Rw6G031440

RNA recognition motif 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0001927
Physical Location & Seq
Reverse (-)
55460861 .. 55461451
591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G031440.1

Sequence Viewer

Length: 336 bp
ATGGATTTCAAGGAGTTTTGGGAAAAAGAGAGGATCTCCAACCTGGGATATGCTTTCGTAAATTTTACCTCCTCTTGTGCTGCACTCAGATTCTATAAGCAATACCACAAATTTGAGTGGCCAATGCCGAAAAACAAAAAGATATGTGAGGTTACTTGCGCCAAAACCCAGGGCAAGGAAGCTTTAACCAAGAAATTCAAGAACAAGATATTTTGGTGTCACAGCAATGAGTACTTGCCGGTGATTTTAGCACCTCCCTGTGATGGTGTTAAGAACTCCGGTCTTGTAATGGTCGGAAAACTTGCCGGGCAACCAAAGATTCTGAAGAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_2

Protein Analysis

111

Amino Acids

12.87

Weight (kDa)

9.64

Isoelectric Point (pI)

35.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_2 PF04059 13 - 67 1e-08 RNA recognition motif 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 41
AcoI YGGCCR 1 cut(s) 119
AcsI RAATTY 3 cut(s) 61, 110, 194
AfaI GTAC 1 cut(s) 233
AfiI CCNNNNNNNGG 2 cut(s) 175, 263
AgsI TTSAA 2 cut(s) 10, 199
AjnI CCWGG 2 cut(s) 42, 168
AluBI AGCT 1 cut(s) 182
AluI AGCT 1 cut(s) 182
AlwI GGATC 1 cut(s) 41
AoxI GGCC 1 cut(s) 119
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 3 cut(s) 61, 110, 194
AspLEI GCGC 1 cut(s) 161
AsuC2I CCSGG 1 cut(s) 307
AsuHPI GGTGA 1 cut(s) 253
BalI TGGCCA 1 cut(s) 121
BbvI GCAGC 1 cut(s) 67
BccI CCATC 1 cut(s) 257
BciT130I CCWGG 2 cut(s) 44, 170
BcnI CCSGG 1 cut(s) 307
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
BmcAI AGTACT 1 cut(s) 233
Bme1390I CCNGG 3 cut(s) 44, 170, 307
BmrFI CCNGG 3 cut(s) 44, 170, 307
BplI GAGNNNNNCTC 2 cut(s) 20, 52
BpuMI CCSGG 1 cut(s) 307
BsaJI CCNNGG 3 cut(s) 43, 168, 169
BsaWI WCCGGW 1 cut(s) 278
Bsc4I CCNNNNNNNGG 2 cut(s) 175, 263
Bse118I RCCGGY 1 cut(s) 238
Bse3DI GCAATG 1 cut(s) 232
BseBI CCWGG 2 cut(s) 44, 170
BseDI CCNNGG 3 cut(s) 43, 168, 169
BseLI CCNNNNNNNGG 2 cut(s) 175, 263
BseMI GCAATG 1 cut(s) 232
BseMII CTCAG 1 cut(s) 100
BseRI GAGGAG 1 cut(s) 61
BseXI GCAGC 1 cut(s) 67
BsgI GTGCAG 1 cut(s) 66
BshFI GGCC 1 cut(s) 121
BsiSI CCGG 3 cut(s) 239, 279, 306
BslI CCNNNNNNNGG 2 cut(s) 175, 263
BsnI GGCC 1 cut(s) 121
Bsp143I GATC 1 cut(s) 33
BspANI GGCC 1 cut(s) 121
BspCNI CTCAG 1 cut(s) 99
BspPI GGATC 1 cut(s) 41
BsrDI GCAATG 1 cut(s) 232
BsrFI RCCGGY 1 cut(s) 238
BssAI RCCGGY 1 cut(s) 238
BssECI CCNNGG 3 cut(s) 43, 168, 169
BssMI GATC 1 cut(s) 33
Bst2UI CCWGG 2 cut(s) 44, 170
BstDEI CTNAG 1 cut(s) 86
BstHHI GCGC 1 cut(s) 161
BstKTI GATC 1 cut(s) 36
BstMBI GATC 1 cut(s) 33
BstNI CCWGG 2 cut(s) 44, 170
BstSCI CCNGG 3 cut(s) 42, 168, 305
BstV1I GCAGC 1 cut(s) 67
BstX2I RGATCY 1 cut(s) 33
BstYI RGATCY 1 cut(s) 33
BsuRI GGCC 1 cut(s) 121
CfoI GCGC 1 cut(s) 161
Cfr10I RCCGGY 1 cut(s) 238
Csp6I GTAC 1 cut(s) 232
CviJI RGCY 2 cut(s) 121, 182
CviKI_1 RGCY 2 cut(s) 121, 182
CviQI GTAC 1 cut(s) 232
DdeI CTNAG 1 cut(s) 86
DpnI GATC 1 cut(s) 35
DpnII GATC 1 cut(s) 33
EaeI YGGCCR 1 cut(s) 119
EcoRII CCWGG 2 cut(s) 42, 168
FaiI YATR 3 cut(s) 51, 96, 145
Fnu4HI GCNGC 1 cut(s) 81
Fsp4HI GCNGC 1 cut(s) 81
GlaI GCGC 1 cut(s) 160
GluI GCNGC 1 cut(s) 81
HaeIII GGCC 1 cut(s) 121
HapII CCGG 3 cut(s) 239, 279, 306
HhaI GCGC 1 cut(s) 161
Hin6I GCGC 1 cut(s) 159
HinP1I GCGC 1 cut(s) 159
HindIII AAGCTT 1 cut(s) 180
HinfI GANTC 2 cut(s) 90, 319
HpaII CCGG 3 cut(s) 239, 279, 306
HphI GGTGA 1 cut(s) 253
Hpy188I TCNGA 3 cut(s) 89, 296, 324
Hpy188III TCNNGA 1 cut(s) 199
HpyCH4V TGCA 1 cut(s) 83
HpyF3I CTNAG 1 cut(s) 86
HspAI GCGC 1 cut(s) 159
Kzo9I GATC 1 cut(s) 33
LpnPI CCDG 8 cut(s) 29, 56, 155, 182, 252, 271, 292, 319
Lsp1109I GCAGC 1 cut(s) 67
MaeIII GTNAC 2 cut(s) 151, 218
MalI GATC 1 cut(s) 35
MboI GATC 1 cut(s) 33
MflI RGATCY 1 cut(s) 33
MlsI TGGCCA 1 cut(s) 121
MluCI AATT 3 cut(s) 61, 110, 194
MluNI TGGCCA 1 cut(s) 121
MmeI TCCRAC 2 cut(s) 63, 274
MnlI CCTC 5 cut(s) 24, 79, 82, 142, 264
Mox20I TGGCCA 1 cut(s) 121
MscI TGGCCA 1 cut(s) 121
MseI TTAA 2 cut(s) 185, 270
MslI CAYNNNNRTG 1 cut(s) 225
Msp20I TGGCCA 1 cut(s) 121
MspI CCGG 3 cut(s) 239, 279, 306
MspR9I CCNGG 3 cut(s) 44, 170, 307
MvaI CCWGG 2 cut(s) 44, 170
NciI CCSGG 1 cut(s) 307
NdeII GATC 1 cut(s) 33
NmuCI GTSAC 1 cut(s) 218
PasI CCCWGGG 1 cut(s) 169
PfeI GAWTC 2 cut(s) 90, 319
PkrI GCNGC 1 cut(s) 82
Psp6I CCWGG 2 cut(s) 42, 168
PspGI CCWGG 2 cut(s) 42, 168
PsuI RGATCY 1 cut(s) 33
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
RseI CAYNNNNRTG 1 cut(s) 225
SaqAI TTAA 2 cut(s) 185, 270
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 1 cut(s) 33
ScaI AGTACT 1 cut(s) 233
ScrFI CCNGG 3 cut(s) 44, 170, 307
SetI ASST 5 cut(s) 45, 71, 153, 184, 256
SmiMI CAYNNNNRTG 1 cut(s) 225
Sse9I AATT 3 cut(s) 61, 110, 194
StyD4I CCNGG 3 cut(s) 42, 168, 305
TasI AATT 3 cut(s) 61, 110, 194
TatI WGTACW 1 cut(s) 231
TfiI GAWTC 2 cut(s) 90, 319
Tru1I TTAA 2 cut(s) 185, 270
Tru9I TTAA 2 cut(s) 185, 270
TseFI GTSAC 1 cut(s) 218
TseI GCWGC 1 cut(s) 80
Tsp45I GTSAC 1 cut(s) 218
XapI RAATTY 3 cut(s) 61, 110, 194
ZrmI AGTACT 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.