Rh6BG366900

RNA recognition motif 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001927
Physical Location & Seq
Reverse (-)
59620837 .. 59621977
1141 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG366900.1

Sequence Viewer

Length: 612 bp
ATGAGACGACTTCGAAAAAGGAACGGTCGCAAAAGGAACATTGGTGCTTTGAGTCGTGGTGCTACTGGGGAGGGAGGTGTAATTCCATTTCCTTCAGGTCCGGATCAGCAGCAAAATGGGTCGTCAGCAACTACAACTATCATGATAAAGAATATCCCAAACCAGTTCAGGAGGAGTGATCTACTGGGTATATTGACGGAGCATTGCTTGGTAGAAAACCTAGATGCTGTGGTGCGGTCTGATCCTAACAAGTCCGAGTTTGATTTTGTGTATTTGCCCATGGATTTCAACAAAAATAGGGGTAGCAATTTGGGCTACGCATTTGTAAACTTCACCGGTGCAATTGGGGCACAACGATTCTACCAGCGTTACCACAATTTCGAGTGGGATGTTGAACAGAACAAAAAAACATGTGCAATTACCTGCGCTAAAATTCAGGGAAAGAAAGCACTAATCGGGAATTTTAGGCACAAAGTATTCCGGTGCGAGTTTGACGAGTACTTGCCTGTGGTTGTCGCACCTCCATGCGATGGTGTGTCGCCTCCGAAGCTCACACTTCTTGGAAAGCTTAGGGGTGCACCCAAGTACCCCACCAGTAGATTAAGAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_2

Protein Analysis

203

Amino Acids

22.84

Weight (kDa)

9.94

Isoelectric Point (pI)

48.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_2 PF04059 45 - 156 1.2e-17 RNA recognition motif 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 431
AccB7I CCANNNNNTGG 1 cut(s) 530
AccIII TCCGGA 1 cut(s) 100
AciI CCGC 1 cut(s) 235
AclWI GGATC 2 cut(s) 111, 236
AcsI RAATTY 2 cut(s) 432, 460
AcuI CTGAAG 1 cut(s) 78
AfaI GTAC 2 cut(s) 500, 587
AfiI CCNNNNNNNGG 1 cut(s) 530
AflIII ACRYGT 1 cut(s) 410
AgeI ACCGGT 1 cut(s) 335
AgsI TTSAA 2 cut(s) 289, 395
AluBI AGCT 2 cut(s) 550, 568
AluI AGCT 2 cut(s) 550, 568
Alw21I GWGCWC 1 cut(s) 580
Alw44I GTGCAC 1 cut(s) 576
AlwI GGATC 2 cut(s) 111, 236
Aor13HI TCCGGA 1 cut(s) 100
ApaLI GTGCAC 1 cut(s) 576
ApeKI GCWGC 1 cut(s) 109
ApoI RAATTY 2 cut(s) 432, 460
AsiGI ACCGGT 1 cut(s) 335
AspLEI GCGC 1 cut(s) 428
AspS9I GGNCC 1 cut(s) 98
AsuHPI GGTGA 1 cut(s) 325
AsuII TTCGAA 1 cut(s) 13
AvaII GGWCC 1 cut(s) 98
BaeGI GKGCMC 2 cut(s) 352, 580
BaeI ACNNNNGTAYC 2 cut(s) 569, 602
Bbv12I GWGCWC 1 cut(s) 580
BbvI GCAGC 1 cut(s) 121
BccI CCATC 1 cut(s) 524
BfaI CTAG 1 cut(s) 221
BfuAI ACCTGC 1 cut(s) 431
BisI GCNGC 1 cut(s) 110
BlsI GCNGC 1 cut(s) 111
BmcAI AGTACT 1 cut(s) 500
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 98
BmrI ACTGGG 2 cut(s) 75, 194
BmsI GCATC 1 cut(s) 214
BmuI ACTGGG 2 cut(s) 75, 194
Bpu10I CCTNAGC 1 cut(s) 569
Bpu14I TTCGAA 1 cut(s) 13
BsaJI CCNNGG 1 cut(s) 279
BsaWI WCCGGW 3 cut(s) 100, 335, 480
Bsc4I CCNNNNNNNGG 1 cut(s) 530
Bse118I RCCGGY 1 cut(s) 335
Bse1I ACTGG 4 cut(s) 70, 163, 189, 594
Bse3DI GCAATG 1 cut(s) 202
BseAI TCCGGA 1 cut(s) 100
BseDI CCNNGG 1 cut(s) 279
BseGI GGATG 1 cut(s) 394
BseLI CCNNNNNNNGG 1 cut(s) 530
BseMI GCAATG 1 cut(s) 202
BseNI ACTGG 4 cut(s) 70, 163, 189, 594
BseRI GAGGAG 1 cut(s) 187
BseSI GKGCMC 2 cut(s) 352, 580
BseXI GCAGC 1 cut(s) 121
Bsh1285I CGRYCG 1 cut(s) 28
BshTI ACCGGT 1 cut(s) 335
BsiEI CGRYCG 1 cut(s) 28
BsiHKAI GWGCWC 1 cut(s) 580
BsiSI CCGG 3 cut(s) 101, 336, 481
BslI CCNNNNNNNGG 1 cut(s) 530
Bsp119I TTCGAA 1 cut(s) 13
Bsp1286I GDGCHC 2 cut(s) 352, 580
Bsp13I TCCGGA 1 cut(s) 100
Bsp143I GATC 3 cut(s) 103, 178, 241
Bsp19I CCATGG 1 cut(s) 279
BspACI CCGC 1 cut(s) 235
BspEI TCCGGA 1 cut(s) 100
BspHI TCATGA 1 cut(s) 141
BspMI ACCTGC 1 cut(s) 431
BspPI GGATC 2 cut(s) 111, 236
BspT104I TTCGAA 1 cut(s) 13
BsrDI GCAATG 1 cut(s) 202
BsrFI RCCGGY 1 cut(s) 335
BsrI ACTGG 4 cut(s) 70, 163, 189, 594
BssAI RCCGGY 1 cut(s) 335
BssECI CCNNGG 1 cut(s) 279
BssMI GATC 3 cut(s) 103, 178, 241
BssT1I CCWWGG 1 cut(s) 279
Bst4CI ACNGT 1 cut(s) 26
BstBI TTCGAA 1 cut(s) 13
BstDEI CTNAG 1 cut(s) 569
BstDSI CCRYGG 1 cut(s) 279
BstF5I GGATG 1 cut(s) 394
BstHHI GCGC 1 cut(s) 428
BstKTI GATC 3 cut(s) 106, 181, 244
BstMBI GATC 3 cut(s) 103, 178, 241
BstMCI CGRYCG 1 cut(s) 28
BstMWI GCNNNNNNNGC 3 cut(s) 312, 347, 547
BstNSI RCATGY 1 cut(s) 414
BstSLI GKGCMC 2 cut(s) 352, 580
BstV1I GCAGC 1 cut(s) 121
BtgI CCRYGG 1 cut(s) 279
BtgZI GCGATG 1 cut(s) 543
BtsCI GGATG 1 cut(s) 394
BveI ACCTGC 1 cut(s) 431
CciI TCATGA 1 cut(s) 141
CfoI GCGC 1 cut(s) 428
Cfr10I RCCGGY 1 cut(s) 335
Cfr13I GGNCC 1 cut(s) 98
Csp6I GTAC 2 cut(s) 499, 586
CspAI ACCGGT 1 cut(s) 335
CviAII CATG 4 cut(s) 142, 280, 411, 525
CviJI RGCY 3 cut(s) 315, 550, 568
CviKI_1 RGCY 3 cut(s) 315, 550, 568
CviQI GTAC 2 cut(s) 499, 586
DdeI CTNAG 1 cut(s) 569
DpnI GATC 3 cut(s) 105, 180, 243
DpnII GATC 3 cut(s) 103, 178, 241
Eco130I CCWWGG 1 cut(s) 279
Eco47I GGWCC 1 cut(s) 98
Eco57I CTGAAG 1 cut(s) 78
EcoT14I CCWWGG 1 cut(s) 279
ErhI CCWWGG 1 cut(s) 279
FaeI CATG 4 cut(s) 145, 283, 414, 528
FaiI YATR 5 cut(s) 143, 191, 281, 412, 526
FatI CATG 4 cut(s) 141, 279, 410, 524
Fnu4HI GCNGC 1 cut(s) 110
FokI GGATG 1 cut(s) 401
Fsp4HI GCNGC 1 cut(s) 110
FspBI CTAG 1 cut(s) 221
GlaI GCGC 1 cut(s) 427
GluI GCNGC 1 cut(s) 110
HapII CCGG 3 cut(s) 101, 336, 481
HhaI GCGC 1 cut(s) 428
Hin1II CATG 4 cut(s) 145, 283, 414, 528
Hin6I GCGC 1 cut(s) 426
HinP1I GCGC 1 cut(s) 426
HindIII AAGCTT 1 cut(s) 566
HinfI GANTC 3 cut(s) 52, 357, 606
HpaII CCGG 3 cut(s) 101, 336, 481
HphI GGTGA 1 cut(s) 325
Hpy166II GTNNAC 2 cut(s) 328, 578
Hpy188I TCNGA 3 cut(s) 241, 256, 546
Hpy188III TCNNGA 4 cut(s) 101, 142, 169, 457
Hpy8I GTNNAC 2 cut(s) 328, 578
HpyAV CCTTC 1 cut(s) 102
HpyCH4III ACNGT 1 cut(s) 26
HpyCH4V TGCA 3 cut(s) 341, 416, 578
HpyF10VI GCNNNNNNNGC 3 cut(s) 312, 347, 547
HpyF3I CTNAG 1 cut(s) 569
Hsp92II CATG 4 cut(s) 145, 283, 414, 528
HspAI GCGC 1 cut(s) 426
Kpn2I TCCGGA 1 cut(s) 100
Kzo9I GATC 3 cut(s) 103, 178, 241
LmnI GCTCC 1 cut(s) 199
Lsp1109I GCAGC 1 cut(s) 121
LweI GCATC 1 cut(s) 214
MaeI CTAG 1 cut(s) 221
MaeIII GTNAC 1 cut(s) 368
MalI GATC 3 cut(s) 105, 180, 243
MboI GATC 3 cut(s) 103, 178, 241
MfeI CAATTG 1 cut(s) 342
MhlI GDGCHC 2 cut(s) 352, 580
MluCI AATT 7 cut(s) 81, 307, 342, 376, 417, 432, 460
MlyI GAGTC 1 cut(s) 61
MnlI CCTC 5 cut(s) 64, 68, 165, 531, 552
MroI TCCGGA 1 cut(s) 100
MseI TTAA 1 cut(s) 602
MslI CAYNNNNRTG 1 cut(s) 523
MspI CCGG 3 cut(s) 101, 336, 481
MunI CAATTG 1 cut(s) 342
MwoI GCNNNNNNNGC 3 cut(s) 312, 347, 547
NcoI CCATGG 1 cut(s) 279
NdeII GATC 3 cut(s) 103, 178, 241
NlaIII CATG 4 cut(s) 145, 283, 414, 528
NspI RCATGY 1 cut(s) 414
NspV TTCGAA 1 cut(s) 13
PagI TCATGA 1 cut(s) 141
PciI ACATGT 1 cut(s) 410
PfeI GAWTC 2 cut(s) 357, 606
PflMI CCANNNNNTGG 1 cut(s) 530
PinAI ACCGGT 1 cut(s) 335
PkrI GCNGC 1 cut(s) 111
PleI GAGTC 1 cut(s) 60
PpsI GAGTC 1 cut(s) 60
PscI ACATGT 1 cut(s) 410
PspPI GGNCC 1 cut(s) 98
RsaI GTAC 2 cut(s) 500, 587
RsaNI GTAC 2 cut(s) 499, 586
RseI CAYNNNNRTG 1 cut(s) 523
SaqAI TTAA 1 cut(s) 602
SatI GCNGC 1 cut(s) 110
Sau3AI GATC 3 cut(s) 103, 178, 241
Sau96I GGNCC 1 cut(s) 98
ScaI AGTACT 1 cut(s) 500
SchI GAGTC 1 cut(s) 61
SduI GDGCHC 2 cut(s) 352, 580
SetI ASST 7 cut(s) 79, 100, 222, 425, 523, 552, 570
SfaNI GCATC 1 cut(s) 214
SfuI TTCGAA 1 cut(s) 13
SgrAI CRCCGGYG 1 cut(s) 335
SinI GGWCC 1 cut(s) 98
SmiMI CAYNNNNRTG 1 cut(s) 523
Sse9I AATT 7 cut(s) 81, 307, 342, 376, 417, 432, 460
SsiI CCGC 1 cut(s) 235
SspMI CTAG 1 cut(s) 221
StyI CCWWGG 1 cut(s) 279
TaaI ACNGT 1 cut(s) 26
TaqI TCGA 2 cut(s) 13, 381
TasI AATT 7 cut(s) 81, 307, 342, 376, 417, 432, 460
TatI WGTACW 1 cut(s) 498
TfiI GAWTC 2 cut(s) 357, 606
Tru1I TTAA 1 cut(s) 602
Tru9I TTAA 1 cut(s) 602
TseI GCWGC 1 cut(s) 109
TspGWI ACGGA 1 cut(s) 212
Van91I CCANNNNNTGG 1 cut(s) 530
VneI GTGCAC 1 cut(s) 576
VpaK11BI GGWCC 1 cut(s) 98
XapI RAATTY 2 cut(s) 432, 460
XceI RCATGY 1 cut(s) 414
XspI CTAG 1 cut(s) 221
ZrmI AGTACT 1 cut(s) 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.