RLG00000011840

RNA recognition motif 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001927
Physical Location & Seq
Forward (+)
13210626 .. 13211990
1365 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011840

Sequence Viewer

Length: 891 bp
ATGTTTCTTCAACCTCCAAGACAACCATACTTAATCCCCCAACCATTCTTTCCCAGCCATTTTTATTACCAAAACTATGATCAAGTCCTTCAACCCTATTTCGTGAACCTTTCTCAGACTCAAATCTACGTCTGTGATCCATTCATCTATCATGTCTTTCCAACATATTATTTTCAGCGGCCGCCAAACCCACCCATAAACCCTAGAGTGCTTCCTCAGCCTCGAAGAAATACTCGTCTTAAGCCAAAGAGGAACATCGCTGCTACTACTTCTGGCGTTCGGAAATGGGTGCAAAAAAGGAGAGATGAGCAAGCTTCTACCTCTATTAGGACTAGAAATGTTAGGGAGGGTTCTTCTGTAATTCCATTTCCAACAAGTCCTTATCAGCAAATAACTTCGACTACGACAACCATCATGATCAAGAACATCCCAAATCAGTTTGGGAGGAGTGATCTACTAAGTATGTTGAAAGATCATTGCTTGGATGAGAACTTAAACGCTGTGTTGCGGTCTGAAGCCAAGGAAAAATCCGAGTTTGATTTTCTCTACTTGCCTATGGATTTCAAGGAGTTTTGGGAAAAAGAGAGGACCTCCAACCTGGGATATGCTTTCGTAAATTTTACCTCCTCTTGTGCTGCACTCAGATTCTATAAGCAATACCACAAATTTGAGTGGCCAGTGCCGAAAAACAAAAAGATATGTGAGGTTACTTGCGCCAAAACCCAGGGCAAGGAAGCTTTAACCAAGAAATTCAAGAACAAGATATTTTGGTGTCACAGCAATGAGTACTTGCCGGTGATTTTAGCACCTCCCTGTGATGGTGTTAAGAATTCCGGTCTTGTAATGGTCGGAAAACTTGCCGGGCAACCAAAGATTCTGAAGAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_2

Protein Analysis

297

Amino Acids

34.64

Weight (kDa)

9.74

Isoelectric Point (pI)

54.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_2 PF04059 136 - 252 6.1e-17 RNA recognition motif 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 178, 182, 508
AclWI GGATC 1 cut(s) 131
AcoI YGGCCR 2 cut(s) 179, 674
AcsI RAATTY 4 cut(s) 616, 665, 749, 829
AcuI CTGAAG 1 cut(s) 534
AfaI GTAC 1 cut(s) 788
AfiI CCNNNNNNNGG 3 cut(s) 327, 730, 818
AflII CTTAAG 1 cut(s) 239
AgsI TTSAA 5 cut(s) 11, 92, 469, 565, 754
AjnI CCWGG 2 cut(s) 597, 723
AjuI GAANNNNNNNTTGG 2 cut(s) 33, 65
AluBI AGCT 2 cut(s) 314, 737
AluI AGCT 2 cut(s) 314, 737
AlwI GGATC 1 cut(s) 131
AoxI GGCC 2 cut(s) 179, 674
ApeKI GCWGC 2 cut(s) 260, 635
ApoI RAATTY 4 cut(s) 616, 665, 749, 829
AspLEI GCGC 1 cut(s) 716
AspS9I GGNCC 1 cut(s) 588
AsuC2I CCSGG 1 cut(s) 862
AsuHPI GGTGA 1 cut(s) 808
AvaII GGWCC 1 cut(s) 588
BalI TGGCCA 1 cut(s) 676
BbvCI CCTCAGC 1 cut(s) 216
BbvI GCAGC 2 cut(s) 247, 622
BccI CCATC 2 cut(s) 419, 812
BciT130I CCWGG 2 cut(s) 599, 725
BclI TGATCA 2 cut(s) 79, 417
BcnI CCSGG 1 cut(s) 862
BfaI CTAG 2 cut(s) 204, 333
BfrI CTTAAG 1 cut(s) 239
BisI GCNGC 4 cut(s) 179, 182, 261, 636
BlsI GCNGC 4 cut(s) 180, 183, 262, 637
BmcAI AGTACT 1 cut(s) 788
Bme1390I CCNGG 3 cut(s) 599, 725, 862
Bme18I GGWCC 1 cut(s) 588
BmgT120I GGNCC 1 cut(s) 588
BmrFI CCNGG 3 cut(s) 599, 725, 862
BplI GAGNNNNNCTC 2 cut(s) 575, 607
Bpu10I CCTNAGC 1 cut(s) 216
BpuMI CCSGG 1 cut(s) 862
BsaJI CCNNGG 4 cut(s) 519, 598, 723, 724
BsaWI WCCGGW 1 cut(s) 833
Bsc4I CCNNNNNNNGG 3 cut(s) 327, 730, 818
Bse118I RCCGGY 1 cut(s) 793
Bse1I ACTGG 1 cut(s) 677
Bse3DI GCAATG 2 cut(s) 475, 787
BseBI CCWGG 2 cut(s) 599, 725
BseDI CCNNGG 4 cut(s) 519, 598, 723, 724
BseGI GGATG 2 cut(s) 426, 490
BseLI CCNNNNNNNGG 3 cut(s) 327, 730, 818
BseMI GCAATG 2 cut(s) 475, 787
BseMII CTCAG 3 cut(s) 128, 230, 655
BseNI ACTGG 1 cut(s) 677
BseRI GAGGAG 2 cut(s) 460, 616
BseX3I CGGCCG 1 cut(s) 179
BseXI GCAGC 2 cut(s) 247, 622
BseYI CCCAGC 1 cut(s) 53
BsgI GTGCAG 1 cut(s) 621
Bsh1285I CGRYCG 1 cut(s) 182
BshFI GGCC 2 cut(s) 181, 676
BsiEI CGRYCG 1 cut(s) 182
BsiSI CCGG 3 cut(s) 794, 834, 861
BslI CCNNNNNNNGG 3 cut(s) 327, 730, 818
BsnI GGCC 2 cut(s) 181, 676
Bsp143I GATC 5 cut(s) 79, 136, 417, 451, 472
BspACI CCGC 3 cut(s) 178, 182, 508
BspANI GGCC 2 cut(s) 181, 676
BspCNI CTCAG 3 cut(s) 127, 229, 654
BspHI TCATGA 1 cut(s) 414
BspPI GGATC 1 cut(s) 131
BspTI CTTAAG 1 cut(s) 239
BsrDI GCAATG 2 cut(s) 475, 787
BsrFI RCCGGY 1 cut(s) 793
BsrI ACTGG 1 cut(s) 677
BssAI RCCGGY 1 cut(s) 793
BssECI CCNNGG 4 cut(s) 519, 598, 723, 724
BssMI GATC 5 cut(s) 79, 136, 417, 451, 472
BssT1I CCWWGG 1 cut(s) 519
Bst2UI CCWGG 2 cut(s) 599, 725
BstAFI CTTAAG 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 312
BstDEI CTNAG 4 cut(s) 114, 216, 458, 641
BstENI CCTNNNNNAGG 1 cut(s) 325
BstF5I GGATG 2 cut(s) 426, 490
BstHHI GCGC 1 cut(s) 716
BstKTI GATC 5 cut(s) 82, 139, 420, 454, 475
BstMBI GATC 5 cut(s) 79, 136, 417, 451, 472
BstMCI CGRYCG 1 cut(s) 182
BstMWI GCNNNNNNNGC 1 cut(s) 217
BstNI CCWGG 2 cut(s) 599, 725
BstSCI CCNGG 3 cut(s) 597, 723, 860
BstV1I GCAGC 2 cut(s) 247, 622
BstZI CGGCCG 1 cut(s) 179
BsuRI GGCC 2 cut(s) 181, 676
BtgZI GCGATG 1 cut(s) 241
BtsCI GGATG 2 cut(s) 426, 490
BtsIMutI CAGTG 1 cut(s) 684
Cac8I GCNNGC 1 cut(s) 312
CciI TCATGA 1 cut(s) 414
CciNI GCGGCCGC 1 cut(s) 179
CfoI GCGC 1 cut(s) 716
Cfr10I RCCGGY 1 cut(s) 793
Cfr13I GGNCC 1 cut(s) 588
Csp6I GTAC 1 cut(s) 787
CviAII CATG 2 cut(s) 152, 415
CviJI RGCY 8 cut(s) 57, 181, 220, 244, 314, 518, 676, 737
CviKI_1 RGCY 8 cut(s) 57, 181, 220, 244, 314, 518, 676, 737
CviQI GTAC 1 cut(s) 787
DdeI CTNAG 4 cut(s) 114, 216, 458, 641
DpnI GATC 5 cut(s) 81, 138, 419, 453, 474
DpnII GATC 5 cut(s) 79, 136, 417, 451, 472
EaeI YGGCCR 2 cut(s) 179, 674
EagI CGGCCG 1 cut(s) 179
EclXI CGGCCG 1 cut(s) 179
Eco130I CCWWGG 1 cut(s) 519
Eco47I GGWCC 1 cut(s) 588
Eco52I CGGCCG 1 cut(s) 179
Eco57I CTGAAG 1 cut(s) 534
EcoNI CCTNNNNNAGG 1 cut(s) 325
EcoO109I RGGNCCY 1 cut(s) 588
EcoRI GAATTC 1 cut(s) 829
EcoRII CCWGG 2 cut(s) 597, 723
EcoT14I CCWWGG 1 cut(s) 519
ErhI CCWWGG 1 cut(s) 519
FaeI CATG 2 cut(s) 155, 418
FatI CATG 2 cut(s) 151, 414
FbaI TGATCA 2 cut(s) 79, 417
Fnu4HI GCNGC 4 cut(s) 179, 182, 261, 636
FokI GGATG 2 cut(s) 413, 497
Fsp4HI GCNGC 4 cut(s) 179, 182, 261, 636
FspBI CTAG 2 cut(s) 204, 333
GlaI GCGC 1 cut(s) 715
GluI GCNGC 4 cut(s) 179, 182, 261, 636
GsaI CCCAGC 1 cut(s) 57
HaeIII GGCC 2 cut(s) 181, 676
HapII CCGG 3 cut(s) 794, 834, 861
HhaI GCGC 1 cut(s) 716
Hin1II CATG 2 cut(s) 155, 418
Hin6I GCGC 1 cut(s) 714
HinP1I GCGC 1 cut(s) 714
HindIII AAGCTT 2 cut(s) 312, 735
HinfI GANTC 3 cut(s) 118, 645, 874
HpaII CCGG 3 cut(s) 794, 834, 861
HphI GGTGA 1 cut(s) 808
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 7 cut(s) 117, 282, 514, 532, 644, 851, 879
Hpy188III TCNNGA 4 cut(s) 103, 415, 421, 754
Hpy8I GTNNAC 1 cut(s) 106
HpyAV CCTTC 1 cut(s) 98
HpyCH4IV ACGT 1 cut(s) 129
HpyCH4V TGCA 2 cut(s) 292, 638
HpyF10VI GCNNNNNNNGC 1 cut(s) 217
HpyF3I CTNAG 4 cut(s) 114, 216, 458, 641
HpySE526I ACGT 1 cut(s) 129
Hsp92II CATG 2 cut(s) 155, 418
HspAI GCGC 1 cut(s) 714
Ksp22I TGATCA 2 cut(s) 79, 417
Kzo9I GATC 5 cut(s) 79, 136, 417, 451, 472
Lsp1109I GCAGC 2 cut(s) 247, 622
MaeI CTAG 2 cut(s) 204, 333
MaeII ACGT 1 cut(s) 129
MaeIII GTNAC 2 cut(s) 706, 773
MalI GATC 5 cut(s) 81, 138, 419, 453, 474
MboI GATC 5 cut(s) 79, 136, 417, 451, 472
MboII GAAGA 2 cut(s) 237, 345
MlsI TGGCCA 1 cut(s) 676
MluCI AATT 5 cut(s) 360, 616, 665, 749, 829
MluNI TGGCCA 1 cut(s) 676
MlyI GAGTC 1 cut(s) 112
MmeI TCCRAC 4 cut(s) 185, 395, 618, 829
Mox20I TGGCCA 1 cut(s) 676
MscI TGGCCA 1 cut(s) 676
MseI TTAA 5 cut(s) 32, 240, 494, 740, 825
MslI CAYNNNNRTG 1 cut(s) 780
Msp20I TGGCCA 1 cut(s) 676
MspA1I CMGCKG 1 cut(s) 178
MspCI CTTAAG 1 cut(s) 239
MspI CCGG 3 cut(s) 794, 834, 861
MspR9I CCNGG 3 cut(s) 599, 725, 862
MvaI CCWGG 2 cut(s) 599, 725
MwoI GCNNNNNNNGC 1 cut(s) 217
NciI CCSGG 1 cut(s) 862
NdeII GATC 5 cut(s) 79, 136, 417, 451, 472
NlaIII CATG 2 cut(s) 155, 418
NmuCI GTSAC 1 cut(s) 773
NotI GCGGCCGC 1 cut(s) 179
PagI TCATGA 1 cut(s) 414
PasI CCCWGGG 1 cut(s) 724
PfeI GAWTC 2 cut(s) 645, 874
PkrI GCNGC 4 cut(s) 180, 183, 262, 637
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
PpuMI RGGWCCY 1 cut(s) 588
Psp5II RGGWCCY 1 cut(s) 588
Psp6I CCWGG 2 cut(s) 597, 723
PspFI CCCAGC 1 cut(s) 53
PspGI CCWGG 2 cut(s) 597, 723
PspPI GGNCC 1 cut(s) 588
PspPPI RGGWCCY 1 cut(s) 588
RsaI GTAC 1 cut(s) 788
RsaNI GTAC 1 cut(s) 787
RseI CAYNNNNRTG 1 cut(s) 780
SaqAI TTAA 5 cut(s) 32, 240, 494, 740, 825
SatI GCNGC 4 cut(s) 179, 182, 261, 636
Sau3AI GATC 5 cut(s) 79, 136, 417, 451, 472
Sau96I GGNCC 1 cut(s) 588
ScaI AGTACT 1 cut(s) 788
SchI GAGTC 1 cut(s) 112
ScrFI CCNGG 3 cut(s) 599, 725, 862
SinI GGWCC 1 cut(s) 588
SmiMI CAYNNNNRTG 1 cut(s) 780
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 5 cut(s) 360, 616, 665, 749, 829
SsiI CCGC 3 cut(s) 178, 182, 508
SspMI CTAG 2 cut(s) 204, 333
StyD4I CCNGG 3 cut(s) 597, 723, 860
StyI CCWWGG 1 cut(s) 519
TaiI ACGT 1 cut(s) 132
TaqI TCGA 2 cut(s) 223, 398
TasI AATT 5 cut(s) 360, 616, 665, 749, 829
TatI WGTACW 1 cut(s) 786
TauI GCSGC 2 cut(s) 181, 184
TfiI GAWTC 2 cut(s) 645, 874
Tru1I TTAA 5 cut(s) 32, 240, 494, 740, 825
Tru9I TTAA 5 cut(s) 32, 240, 494, 740, 825
TscAI CASTG 1 cut(s) 684
TseFI GTSAC 1 cut(s) 773
TseI GCWGC 2 cut(s) 260, 635
Tsp45I GTSAC 1 cut(s) 773
TspDTI ATGAA 1 cut(s) 133
TspRI CASTG 1 cut(s) 684
Vha464I CTTAAG 1 cut(s) 239
VpaK11BI GGWCC 1 cut(s) 588
XagI CCTNNNNNAGG 1 cut(s) 325
XapI RAATTY 4 cut(s) 616, 665, 749, 829
XspI CTAG 2 cut(s) 204, 333
ZrmI AGTACT 1 cut(s) 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.