RchiOBHm_Chr6g0294791

RNA recognition motif 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001927
Physical Location & Seq
Reverse (-)
56983170 .. 56984125
956 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26459

Sequence Viewer

Length: 477 bp
ATGATCAAGAACATCCCAAATCAGTTTGGGAGGAGTGATCTACTAAGTATGTTGAAAGATCATTGCTTGGATGAGAACTTAAACGCTGTGTTGCGGTCTGAACCCAAGGAAAAATCCGAGTTTGATTTTCTCTACTTGCCTATGGATTTCAAGAAGTTTTGGGAAAAAGAAAGGATCTCCAACCTGGGATATGCTTTCGTAAATTTTACCTCGTCTAGTGCCGCACTCAGATTCTATAAGCAATACCACAAATTTGAGTGGCCAGTGCCGAAAAACAAAAAGATATGTGAGGTTACTTGCGCCAAAACCCAGGGCAAGGAAGCTTTAACCAAGAAATTCAAGAACAAGATATTTTGGTGTCACAGCAATGAGTACTTGCCGGTGATTTTAGCACCTCCCTGTGATGGTGTTAAGAACTCCGGTCTTGTAATGGTCGGAAAACTTGCCGGGCAACCAAAGATTCTGAAGAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_2

Protein Analysis

158

Amino Acids

18.31

Weight (kDa)

9.52

Isoelectric Point (pI)

40.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_2 PF04059 1 - 114 9.1e-16 RNA recognition motif 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 94, 222
AclWI GGATC 1 cut(s) 182
AcoI YGGCCR 1 cut(s) 260
AcsI RAATTY 3 cut(s) 202, 251, 335
AfaI GTAC 1 cut(s) 374
AfiI CCNNNNNNNGG 2 cut(s) 316, 404
AgsI TTSAA 3 cut(s) 55, 151, 340
AjnI CCWGG 2 cut(s) 183, 309
AluBI AGCT 1 cut(s) 323
AluI AGCT 1 cut(s) 323
AlwI GGATC 1 cut(s) 182
AoxI GGCC 1 cut(s) 260
ApoI RAATTY 3 cut(s) 202, 251, 335
AspLEI GCGC 1 cut(s) 302
AsuC2I CCSGG 1 cut(s) 448
AsuHPI GGTGA 1 cut(s) 394
BalI TGGCCA 1 cut(s) 262
BccI CCATC 1 cut(s) 398
BciT130I CCWGG 2 cut(s) 185, 311
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 1 cut(s) 448
BfaI CTAG 1 cut(s) 216
BisI GCNGC 1 cut(s) 222
BlsI GCNGC 1 cut(s) 223
BmcAI AGTACT 1 cut(s) 374
Bme1390I CCNGG 3 cut(s) 185, 311, 448
BmrFI CCNGG 3 cut(s) 185, 311, 448
BpuMI CCSGG 1 cut(s) 448
BsaJI CCNNGG 4 cut(s) 105, 184, 309, 310
BsaWI WCCGGW 1 cut(s) 419
Bsc4I CCNNNNNNNGG 2 cut(s) 316, 404
Bse118I RCCGGY 1 cut(s) 379
Bse1I ACTGG 1 cut(s) 263
Bse3DI GCAATG 2 cut(s) 61, 373
BseBI CCWGG 2 cut(s) 185, 311
BseDI CCNNGG 4 cut(s) 105, 184, 309, 310
BseGI GGATG 2 cut(s) 12, 76
BseLI CCNNNNNNNGG 2 cut(s) 316, 404
BseMI GCAATG 2 cut(s) 61, 373
BseMII CTCAG 1 cut(s) 241
BseNI ACTGG 1 cut(s) 263
BseRI GAGGAG 1 cut(s) 46
BshFI GGCC 1 cut(s) 262
BsiSI CCGG 3 cut(s) 380, 420, 447
BslI CCNNNNNNNGG 2 cut(s) 316, 404
BsnI GGCC 1 cut(s) 262
Bsp143I GATC 4 cut(s) 3, 37, 58, 174
BspACI CCGC 2 cut(s) 94, 222
BspANI GGCC 1 cut(s) 262
BspCNI CTCAG 1 cut(s) 240
BspPI GGATC 1 cut(s) 182
BsrDI GCAATG 2 cut(s) 61, 373
BsrFI RCCGGY 1 cut(s) 379
BsrI ACTGG 1 cut(s) 263
BssAI RCCGGY 1 cut(s) 379
BssECI CCNNGG 4 cut(s) 105, 184, 309, 310
BssMI GATC 4 cut(s) 3, 37, 58, 174
BssT1I CCWWGG 1 cut(s) 105
Bst2UI CCWGG 2 cut(s) 185, 311
BstDEI CTNAG 2 cut(s) 44, 227
BstF5I GGATG 2 cut(s) 12, 76
BstHHI GCGC 1 cut(s) 302
BstKTI GATC 4 cut(s) 6, 40, 61, 177
BstMBI GATC 4 cut(s) 3, 37, 58, 174
BstNI CCWGG 2 cut(s) 185, 311
BstSCI CCNGG 3 cut(s) 183, 309, 446
BstX2I RGATCY 1 cut(s) 174
BstYI RGATCY 1 cut(s) 174
BsuRI GGCC 1 cut(s) 262
BtsCI GGATG 2 cut(s) 12, 76
BtsIMutI CAGTG 1 cut(s) 270
CfoI GCGC 1 cut(s) 302
Cfr10I RCCGGY 1 cut(s) 379
Csp6I GTAC 1 cut(s) 373
CviJI RGCY 2 cut(s) 262, 323
CviKI_1 RGCY 2 cut(s) 262, 323
CviQI GTAC 1 cut(s) 373
DdeI CTNAG 2 cut(s) 44, 227
DpnI GATC 4 cut(s) 5, 39, 60, 176
DpnII GATC 4 cut(s) 3, 37, 58, 174
EaeI YGGCCR 1 cut(s) 260
Eco130I CCWWGG 1 cut(s) 105
EcoRII CCWGG 2 cut(s) 183, 309
EcoT14I CCWWGG 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 105
FaiI YATR 5 cut(s) 50, 143, 192, 237, 286
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 1 cut(s) 222
FokI GGATG 1 cut(s) 83
Fsp4HI GCNGC 1 cut(s) 222
FspBI CTAG 1 cut(s) 216
GlaI GCGC 1 cut(s) 301
GluI GCNGC 1 cut(s) 222
HaeIII GGCC 1 cut(s) 262
HapII CCGG 3 cut(s) 380, 420, 447
HhaI GCGC 1 cut(s) 302
Hin6I GCGC 1 cut(s) 300
HinP1I GCGC 1 cut(s) 300
HindIII AAGCTT 1 cut(s) 321
HinfI GANTC 2 cut(s) 231, 460
HpaII CCGG 3 cut(s) 380, 420, 447
HphI GGTGA 1 cut(s) 394
Hpy188I TCNGA 5 cut(s) 100, 118, 230, 437, 465
Hpy188III TCNNGA 3 cut(s) 7, 151, 340
HpyF3I CTNAG 2 cut(s) 44, 227
HspAI GCGC 1 cut(s) 300
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 4 cut(s) 3, 37, 58, 174
LpnPI CCDG 9 cut(s) 170, 197, 276, 296, 323, 393, 412, 433, 460
MaeI CTAG 1 cut(s) 216
MaeIII GTNAC 2 cut(s) 292, 359
MalI GATC 4 cut(s) 5, 39, 60, 176
MboI GATC 4 cut(s) 3, 37, 58, 174
MflI RGATCY 1 cut(s) 174
MlsI TGGCCA 1 cut(s) 262
MluCI AATT 3 cut(s) 202, 251, 335
MluNI TGGCCA 1 cut(s) 262
MmeI TCCRAC 2 cut(s) 204, 415
MnlI CCTC 4 cut(s) 24, 220, 283, 405
Mox20I TGGCCA 1 cut(s) 262
MscI TGGCCA 1 cut(s) 262
MseI TTAA 3 cut(s) 80, 326, 411
MslI CAYNNNNRTG 1 cut(s) 366
Msp20I TGGCCA 1 cut(s) 262
MspI CCGG 3 cut(s) 380, 420, 447
MspR9I CCNGG 3 cut(s) 185, 311, 448
MvaI CCWGG 2 cut(s) 185, 311
NciI CCSGG 1 cut(s) 448
NdeII GATC 4 cut(s) 3, 37, 58, 174
NmuCI GTSAC 1 cut(s) 359
PasI CCCWGGG 1 cut(s) 310
PfeI GAWTC 2 cut(s) 231, 460
PkrI GCNGC 1 cut(s) 223
Psp6I CCWGG 2 cut(s) 183, 309
PspGI CCWGG 2 cut(s) 183, 309
PsuI RGATCY 1 cut(s) 174
RsaI GTAC 1 cut(s) 374
RsaNI GTAC 1 cut(s) 373
RseI CAYNNNNRTG 1 cut(s) 366
SaqAI TTAA 3 cut(s) 80, 326, 411
SatI GCNGC 1 cut(s) 222
Sau3AI GATC 4 cut(s) 3, 37, 58, 174
ScaI AGTACT 1 cut(s) 374
ScrFI CCNGG 3 cut(s) 185, 311, 448
SetI ASST 5 cut(s) 186, 212, 294, 325, 397
SmiMI CAYNNNNRTG 1 cut(s) 366
Sse9I AATT 3 cut(s) 202, 251, 335
SsiI CCGC 2 cut(s) 94, 222
SspMI CTAG 1 cut(s) 216
StyD4I CCNGG 3 cut(s) 183, 309, 446
StyI CCWWGG 1 cut(s) 105
TasI AATT 3 cut(s) 202, 251, 335
TatI WGTACW 1 cut(s) 372
TauI GCSGC 1 cut(s) 224
TfiI GAWTC 2 cut(s) 231, 460
Tru1I TTAA 3 cut(s) 80, 326, 411
Tru9I TTAA 3 cut(s) 80, 326, 411
TscAI CASTG 1 cut(s) 270
TseFI GTSAC 1 cut(s) 359
Tsp45I GTSAC 1 cut(s) 359
TspRI CASTG 1 cut(s) 270
XapI RAATTY 3 cut(s) 202, 251, 335
XspI CTAG 1 cut(s) 216
ZrmI AGTACT 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.