAACATCGCTGCTACTACTTCTGGCGTTCGGAAATGGGTGCCAAAAAGGGGAGATGAGCAAGCTTCTACCTGTATTAGGACTAGAAATGTTCGGGAGGGTTCTTCTGTAATTCCATTTCCAACAAGTCCTTATCAGCAAATAACTTCGACTACGACAACCATCATGATCAAGAACATCCCAAATCAGTTTGGGAGGAGTGATCTACTAAGTATGTTGAAAGATCATTGCTTGGATGAGAACTTAAACGCTGTGTTGCTGTCTGAAACCAAGGAAATATCCGAGTTTGATTTTCTCTACTTGCCTATGGATTTCAAGGAGTTTTGGGAAAAAGAGAGGATCTCCAACCTGGGATATGCTTTCGTAAATTTTACCTCCTCTTGTGCTGCACTCAGATTCTATAAGCAATACCACAAATTTGAGTGGCCAATGCCGAAAAACAAAAAGATATGTGAGGTTACTTGCGCCAAAACCCAGGGCAAGGAAGCTTTAACCAAGAAATTCAAGAACAAGATATTTTGGTGTCACAGCAATGAGTACTTGCCGGTGATTTTAGCACCTCCCTGTGATGGTGTTAAGAACTCCGGTCTTGTAATGGTCGGAAAACTTGCCGGGCAACCAAAGATTCTGAAGAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_2

Protein Analysis

296

Amino Acids

34.58

Weight (kDa)

9.59

Isoelectric Point (pI)

50.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_2 PF04059 136 - 252 7e-16 RNA recognition motif 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 289
AciI CCGC 2 cut(s) 178, 182
AclWI GGATC 2 cut(s) 131, 596
AcoI YGGCCR 2 cut(s) 179, 674
AcsI RAATTY 3 cut(s) 616, 665, 749
AfaI GTAC 1 cut(s) 788
AfiI CCNNNNNNNGG 4 cut(s) 299, 327, 730, 818
AflII CTTAAG 1 cut(s) 239
AgsI TTSAA 5 cut(s) 11, 92, 469, 565, 754
AjnI CCWGG 2 cut(s) 597, 723
AjuI GAANNNNNNNTTGG 2 cut(s) 33, 65
AluBI AGCT 2 cut(s) 314, 737
AluI AGCT 2 cut(s) 314, 737
AlwI GGATC 2 cut(s) 131, 596
AoxI GGCC 2 cut(s) 179, 674
ApeKI GCWGC 2 cut(s) 260, 635
ApoI RAATTY 3 cut(s) 616, 665, 749
AspLEI GCGC 1 cut(s) 716
AsuC2I CCSGG 1 cut(s) 862
AsuHPI GGTGA 1 cut(s) 808
BalI TGGCCA 1 cut(s) 676
BanI GGYRCC 1 cut(s) 289
BbvCI CCTCAGC 1 cut(s) 216
BbvI GCAGC 2 cut(s) 247, 622
BccI CCATC 2 cut(s) 419, 812
BciT130I CCWGG 2 cut(s) 599, 725
BclI TGATCA 2 cut(s) 79, 417
BcnI CCSGG 1 cut(s) 862
BfaI CTAG 2 cut(s) 204, 333
BfrI CTTAAG 1 cut(s) 239
BisI GCNGC 4 cut(s) 179, 182, 261, 636
BlsI GCNGC 4 cut(s) 180, 183, 262, 637
BmcAI AGTACT 1 cut(s) 788
Bme1390I CCNGG 3 cut(s) 599, 725, 862
BmiI GGNNCC 1 cut(s) 291
BmrFI CCNGG 3 cut(s) 599, 725, 862
BplI GAGNNNNNCTC 2 cut(s) 575, 607
Bpu10I CCTNAGC 1 cut(s) 216
BpuMI CCSGG 1 cut(s) 862
BsaJI CCNNGG 4 cut(s) 519, 598, 723, 724
BsaWI WCCGGW 1 cut(s) 833
Bsc4I CCNNNNNNNGG 4 cut(s) 299, 327, 730, 818
Bse118I RCCGGY 1 cut(s) 793
Bse3DI GCAATG 2 cut(s) 475, 787
BseBI CCWGG 2 cut(s) 599, 725
BseDI CCNNGG 4 cut(s) 519, 598, 723, 724
BseGI GGATG 2 cut(s) 426, 490
BseLI CCNNNNNNNGG 4 cut(s) 299, 327, 730, 818
BseMI GCAATG 2 cut(s) 475, 787
BseMII CTCAG 3 cut(s) 128, 230, 655
BseRI GAGGAG 2 cut(s) 460, 616
BseX3I CGGCCG 1 cut(s) 179
BseXI GCAGC 2 cut(s) 247, 622
BseYI CCCAGC 1 cut(s) 53
BsgI GTGCAG 1 cut(s) 621
Bsh1285I CGRYCG 1 cut(s) 182
BshFI GGCC 2 cut(s) 181, 676
BshNI GGYRCC 1 cut(s) 289
BsiEI CGRYCG 1 cut(s) 182
BsiSI CCGG 3 cut(s) 794, 834, 861
BslI CCNNNNNNNGG 4 cut(s) 299, 327, 730, 818
BsnI GGCC 2 cut(s) 181, 676
Bsp143I GATC 6 cut(s) 79, 136, 417, 451, 472, 588
BspACI CCGC 2 cut(s) 178, 182
BspANI GGCC 2 cut(s) 181, 676
BspCNI CTCAG 3 cut(s) 127, 229, 654
BspHI TCATGA 1 cut(s) 414
BspLI GGNNCC 1 cut(s) 291
BspPI GGATC 2 cut(s) 131, 596
BspT107I GGYRCC 1 cut(s) 289
BspTI CTTAAG 1 cut(s) 239
BsrDI GCAATG 2 cut(s) 475, 787
BsrFI RCCGGY 1 cut(s) 793
BssAI RCCGGY 1 cut(s) 793
BssECI CCNNGG 4 cut(s) 519, 598, 723, 724
BssMI GATC 6 cut(s) 79, 136, 417, 451, 472, 588
BssT1I CCWWGG 1 cut(s) 519
Bst2UI CCWGG 2 cut(s) 599, 725
BstAFI CTTAAG 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 312
BstDEI CTNAG 4 cut(s) 114, 216, 458, 641
BstENI CCTNNNNNAGG 1 cut(s) 325
BstF5I GGATG 2 cut(s) 426, 490
BstHHI GCGC 1 cut(s) 716
BstKTI GATC 6 cut(s) 82, 139, 420, 454, 475, 591
BstMBI GATC 6 cut(s) 79, 136, 417, 451, 472, 588
BstMCI CGRYCG 1 cut(s) 182
BstMWI GCNNNNNNNGC 1 cut(s) 217
BstNI CCWGG 2 cut(s) 599, 725
BstSCI CCNGG 3 cut(s) 597, 723, 860
BstV1I GCAGC 2 cut(s) 247, 622
BstX2I RGATCY 1 cut(s) 588
BstYI RGATCY 1 cut(s) 588
BstZI CGGCCG 1 cut(s) 179
BsuRI GGCC 2 cut(s) 181, 676
BtgZI GCGATG 1 cut(s) 241
BtsCI GGATG 2 cut(s) 426, 490
Cac8I GCNNGC 1 cut(s) 312
CciI TCATGA 1 cut(s) 414
CciNI GCGGCCGC 1 cut(s) 179
CfoI GCGC 1 cut(s) 716
Cfr10I RCCGGY 1 cut(s) 793
Csp6I GTAC 1 cut(s) 787
CviAII CATG 2 cut(s) 152, 415
CviJI RGCY 7 cut(s) 57, 181, 220, 244, 314, 676, 737
CviKI_1 RGCY 7 cut(s) 57, 181, 220, 244, 314, 676, 737
CviQI GTAC 1 cut(s) 787
DdeI CTNAG 4 cut(s) 114, 216, 458, 641
DpnI GATC 6 cut(s) 81, 138, 419, 453, 474, 590
DpnII GATC 6 cut(s) 79, 136, 417, 451, 472, 588
EaeI YGGCCR 2 cut(s) 179, 674
EagI CGGCCG 1 cut(s) 179
EclXI CGGCCG 1 cut(s) 179
Eco130I CCWWGG 1 cut(s) 519
Eco52I CGGCCG 1 cut(s) 179
EcoNI CCTNNNNNAGG 1 cut(s) 325
EcoRII CCWGG 2 cut(s) 597, 723
EcoT14I CCWWGG 1 cut(s) 519
ErhI CCWWGG 1 cut(s) 519
FaeI CATG 2 cut(s) 155, 418
FatI CATG 2 cut(s) 151, 414
FbaI TGATCA 2 cut(s) 79, 417
Fnu4HI GCNGC 4 cut(s) 179, 182, 261, 636
FokI GGATG 2 cut(s) 413, 497
Fsp4HI GCNGC 4 cut(s) 179, 182, 261, 636
FspBI CTAG 2 cut(s) 204, 333
GlaI GCGC 1 cut(s) 715
GluI GCNGC 4 cut(s) 179, 182, 261, 636
GsaI CCCAGC 1 cut(s) 57
HaeIII GGCC 2 cut(s) 181, 676
HapII CCGG 3 cut(s) 794, 834, 861
HhaI GCGC 1 cut(s) 716
Hin1II CATG 2 cut(s) 155, 418
Hin6I GCGC 1 cut(s) 714
HinP1I GCGC 1 cut(s) 714
HindIII AAGCTT 2 cut(s) 312, 735
HinfI GANTC 3 cut(s) 118, 645, 874
HpaII CCGG 3 cut(s) 794, 834, 861
HphI GGTGA 1 cut(s) 808
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 7 cut(s) 117, 282, 514, 532, 644, 851, 879
Hpy188III TCNNGA 5 cut(s) 103, 344, 415, 421, 754
Hpy8I GTNNAC 1 cut(s) 106
HpyAV CCTTC 1 cut(s) 98
HpyCH4IV ACGT 1 cut(s) 129
HpyCH4V TGCA 1 cut(s) 638
HpyF10VI GCNNNNNNNGC 1 cut(s) 217
HpyF3I CTNAG 4 cut(s) 114, 216, 458, 641
HpySE526I ACGT 1 cut(s) 129
Hsp92II CATG 2 cut(s) 155, 418
HspAI GCGC 1 cut(s) 714
Ksp22I TGATCA 2 cut(s) 79, 417
Kzo9I GATC 6 cut(s) 79, 136, 417, 451, 472, 588
Lsp1109I GCAGC 2 cut(s) 247, 622
MaeI CTAG 2 cut(s) 204, 333
MaeII ACGT 1 cut(s) 129
MaeIII GTNAC 2 cut(s) 706, 773
MalI GATC 6 cut(s) 81, 138, 419, 453, 474, 590
MboI GATC 6 cut(s) 79, 136, 417, 451, 472, 588
MboII GAAGA 2 cut(s) 237, 345
MflI RGATCY 1 cut(s) 588
MlsI TGGCCA 1 cut(s) 676
MluCI AATT 4 cut(s) 360, 616, 665, 749
MluNI TGGCCA 1 cut(s) 676
MlyI GAGTC 1 cut(s) 112
MmeI TCCRAC 4 cut(s) 185, 395, 618, 829
Mox20I TGGCCA 1 cut(s) 676
MscI TGGCCA 1 cut(s) 676
MseI TTAA 5 cut(s) 32, 240, 494, 740, 825
MslI CAYNNNNRTG 1 cut(s) 780
Msp20I TGGCCA 1 cut(s) 676
MspA1I CMGCKG 1 cut(s) 178
MspCI CTTAAG 1 cut(s) 239
MspI CCGG 3 cut(s) 794, 834, 861
MspR9I CCNGG 3 cut(s) 599, 725, 862
MvaI CCWGG 2 cut(s) 599, 725
MwoI GCNNNNNNNGC 1 cut(s) 217
NciI CCSGG 1 cut(s) 862
NdeII GATC 6 cut(s) 79, 136, 417, 451, 472, 588
NlaIII CATG 2 cut(s) 155, 418
NlaIV GGNNCC 1 cut(s) 291
NmuCI GTSAC 1 cut(s) 773
NotI GCGGCCGC 1 cut(s) 179
PagI TCATGA 1 cut(s) 414
PasI CCCWGGG 1 cut(s) 724
PfeI GAWTC 2 cut(s) 645, 874
PkrI GCNGC 4 cut(s) 180, 183, 262, 637
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
Psp6I CCWGG 2 cut(s) 597, 723
PspFI CCCAGC 1 cut(s) 53
PspGI CCWGG 2 cut(s) 597, 723
PspN4I GGNNCC 1 cut(s) 291
PsuI RGATCY 1 cut(s) 588
RsaI GTAC 1 cut(s) 788
RsaNI GTAC 1 cut(s) 787
RseI CAYNNNNRTG 1 cut(s) 780
SaqAI TTAA 5 cut(s) 32, 240, 494, 740, 825
SatI GCNGC 4 cut(s) 179, 182, 261, 636
Sau3AI GATC 6 cut(s) 79, 136, 417, 451, 472, 588
ScaI AGTACT 1 cut(s) 788
SchI GAGTC 1 cut(s) 112
ScrFI CCNGG 3 cut(s) 599, 725, 862
SetI ASST 9 cut(s) 16, 132, 316, 323, 600, 626, 708, 739, 811
SmiMI CAYNNNNRTG 1 cut(s) 780
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 4 cut(s) 360, 616, 665, 749
SsiI CCGC 2 cut(s) 178, 182
SspMI CTAG 2 cut(s) 204, 333
StyD4I CCNGG 3 cut(s) 597, 723, 860
StyI CCWWGG 1 cut(s) 519
TaiI ACGT 1 cut(s) 132
TaqI TCGA 2 cut(s) 223, 398
TasI AATT 4 cut(s) 360, 616, 665, 749
TatI WGTACW 1 cut(s) 786
TauI GCSGC 2 cut(s) 181, 184
TfiI GAWTC 2 cut(s) 645, 874
Tru1I TTAA 5 cut(s) 32, 240, 494, 740, 825
Tru9I TTAA 5 cut(s) 32, 240, 494, 740, 825
TseFI GTSAC 1 cut(s) 773
TseI GCWGC 2 cut(s) 260, 635
Tsp45I GTSAC 1 cut(s) 773
TspDTI ATGAA 1 cut(s) 133
Vha464I CTTAAG 1 cut(s) 239
XagI CCTNNNNNAGG 1 cut(s) 325
XapI RAATTY 3 cut(s) 616, 665, 749
XspI CTAG 2 cut(s) 204, 333
ZrmI AGTACT 1 cut(s) 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.