Rh6DG359400

RNA recognition motif 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001927
Physical Location & Seq
Reverse (-)
55696074 .. 55697669
1596 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG359400.1

Sequence Viewer

Length: 867 bp
ATGTCCTCAAAATCTCTCAACCCAAATGCCAAACCCTTCTTCCACTTTCCGTCCATCACGTACACTAAACCCCTCAACCCTAATGCCAACCCATTTCACATTCAGACTTATCTCTGCAACCCTTCTTGGCAGTGGCGACCATTTATCCCAAAAACTCGTAACAAATTAACAATGGATAATCTTCCAAGAGTGAGACAGTTTTCCCGTACTATGAACCATAATATTCCGGTCAGGCGTAAGCATCATGTCGTCTCCGGTCCTTCCGTTCATGTATGGAAAGCCAAGCCTGAAGAGCACAAGGATCAGAGGAACGACAAATTATTGGAGAAGAAGAGGAGCAGCAAAGGGAAAGTCATTCCTTTTCCTTTATGTTCATCTGACCAGAAACCATTTTGCACCACAGTGATGATCAAGAATATTCCCAATCAATTCCGGAGGACTAATTTGGTGACCATATTGAGAAGCCACTGCAAGGAGGAAAACAAAAAGTCTCAGTACAAATCTGAGTTCGATTTTGTGTATTTGCCAATGGATTTCCAGCAATACTGGGAGAAGAAGAGGGTTGTAAATCTGGGTTATGCCTTTGTCAACTTCACTAGTTACGTTGCTGCTTTGAGGTTCTTTCAATACTACCACAACAGAGAATGGAATGTGAAGCTTAACAACAAAATTTGTCAAGTTACCTGCGCCAAAATCCAGGGAAAGGAAGCTCTTATGCGGCGATTTGAGAACAGTGTATTCTGGTGCCACACCGATATGTACTTGCCTGTGGTTTTGGAACCAGCCTGTGACGGTGAGCTTCTGCCCGACCTCAACAACGTTGGAAGCCGTGTTTGTGCACCTTCGAGGAAACCCAGAACAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_2

Protein Analysis

288

Amino Acids

34.04

Weight (kDa)

9.94

Isoelectric Point (pI)

52.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_2 PF04059 133 - 242 1.8e-18 RNA recognition motif 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 692
AccB1I GGYRCC 1 cut(s) 744
AccIII TCCGGA 1 cut(s) 432
AciI CCGC 1 cut(s) 718
AclI AACGTT 1 cut(s) 819
AclWI GGATC 1 cut(s) 309
AcsI RAATTY 1 cut(s) 669
AcuI CTGAAG 1 cut(s) 309
AfaI GTAC 4 cut(s) 62, 208, 497, 761
AfiI CCNNNNNNNGG 2 cut(s) 472, 703
AgsI TTSAA 1 cut(s) 626
AhlI ACTAGT 1 cut(s) 596
AjnI CCWGG 1 cut(s) 696
AjuI GAANNNNNNNTTGG 2 cut(s) 23, 55
AleI CACNNNNGTG 1 cut(s) 401
AluBI AGCT 3 cut(s) 658, 710, 799
AluI AGCT 3 cut(s) 658, 710, 799
Alw21I GWGCWC 2 cut(s) 297, 841
Alw26I GTCTC 3 cut(s) 187, 256, 495
Alw44I GTGCAC 1 cut(s) 837
AlwI GGATC 1 cut(s) 309
Aor13HI TCCGGA 1 cut(s) 432
ApaLI GTGCAC 1 cut(s) 837
ApeKI GCWGC 2 cut(s) 339, 608
ApoI RAATTY 1 cut(s) 669
ArsI GACNNNNNNTTYG 2 cut(s) 336, 368
AspLEI GCGC 1 cut(s) 689
AspS9I GGNCC 1 cut(s) 257
AsuHPI GGTGA 2 cut(s) 460, 806
AvaII GGWCC 1 cut(s) 257
BaeGI GKGCMC 1 cut(s) 841
BanI GGYRCC 1 cut(s) 744
Bbv12I GWGCWC 2 cut(s) 297, 841
BbvI GCAGC 2 cut(s) 351, 595
BccI CCATC 1 cut(s) 62
BceAI ACGGC 1 cut(s) 813
BciT130I CCWGG 1 cut(s) 698
BclI TGATCA 1 cut(s) 408
BcoDI GTCTC 3 cut(s) 187, 256, 495
BcuI ACTAGT 1 cut(s) 596
BfaI CTAG 1 cut(s) 597
BfuAI ACCTGC 1 cut(s) 692
BisI GCNGC 3 cut(s) 340, 609, 719
BlsI GCNGC 3 cut(s) 341, 610, 720
Bme1390I CCNGG 1 cut(s) 698
Bme18I GGWCC 1 cut(s) 257
BmgT120I GGNCC 1 cut(s) 257
BmiI GGNNCC 2 cut(s) 746, 780
BmrFI CCNGG 1 cut(s) 698
BmrI ACTGGG 1 cut(s) 556
BmsI GCATC 1 cut(s) 250
BmuI ACTGGG 1 cut(s) 556
BsaAI YACGTR 1 cut(s) 60
BsaJI CCNNGG 1 cut(s) 697
BsaWI WCCGGW 3 cut(s) 226, 254, 432
Bsc4I CCNNNNNNNGG 2 cut(s) 472, 703
Bse1I ACTGG 1 cut(s) 551
BseAI TCCGGA 1 cut(s) 432
BseBI CCWGG 1 cut(s) 698
BseDI CCNNGG 1 cut(s) 697
BseLI CCNNNNNNNGG 2 cut(s) 472, 703
BseMII CTCAG 2 cut(s) 495, 506
BseNI ACTGG 1 cut(s) 551
BseRI GAGGAG 1 cut(s) 349
BseSI GKGCMC 1 cut(s) 841
BseXI GCAGC 2 cut(s) 351, 595
BshNI GGYRCC 1 cut(s) 744
BsiHKAI GWGCWC 2 cut(s) 297, 841
BsiSI CCGG 3 cut(s) 227, 255, 433
BslI CCNNNNNNNGG 2 cut(s) 472, 703
BsmAI GTCTC 3 cut(s) 187, 256, 495
BsmBI CGTCTC 1 cut(s) 256
Bsp1286I GDGCHC 2 cut(s) 297, 841
Bsp13I TCCGGA 1 cut(s) 432
Bsp143I GATC 2 cut(s) 301, 408
BspACI CCGC 1 cut(s) 718
BspCNI CTCAG 2 cut(s) 496, 505
BspEI TCCGGA 1 cut(s) 432
BspLI GGNNCC 2 cut(s) 746, 780
BspMI ACCTGC 1 cut(s) 692
BspPI GGATC 1 cut(s) 309
BspQI GCTCTTC 1 cut(s) 285
BspT107I GGYRCC 1 cut(s) 744
BsrI ACTGG 1 cut(s) 551
BssECI CCNNGG 1 cut(s) 697
BssMI GATC 2 cut(s) 301, 408
Bst2UI CCWGG 1 cut(s) 698
Bst4CI ACNGT 4 cut(s) 198, 403, 734, 794
Bst6I CTCTTC 3 cut(s) 285, 326, 551
BstBAI YACGTR 1 cut(s) 60
BstDEI CTNAG 2 cut(s) 492, 504
BstEII GGTNACC 1 cut(s) 448
BstHHI GCGC 1 cut(s) 689
BstKTI GATC 2 cut(s) 304, 411
BstMAI GTCTC 3 cut(s) 187, 256, 495
BstMBI GATC 2 cut(s) 301, 408
BstMWI GCNNNNNNNGC 1 cut(s) 292
BstNI CCWGG 1 cut(s) 698
BstPI GGTNACC 1 cut(s) 448
BstSCI CCNGG 1 cut(s) 696
BstSLI GKGCMC 1 cut(s) 841
BstV1I GCAGC 2 cut(s) 351, 595
BtsI GCAGTG 2 cut(s) 137, 466
BtsIMutI CAGTG 4 cut(s) 137, 408, 466, 739
BveI ACCTGC 1 cut(s) 692
CfoI GCGC 1 cut(s) 689
Cfr13I GGNCC 1 cut(s) 257
Csp6I GTAC 4 cut(s) 61, 207, 496, 760
CviAII CATG 2 cut(s) 245, 269
CviJI RGCY 8 cut(s) 281, 286, 465, 658, 710, 785, 799, 828
CviKI_1 RGCY 8 cut(s) 281, 286, 465, 658, 710, 785, 799, 828
CviQI GTAC 4 cut(s) 61, 207, 496, 760
DdeI CTNAG 2 cut(s) 492, 504
DpnI GATC 2 cut(s) 303, 410
DpnII GATC 2 cut(s) 301, 408
Eam1104I CTCTTC 3 cut(s) 285, 326, 551
EarI CTCTTC 3 cut(s) 285, 326, 551
Eco47I GGWCC 1 cut(s) 257
Eco57I CTGAAG 1 cut(s) 309
Eco91I GGTNACC 1 cut(s) 448
EcoO65I GGTNACC 1 cut(s) 448
EcoRII CCWGG 1 cut(s) 696
Esp3I CGTCTC 1 cut(s) 256
FaeI CATG 2 cut(s) 248, 272
FatI CATG 2 cut(s) 244, 268
FbaI TGATCA 1 cut(s) 408
Fnu4HI GCNGC 3 cut(s) 340, 609, 719
Fsp4HI GCNGC 3 cut(s) 340, 609, 719
FspBI CTAG 1 cut(s) 597
GlaI GCGC 1 cut(s) 688
GluI GCNGC 3 cut(s) 340, 609, 719
HapII CCGG 3 cut(s) 227, 255, 433
HhaI GCGC 1 cut(s) 689
Hin1II CATG 2 cut(s) 248, 272
Hin6I GCGC 1 cut(s) 687
HinP1I GCGC 1 cut(s) 687
HincII GTYRAC 1 cut(s) 589
HindII GTYRAC 1 cut(s) 589
HindIII AAGCTT 1 cut(s) 656
HpaII CCGG 3 cut(s) 227, 255, 433
HphI GGTGA 2 cut(s) 460, 806
Hpy166II GTNNAC 3 cut(s) 63, 589, 839
Hpy188I TCNGA 4 cut(s) 105, 306, 379, 505
Hpy188III TCNNGA 2 cut(s) 412, 433
Hpy8I GTNNAC 3 cut(s) 63, 589, 839
HpyAV CCTTC 4 cut(s) 46, 132, 270, 852
HpyCH4III ACNGT 4 cut(s) 198, 403, 734, 794
HpyCH4IV ACGT 3 cut(s) 59, 603, 819
HpyCH4V TGCA 4 cut(s) 117, 396, 471, 839
HpyF10VI GCNNNNNNNGC 1 cut(s) 292
HpyF3I CTNAG 2 cut(s) 492, 504
HpySE526I ACGT 3 cut(s) 59, 603, 819
Hsp92II CATG 2 cut(s) 248, 272
HspAI GCGC 1 cut(s) 687
Kpn2I TCCGGA 1 cut(s) 432
Ksp22I TGATCA 1 cut(s) 408
Kzo9I GATC 2 cut(s) 301, 408
LguI GCTCTTC 1 cut(s) 285
LmnI GCTCC 1 cut(s) 336
Lsp1109I GCAGC 2 cut(s) 351, 595
LweI GCATC 1 cut(s) 250
MaeI CTAG 1 cut(s) 597
MaeII ACGT 3 cut(s) 59, 603, 819
MaeIII GTNAC 5 cut(s) 158, 448, 599, 679, 788
MalI GATC 2 cut(s) 303, 410
MboI GATC 2 cut(s) 301, 408
MboII GAAGA 7 cut(s) 31, 173, 302, 340, 343, 565, 568
MhlI GDGCHC 2 cut(s) 297, 841
MluCI AATT 5 cut(s) 164, 317, 428, 442, 669
MmeI TCCRAC 1 cut(s) 802
MroI TCCGGA 1 cut(s) 432
MseI TTAA 2 cut(s) 167, 660
MslI CAYNNNNRTG 3 cut(s) 401, 404, 755
MspI CCGG 3 cut(s) 227, 255, 433
MspR9I CCNGG 1 cut(s) 698
MvaI CCWGG 1 cut(s) 698
MwoI GCNNNNNNNGC 1 cut(s) 292
NdeII GATC 2 cut(s) 301, 408
NlaIII CATG 2 cut(s) 248, 272
NlaIV GGNNCC 2 cut(s) 746, 780
NmuCI GTSAC 2 cut(s) 448, 788
OliI CACNNNNGTG 1 cut(s) 401
PciSI GCTCTTC 1 cut(s) 285
PkrI GCNGC 3 cut(s) 341, 610, 720
Ppu21I YACGTR 1 cut(s) 60
Psp1406I AACGTT 1 cut(s) 819
Psp6I CCWGG 1 cut(s) 696
PspEI GGTNACC 1 cut(s) 448
PspGI CCWGG 1 cut(s) 696
PspN4I GGNNCC 2 cut(s) 746, 780
PspPI GGNCC 1 cut(s) 257
RsaI GTAC 4 cut(s) 62, 208, 497, 761
RsaNI GTAC 4 cut(s) 61, 207, 496, 760
RseI CAYNNNNRTG 3 cut(s) 401, 404, 755
SapI GCTCTTC 1 cut(s) 285
SaqAI TTAA 2 cut(s) 167, 660
SatI GCNGC 3 cut(s) 340, 609, 719
Sau3AI GATC 2 cut(s) 301, 408
Sau96I GGNCC 1 cut(s) 257
ScrFI CCNGG 1 cut(s) 698
SduI GDGCHC 2 cut(s) 297, 841
SfaNI GCATC 1 cut(s) 250
SinI GGWCC 1 cut(s) 257
SmiMI CAYNNNNRTG 3 cut(s) 401, 404, 755
SpeI ACTAGT 1 cut(s) 596
Sse9I AATT 5 cut(s) 164, 317, 428, 442, 669
SsiI CCGC 1 cut(s) 718
SspI AATATT 2 cut(s) 223, 418
SspMI CTAG 1 cut(s) 597
StyD4I CCNGG 1 cut(s) 696
TaaI ACNGT 4 cut(s) 198, 403, 734, 794
TaiI ACGT 3 cut(s) 62, 606, 822
TaqI TCGA 2 cut(s) 510, 845
TasI AATT 5 cut(s) 164, 317, 428, 442, 669
TatI WGTACW 2 cut(s) 495, 759
TauI GCSGC 1 cut(s) 721
Tru1I TTAA 2 cut(s) 167, 660
Tru9I TTAA 2 cut(s) 167, 660
TscAI CASTG 4 cut(s) 137, 408, 473, 739
TseFI GTSAC 2 cut(s) 448, 788
TseI GCWGC 2 cut(s) 339, 608
Tsp45I GTSAC 2 cut(s) 448, 788
TspDTI ATGAA 3 cut(s) 227, 257, 363
TspGWI ACGGA 2 cut(s) 39, 253
TspRI CASTG 4 cut(s) 137, 408, 473, 739
VneI GTGCAC 1 cut(s) 837
VpaK11BI GGWCC 1 cut(s) 257
XapI RAATTY 1 cut(s) 669
XspI CTAG 1 cut(s) 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.