Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006264.1

Orthogroup ID

OG0001927

Physical Location & Seq

Genomic Coordinates Forward (+)

46877 .. 48708

Gene Structure 1832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006264.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

atgtcctcaaaatctctcaacccaaatgccaaacccttcttccactttccgtccatcacgtacactaaacccctcaaccctaatgccaacccatttcacattcagacttatctctgcaacccttcttggcagtggcgaccatttatcccaaaaactagtaacaaattaacaatggataatcttccaagagtgagacagttttcccgtactatgaaccacaatattccggtcaggcgtaagcatcatgtcttctccggtccttccgttcatgtatggaaagccaagcctgaagagcacaaggatcggaggaacgacaaattattggagaagaagaggagcagcaaagggaaagtcattccttttcctttatgttcatctgaccagaaaccattttgcaccacagtgatgatcaagaatattcccaatcagttccggaggactaatttggtgaccatattgagaagccactgcaaggaggaaaacaaaaagtctgagtacaaatctgagttcgattttgtgtatttgccaatggatttccagcaatactgggagaagaagagggttgtaaatctgggttatgcctttgtcaacttcaccagttacgttgctgctttgaggttctttcaatactaccacaaccgagaatggaatgtgaagcttaacaacaaaatttgtcaagttacctgcgccaaaatccagggaaaggaagctcttatgcggcgatttgagaacagtgtattctggtgccacaccgatatgtacttgcctgtggttttggaaccagcctgtgatggtgagcttctgcccaacctcatcagcgttggacgccgtggaaaggaagctcttatgcggcgatttgagaacagtgtattctggtgccacaccgatatgtacttgcctgtggttttggaaccagcctgtgatggtgagcttctgcccaacctcatcagcgttggacgccgtgtttgtgcaccttcgaggaaacccagaacaaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_2

Protein Analysis

332

Amino Acids

39.13

Weight (kDa)

9.83

Isoelectric Point (pI)

57.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G37140 AT1G37140
fragaria_vesca	FvH4_2g26190 FvH4_2g26200 FvH4_2g26210 FvH4_2g26220
malus_domestica	MD08G1171900.v1.1 MD08G1172100.v1.1 MD15G1357500.v1.1
prunus_persica	Prupe.1G504600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0294631 RchiOBHm_Chr6g0294781 RchiOBHm_Chr6g0294791
rosa_laevigata	RLG00000011840 RLG00000011841 RLG00000011842 RLG00000011853
rosa_multiflora	Rmu_sc0001331.1_g000005 Rmu_sc0001331.1_g000006 Rmu_sc0006264.1_g000009
rosa_roxburghii	Rroxscaffold_7G00173010 Rroxscaffold_7G00173020 Rroxscaffold_7G00173030 Rroxscaffold_7G00173150
rosa_rugosa	Rorug06G0246400 Rorug06G0246900 Rorug06G0246900 Rorug06G0246900
rosa_samantha	Rh6AG358800 Rh6AG360300 Rh6AG360400 Rh6BG366000 Rh6BG366900 Rh6BG367000 Rh6BG367100 Rh6CG372600 Rh6CG372800 Rh6CG374000 Rh6CG374100 Rh6DG359400 Rh6DG359700 Rh6DG360600 Rh6DG360700
rosa_wichuraiana	Rw6G031310 Rw6G031430 Rw6G031440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	692
AccB1I	GGYRCC	2 cut(s)	744, 876
AccIII	TCCGGA	1 cut(s)	432
AciI	CCGC	2 cut(s)	718, 850
AclWI	GGATC	1 cut(s)	309
AcsI	RAATTY	1 cut(s)	669
AcuI	CTGAAG	1 cut(s)	309
AcyI	GRCGYC	2 cut(s)	826, 958
AfaI	GTAC	5 cut(s)	62, 208, 497, 761, 893
AfiI	CCNNNNNNNGG	3 cut(s)	472, 703, 835
AgsI	TTSAA	1 cut(s)	626
AhlI	ACTAGT	1 cut(s)	155
AjnI	CCWGG	1 cut(s)	696
AjuI	GAANNNNNNNTTGG	2 cut(s)	23, 55
AleI	CACNNNNGTG	1 cut(s)	401
AluBI	AGCT	5 cut(s)	658, 710, 799, 842, 931
AluI	AGCT	5 cut(s)	658, 710, 799, 842, 931
Alw21I	GWGCWC	2 cut(s)	297, 973
Alw26I	GTCTC	1 cut(s)	187
Alw44I	GTGCAC	1 cut(s)	969
AlwI	GGATC	1 cut(s)	309
Aor13HI	TCCGGA	1 cut(s)	432
ApaLI	GTGCAC	1 cut(s)	969
ApeKI	GCWGC	2 cut(s)	339, 608
ApoI	RAATTY	1 cut(s)	669
ArsI	GACNNNNNNTTYG	4 cut(s)	336, 368, 948, 980
AspLEI	GCGC	1 cut(s)	689
AspS9I	GGNCC	1 cut(s)	257
AsuHPI	GGTGA	4 cut(s)	460, 586, 806, 938
AvaII	GGWCC	1 cut(s)	257
BaeGI	GKGCMC	1 cut(s)	973
BanI	GGYRCC	2 cut(s)	744, 876
BbsI	GAAGAC	1 cut(s)	241
Bbv12I	GWGCWC	2 cut(s)	297, 973
BbvI	GCAGC	2 cut(s)	351, 595
BccI	CCATC	3 cut(s)	62, 785, 917
BceAI	ACGGC	2 cut(s)	813, 945
BcgI	CGANNNNNNTGC	2 cut(s)	284, 318
BciT130I	CCWGG	1 cut(s)	698
BclI	TGATCA	1 cut(s)	408
BcoDI	GTCTC	1 cut(s)	187
BcuI	ACTAGT	1 cut(s)	155
BfaI	CTAG	1 cut(s)	156
BfuAI	ACCTGC	1 cut(s)	692
BisI	GCNGC	4 cut(s)	340, 609, 719, 851
BlsI	GCNGC	4 cut(s)	341, 610, 720, 852
Bme1390I	CCNGG	1 cut(s)	698
Bme18I	GGWCC	1 cut(s)	257
BmgT120I	GGNCC	1 cut(s)	257
BmiI	GGNNCC	4 cut(s)	746, 780, 878, 912
BmrFI	CCNGG	1 cut(s)	698
BmrI	ACTGGG	1 cut(s)	556
BmsI	GCATC	1 cut(s)	250
BmuI	ACTGGG	1 cut(s)	556
BpiI	GAAGAC	1 cut(s)	241
BsaAI	YACGTR	1 cut(s)	60
BsaHI	GRCGYC	2 cut(s)	826, 958
BsaJI	CCNNGG	2 cut(s)	697, 829
BsaWI	WCCGGW	3 cut(s)	226, 254, 432
Bsc4I	CCNNNNNNNGG	3 cut(s)	472, 703, 835
Bse1I	ACTGG	2 cut(s)	551, 597
BseAI	TCCGGA	1 cut(s)	432
BseBI	CCWGG	1 cut(s)	698
BseDI	CCNNGG	2 cut(s)	697, 829
BseLI	CCNNNNNNNGG	3 cut(s)	472, 703, 835
BseMII	CTCAG	2 cut(s)	483, 495
BseNI	ACTGG	2 cut(s)	551, 597
BseRI	GAGGAG	1 cut(s)	349
BseSI	GKGCMC	1 cut(s)	973
BseXI	GCAGC	2 cut(s)	351, 595
BshNI	GGYRCC	2 cut(s)	744, 876
BsiHKAI	GWGCWC	2 cut(s)	297, 973
BsiSI	CCGG	3 cut(s)	227, 255, 433
BslI	CCNNNNNNNGG	3 cut(s)	472, 703, 835
BsmAI	GTCTC	1 cut(s)	187
Bsp1286I	GDGCHC	2 cut(s)	297, 973
Bsp13I	TCCGGA	1 cut(s)	432
Bsp143I	GATC	2 cut(s)	301, 408
BspACI	CCGC	2 cut(s)	718, 850
BspCNI	CTCAG	2 cut(s)	484, 496
BspEI	TCCGGA	1 cut(s)	432
BspLI	GGNNCC	4 cut(s)	746, 780, 878, 912
BspMI	ACCTGC	1 cut(s)	692
BspPI	GGATC	1 cut(s)	309
BspQI	GCTCTTC	1 cut(s)	285
BspT107I	GGYRCC	2 cut(s)	744, 876
BsrI	ACTGG	2 cut(s)	551, 597
BssECI	CCNNGG	2 cut(s)	697, 829
BssMI	GATC	2 cut(s)	301, 408
BssNI	GRCGYC	2 cut(s)	826, 958
Bst2UI	CCWGG	1 cut(s)	698
Bst4CI	ACNGT	4 cut(s)	198, 403, 734, 866
Bst6I	CTCTTC	3 cut(s)	285, 326, 551
BstACI	GRCGYC	2 cut(s)	826, 958
BstBAI	YACGTR	1 cut(s)	60
BstDEI	CTNAG	2 cut(s)	492, 504
BstDSI	CCRYGG	1 cut(s)	829
BstEII	GGTNACC	1 cut(s)	448
BstHHI	GCGC	1 cut(s)	689
BstKTI	GATC	2 cut(s)	304, 411
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	2 cut(s)	301, 408
BstMWI	GCNNNNNNNGC	3 cut(s)	292, 825, 957
BstNI	CCWGG	1 cut(s)	698
BstPI	GGTNACC	1 cut(s)	448
BstSCI	CCNGG	1 cut(s)	696
BstSLI	GKGCMC	1 cut(s)	973
BstV1I	GCAGC	2 cut(s)	351, 595
BstV2I	GAAGAC	1 cut(s)	241
BtgI	CCRYGG	1 cut(s)	829
BtsI	GCAGTG	2 cut(s)	137, 466
BtsIMutI	CAGTG	5 cut(s)	137, 408, 466, 739, 871
BveI	ACCTGC	1 cut(s)	692
CfoI	GCGC	1 cut(s)	689
Cfr13I	GGNCC	1 cut(s)	257
CseI	GACGC	2 cut(s)	834, 966
Csp6I	GTAC	5 cut(s)	61, 207, 496, 760, 892
CviAII	CATG	2 cut(s)	245, 269
CviQI	GTAC	5 cut(s)	61, 207, 496, 760, 892
DdeI	CTNAG	2 cut(s)	492, 504
DpnI	GATC	2 cut(s)	303, 410
DpnII	GATC	2 cut(s)	301, 408
Eam1104I	CTCTTC	3 cut(s)	285, 326, 551
EarI	CTCTTC	3 cut(s)	285, 326, 551
Eco47I	GGWCC	1 cut(s)	257
Eco57I	CTGAAG	1 cut(s)	309
Eco91I	GGTNACC	1 cut(s)	448
EcoO65I	GGTNACC	1 cut(s)	448
EcoRII	CCWGG	1 cut(s)	696
FaeI	CATG	2 cut(s)	248, 272
FatI	CATG	2 cut(s)	244, 268
FbaI	TGATCA	1 cut(s)	408
Fnu4HI	GCNGC	4 cut(s)	340, 609, 719, 851
Fsp4HI	GCNGC	4 cut(s)	340, 609, 719, 851
FspBI	CTAG	1 cut(s)	156
GlaI	GCGC	1 cut(s)	688
GluI	GCNGC	4 cut(s)	340, 609, 719, 851
HapII	CCGG	3 cut(s)	227, 255, 433
HgaI	GACGC	2 cut(s)	834, 966
HhaI	GCGC	1 cut(s)	689
Hin1I	GRCGYC	2 cut(s)	826, 958
Hin1II	CATG	2 cut(s)	248, 272
Hin6I	GCGC	1 cut(s)	687
HinP1I	GCGC	1 cut(s)	687
HincII	GTYRAC	1 cut(s)	589
HindII	GTYRAC	1 cut(s)	589
HindIII	AAGCTT	1 cut(s)	656
HpaII	CCGG	3 cut(s)	227, 255, 433
HphI	GGTGA	4 cut(s)	460, 586, 806, 938
Hpy166II	GTNNAC	3 cut(s)	63, 589, 971
Hpy188I	TCNGA	5 cut(s)	105, 306, 379, 493, 505
Hpy188III	TCNNGA	2 cut(s)	412, 433
Hpy8I	GTNNAC	3 cut(s)	63, 589, 971
HpyAV	CCTTC	4 cut(s)	46, 132, 270, 984
HpyCH4III	ACNGT	4 cut(s)	198, 403, 734, 866
HpyCH4IV	ACGT	2 cut(s)	59, 603
HpyCH4V	TGCA	4 cut(s)	117, 396, 471, 971
HpyF10VI	GCNNNNNNNGC	3 cut(s)	292, 825, 957
HpyF3I	CTNAG	2 cut(s)	492, 504
HpySE526I	ACGT	2 cut(s)	59, 603
Hsp92I	GRCGYC	2 cut(s)	826, 958
Hsp92II	CATG	2 cut(s)	248, 272
HspAI	GCGC	1 cut(s)	687
Kpn2I	TCCGGA	1 cut(s)	432
Ksp22I	TGATCA	1 cut(s)	408
Kzo9I	GATC	2 cut(s)	301, 408
LguI	GCTCTTC	1 cut(s)	285
LmnI	GCTCC	1 cut(s)	336
Lsp1109I	GCAGC	2 cut(s)	351, 595
LweI	GCATC	1 cut(s)	250
MaeI	CTAG	1 cut(s)	156
MaeII	ACGT	2 cut(s)	59, 603
MaeIII	GTNAC	4 cut(s)	158, 448, 599, 679
MalI	GATC	2 cut(s)	303, 410
MboI	GATC	2 cut(s)	301, 408
MboII	GAAGA	8 cut(s)	31, 173, 241, 302, 340, 343, 565, 568
MhlI	GDGCHC	2 cut(s)	297, 973
MluCI	AATT	4 cut(s)	164, 317, 442, 669
MmeI	TCCRAC	2 cut(s)	802, 934
MroI	TCCGGA	1 cut(s)	432
MseI	TTAA	2 cut(s)	167, 660
MslI	CAYNNNNRTG	4 cut(s)	401, 404, 755, 887
MspI	CCGG	3 cut(s)	227, 255, 433
MspR9I	CCNGG	1 cut(s)	698
MvaI	CCWGG	1 cut(s)	698
MwoI	GCNNNNNNNGC	3 cut(s)	292, 825, 957
NdeII	GATC	2 cut(s)	301, 408
NlaIII	CATG	2 cut(s)	248, 272
NlaIV	GGNNCC	4 cut(s)	746, 780, 878, 912
NmuCI	GTSAC	1 cut(s)	448
OliI	CACNNNNGTG	1 cut(s)	401
PciSI	GCTCTTC	1 cut(s)	285
PkrI	GCNGC	4 cut(s)	341, 610, 720, 852
Ppu21I	YACGTR	1 cut(s)	60
Psp6I	CCWGG	1 cut(s)	696
PspEI	GGTNACC	1 cut(s)	448
PspGI	CCWGG	1 cut(s)	696
PspN4I	GGNNCC	4 cut(s)	746, 780, 878, 912
PspPI	GGNCC	1 cut(s)	257
RsaI	GTAC	5 cut(s)	62, 208, 497, 761, 893
RsaNI	GTAC	5 cut(s)	61, 207, 496, 760, 892
RseI	CAYNNNNRTG	4 cut(s)	401, 404, 755, 887
SapI	GCTCTTC	1 cut(s)	285
SaqAI	TTAA	2 cut(s)	167, 660
SatI	GCNGC	4 cut(s)	340, 609, 719, 851
Sau3AI	GATC	2 cut(s)	301, 408
Sau96I	GGNCC	1 cut(s)	257
ScrFI	CCNGG	1 cut(s)	698
SduI	GDGCHC	2 cut(s)	297, 973
SfaNI	GCATC	1 cut(s)	250
SinI	GGWCC	1 cut(s)	257
SmiMI	CAYNNNNRTG	4 cut(s)	401, 404, 755, 887
SpeI	ACTAGT	1 cut(s)	155
Sse9I	AATT	4 cut(s)	164, 317, 442, 669
SsiI	CCGC	2 cut(s)	718, 850
SspI	AATATT	2 cut(s)	223, 418
SspMI	CTAG	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	696
TaaI	ACNGT	4 cut(s)	198, 403, 734, 866
TaiI	ACGT	2 cut(s)	62, 606
TaqI	TCGA	2 cut(s)	510, 977
TasI	AATT	4 cut(s)	164, 317, 442, 669
TatI	WGTACW	3 cut(s)	495, 759, 891
TauI	GCSGC	2 cut(s)	721, 853
Tru1I	TTAA	2 cut(s)	167, 660
Tru9I	TTAA	2 cut(s)	167, 660
TscAI	CASTG	5 cut(s)	137, 408, 473, 739, 871
TseFI	GTSAC	1 cut(s)	448
TseI	GCWGC	2 cut(s)	339, 608
Tsp45I	GTSAC	1 cut(s)	448
TspDTI	ATGAA	3 cut(s)	227, 257, 363
TspGWI	ACGGA	2 cut(s)	39, 253
TspRI	CASTG	5 cut(s)	137, 408, 473, 739, 871
VneI	GTGCAC	1 cut(s)	969
VpaK11BI	GGWCC	1 cut(s)	257
XapI	RAATTY	1 cut(s)	669
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.