Rh6DG360700

RNA recognition motif 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001927
Physical Location & Seq
Reverse (-)
55808141 .. 55808982
842 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG360700.1

Sequence Viewer

Length: 480 bp
ATGCCCAGTTCATGTCTAGTTCATTTCTCAAAGAGGAGTGATCTACTAAGTATGTTGAAAGATCATTGCTTGGATGAGAACTTAAACGCCGTGTTGCGGTCTGAGCCCAAGGAAAAATCCGAGTTTGATTTTCTCTACTTGCCTATGGATTTCAAGAAGTTTTGGGAAAAAGAGAGGATCTCCAACCTGGGATATGCTTTCGTAAATTTTACCTCCTCAAGTGCTGCACTCAGATTCTATAAGCAATACCACAAATTTGAGTGGCCAGTGCGGAAAAACAAGAAGATATGTGAGGTTACTTGCGCCAAAACCCAGGGCAAGGAAGCTTTAACCAGGAAATTCAAGAACAAGATATTTTGGTGTCACAGCAATGAGTACTTGCCGGTGATTTTAGCACCTCCCTGTGATGGTGTTAAGAACTCCGGTCTTGTAATGGTCGGAAAACTTGCCGGGCAACCAAAGATTCTGAAGAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_2

Protein Analysis

159

Amino Acids

18.47

Weight (kDa)

9.55

Isoelectric Point (pI)

47.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_2 PF04059 36 - 115 2.7e-14 RNA recognition motif 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 97, 271
AclWI GGATC 1 cut(s) 185
AcoI YGGCCR 1 cut(s) 263
AcsI RAATTY 3 cut(s) 205, 254, 338
AfaI GTAC 1 cut(s) 377
AfiI CCNNNNNNNGG 3 cut(s) 96, 319, 407
AgsI TTSAA 3 cut(s) 58, 154, 343
AjnI CCWGG 3 cut(s) 186, 312, 332
AluBI AGCT 1 cut(s) 326
AluI AGCT 1 cut(s) 326
AlwI GGATC 1 cut(s) 185
AoxI GGCC 1 cut(s) 263
ApeKI GCWGC 1 cut(s) 224
ApoI RAATTY 3 cut(s) 205, 254, 338
AspLEI GCGC 1 cut(s) 305
AsuC2I CCSGG 1 cut(s) 451
AsuHPI GGTGA 1 cut(s) 397
BalI TGGCCA 1 cut(s) 265
BanII GRGCYC 1 cut(s) 108
BbvI GCAGC 1 cut(s) 211
BccI CCATC 1 cut(s) 401
BceAI ACGGC 1 cut(s) 74
BciT130I CCWGG 3 cut(s) 188, 314, 334
BcnI CCSGG 1 cut(s) 451
BfaI CTAG 1 cut(s) 17
BisI GCNGC 1 cut(s) 225
BlsI GCNGC 1 cut(s) 226
BmcAI AGTACT 1 cut(s) 377
Bme1390I CCNGG 4 cut(s) 188, 314, 334, 451
BmrFI CCNGG 4 cut(s) 188, 314, 334, 451
BplI GAGNNNNNCTC 2 cut(s) 164, 196
BpuEI CTTGAG 1 cut(s) 202
BpuMI CCSGG 1 cut(s) 451
BsaJI CCNNGG 4 cut(s) 108, 187, 312, 313
BsaWI WCCGGW 1 cut(s) 422
Bsc4I CCNNNNNNNGG 3 cut(s) 96, 319, 407
Bse118I RCCGGY 1 cut(s) 382
Bse1I ACTGG 2 cut(s) 6, 266
Bse3DI GCAATG 2 cut(s) 64, 376
BseBI CCWGG 3 cut(s) 188, 314, 334
BseDI CCNNGG 4 cut(s) 108, 187, 312, 313
BseGI GGATG 1 cut(s) 79
BseLI CCNNNNNNNGG 3 cut(s) 96, 319, 407
BseMI GCAATG 2 cut(s) 64, 376
BseMII CTCAG 2 cut(s) 93, 244
BseNI ACTGG 2 cut(s) 6, 266
BseRI GAGGAG 2 cut(s) 49, 205
BseXI GCAGC 1 cut(s) 211
BsgI GTGCAG 1 cut(s) 210
BshFI GGCC 1 cut(s) 265
BsiSI CCGG 3 cut(s) 383, 423, 450
BslI CCNNNNNNNGG 3 cut(s) 96, 319, 407
BsnI GGCC 1 cut(s) 265
Bsp1286I GDGCHC 1 cut(s) 108
Bsp143I GATC 3 cut(s) 40, 61, 177
BspACI CCGC 2 cut(s) 97, 271
BspANI GGCC 1 cut(s) 265
BspCNI CTCAG 2 cut(s) 94, 243
BspPI GGATC 1 cut(s) 185
BsrDI GCAATG 2 cut(s) 64, 376
BsrFI RCCGGY 1 cut(s) 382
BsrI ACTGG 2 cut(s) 6, 266
BssAI RCCGGY 1 cut(s) 382
BssECI CCNNGG 4 cut(s) 108, 187, 312, 313
BssMI GATC 3 cut(s) 40, 61, 177
BssT1I CCWWGG 1 cut(s) 108
Bst2UI CCWGG 3 cut(s) 188, 314, 334
BstDEI CTNAG 3 cut(s) 47, 102, 230
BstF5I GGATG 1 cut(s) 79
BstHHI GCGC 1 cut(s) 305
BstKTI GATC 3 cut(s) 43, 64, 180
BstMBI GATC 3 cut(s) 40, 61, 177
BstMWI GCNNNNNNNGC 1 cut(s) 103
BstNI CCWGG 3 cut(s) 188, 314, 334
BstSCI CCNGG 4 cut(s) 186, 312, 332, 449
BstV1I GCAGC 1 cut(s) 211
BstX2I RGATCY 1 cut(s) 177
BstYI RGATCY 1 cut(s) 177
BsuRI GGCC 1 cut(s) 265
BtsCI GGATG 1 cut(s) 79
BtsIMutI CAGTG 1 cut(s) 273
CfoI GCGC 1 cut(s) 305
Cfr10I RCCGGY 1 cut(s) 382
Csp6I GTAC 1 cut(s) 376
CviAII CATG 1 cut(s) 12
CviJI RGCY 3 cut(s) 106, 265, 326
CviKI_1 RGCY 3 cut(s) 106, 265, 326
CviQI GTAC 1 cut(s) 376
DdeI CTNAG 3 cut(s) 47, 102, 230
DpnI GATC 3 cut(s) 42, 63, 179
DpnII GATC 3 cut(s) 40, 61, 177
EaeI YGGCCR 1 cut(s) 263
Eco130I CCWWGG 1 cut(s) 108
Eco24I GRGCYC 1 cut(s) 108
EcoRII CCWGG 3 cut(s) 186, 312, 332
EcoT14I CCWWGG 1 cut(s) 108
EcoT38I GRGCYC 1 cut(s) 108
ErhI CCWWGG 1 cut(s) 108
FaeI CATG 1 cut(s) 15
FaiI YATR 6 cut(s) 13, 53, 146, 195, 240, 289
FatI CATG 1 cut(s) 11
Fnu4HI GCNGC 1 cut(s) 225
FokI GGATG 1 cut(s) 86
FriOI GRGCYC 1 cut(s) 108
Fsp4HI GCNGC 1 cut(s) 225
FspBI CTAG 1 cut(s) 17
GlaI GCGC 1 cut(s) 304
GluI GCNGC 1 cut(s) 225
HaeIII GGCC 1 cut(s) 265
HapII CCGG 3 cut(s) 383, 423, 450
HhaI GCGC 1 cut(s) 305
Hin1II CATG 1 cut(s) 15
Hin6I GCGC 1 cut(s) 303
HinP1I GCGC 1 cut(s) 303
HindIII AAGCTT 1 cut(s) 324
HinfI GANTC 2 cut(s) 234, 463
HpaII CCGG 3 cut(s) 383, 423, 450
HphI GGTGA 1 cut(s) 397
Hpy188I TCNGA 5 cut(s) 103, 121, 233, 440, 468
Hpy188III TCNNGA 2 cut(s) 154, 343
HpyCH4V TGCA 1 cut(s) 227
HpyF10VI GCNNNNNNNGC 1 cut(s) 103
HpyF3I CTNAG 3 cut(s) 47, 102, 230
Hsp92II CATG 1 cut(s) 15
HspAI GCGC 1 cut(s) 303
Kzo9I GATC 3 cut(s) 40, 61, 177
Lsp1109I GCAGC 1 cut(s) 211
MaeI CTAG 1 cut(s) 17
MaeIII GTNAC 2 cut(s) 295, 362
MalI GATC 3 cut(s) 42, 63, 179
MboI GATC 3 cut(s) 40, 61, 177
MboII GAAGA 1 cut(s) 295
MflI RGATCY 1 cut(s) 177
MhlI GDGCHC 1 cut(s) 108
MlsI TGGCCA 1 cut(s) 265
MluCI AATT 3 cut(s) 205, 254, 338
MluNI TGGCCA 1 cut(s) 265
MmeI TCCRAC 2 cut(s) 207, 418
MnlI CCTC 6 cut(s) 27, 168, 223, 226, 286, 408
Mox20I TGGCCA 1 cut(s) 265
MscI TGGCCA 1 cut(s) 265
MseI TTAA 3 cut(s) 83, 329, 414
MslI CAYNNNNRTG 1 cut(s) 369
Msp20I TGGCCA 1 cut(s) 265
MspI CCGG 3 cut(s) 383, 423, 450
MspR9I CCNGG 4 cut(s) 188, 314, 334, 451
MvaI CCWGG 3 cut(s) 188, 314, 334
MwoI GCNNNNNNNGC 1 cut(s) 103
NciI CCSGG 1 cut(s) 451
NdeII GATC 3 cut(s) 40, 61, 177
NlaIII CATG 1 cut(s) 15
NmuCI GTSAC 1 cut(s) 362
PasI CCCWGGG 1 cut(s) 313
PfeI GAWTC 2 cut(s) 234, 463
PkrI GCNGC 1 cut(s) 226
Psp6I CCWGG 3 cut(s) 186, 312, 332
PspGI CCWGG 3 cut(s) 186, 312, 332
PsuI RGATCY 1 cut(s) 177
RsaI GTAC 1 cut(s) 377
RsaNI GTAC 1 cut(s) 376
RseI CAYNNNNRTG 1 cut(s) 369
SaqAI TTAA 3 cut(s) 83, 329, 414
SatI GCNGC 1 cut(s) 225
Sau3AI GATC 3 cut(s) 40, 61, 177
ScaI AGTACT 1 cut(s) 377
ScrFI CCNGG 4 cut(s) 188, 314, 334, 451
SduI GDGCHC 1 cut(s) 108
SetI ASST 5 cut(s) 189, 215, 297, 328, 400
SmiMI CAYNNNNRTG 1 cut(s) 369
SmlI CTYRAG 1 cut(s) 217
SmoI CTYRAG 1 cut(s) 217
Sse9I AATT 3 cut(s) 205, 254, 338
SsiI CCGC 2 cut(s) 97, 271
SspMI CTAG 1 cut(s) 17
StyD4I CCNGG 4 cut(s) 186, 312, 332, 449
StyI CCWWGG 1 cut(s) 108
TasI AATT 3 cut(s) 205, 254, 338
TatI WGTACW 1 cut(s) 375
TfiI GAWTC 2 cut(s) 234, 463
Tru1I TTAA 3 cut(s) 83, 329, 414
Tru9I TTAA 3 cut(s) 83, 329, 414
TscAI CASTG 1 cut(s) 273
TseFI GTSAC 1 cut(s) 362
TseI GCWGC 1 cut(s) 224
Tsp45I GTSAC 1 cut(s) 362
TspDTI ATGAA 1 cut(s) 11
TspRI CASTG 1 cut(s) 273
XapI RAATTY 3 cut(s) 205, 254, 338
XspI CTAG 1 cut(s) 17
ZrmI AGTACT 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.