FvH4_2g26220

RNA recognition motif 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001927
Physical Location & Seq
Reverse (-)
21084847 .. 21086330
1484 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g26220.t1

Sequence Viewer

Length: 903 bp
ATGTTTCTTCAACCTCCAAGAGAGCCATACCTAATCCCCCAACCATTCTTCTTTCCCAGCAGCCCTTTTGTTTACCAAAACTATGAGCAAGTTCAACCTCATTATTCTCAGGCTCATCTCTACGTTTGTGATCCATTCTATCATGTCTTTCCAGATCATCCCTTTCCACCTTACTATTTTCAGCAGCCGCCAAACCCACCACCCTTAAACCCTAGAGAGCTGCTTCCTCCGCCACGAAGAAACACTCGCATTAGGCCACAGAGGAGCAGGGCAGCTACAACTTCTGGCGTCCGCAAATGGGTGCCAAAAAGGAAACCGGAGCAAACTTCTACCTCCGTTAGCACGAGAAATGCTCAGGAGGGTTCTTCTCAGCTGATTCCATTTCCTGCAAGTCCTGATGAGCAAATAACTTCTACTACAACAACGCTTATGATAAGGAATATCCCAAATCATTTTGGGAGGAGTGATCTAGTGGGTATAGTGAAAGATCATTGCTTGAATGAGAACTTGAACTCTGAGTTGCGGTGTGAACCCACTAAGAAGTCCGAGTTCGATTTTCTCTACTTGCCTATGGATTTCAAGGAGTTCTGGGTAAACAAGAGGATTTCCAACCTGGGATATGCTTTCGTGAATTTCACCTCCTCTGTTGCTGCAATCAGATTCTATAAGCGATACCACCAATTTGAGTGGCCTGTACTGAAAAACAAGAAGATCTGTGTGGTTGCTTGCGCCAAAACCCAGGGCAAGGAAGCTTTAAAGAAGAGTTTCAAGAACAAGAATTTTTGGTGCCACAGCAACGAGTGCTTGCCGGTGATTTTAGTACCTCCATGCGACGGTGTTAAGAAATCCCGTCTTATAACGGTCGGCAAACTCGCCGGACAGCCTAAGATGAAAAGAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_2

Protein Analysis

301

Amino Acids

34.83

Weight (kDa)

9.73

Isoelectric Point (pI)

64.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_2 PF04059 141 - 256 4.4e-16 RNA recognition motif 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 857
AccB1I GGYRCC 2 cut(s) 301, 786
AciI CCGC 4 cut(s) 188, 230, 292, 523
AclWI GGATC 1 cut(s) 125
AcsI RAATTY 2 cut(s) 631, 778
AcyI GRCGYC 1 cut(s) 288
AfaI GTAC 2 cut(s) 696, 822
AfiI CCNNNNNNNGG 3 cut(s) 298, 745, 833
AgsI TTSAA 6 cut(s) 11, 95, 499, 511, 580, 769
AjnI CCWGG 2 cut(s) 612, 738
AluBI AGCT 4 cut(s) 220, 275, 373, 752
AluI AGCT 4 cut(s) 220, 275, 373, 752
AlwI GGATC 1 cut(s) 125
AoxI GGCC 2 cut(s) 254, 689
ApeKI GCWGC 5 cut(s) 60, 184, 220, 272, 650
ApoI RAATTY 2 cut(s) 631, 778
Asp700I GAANNNNTTC 1 cut(s) 764
AspLEI GCGC 1 cut(s) 731
AsuHPI GGTGA 2 cut(s) 628, 823
BanI GGYRCC 2 cut(s) 301, 786
BauI CACGAG 1 cut(s) 343
BbvI GCAGC 5 cut(s) 72, 196, 207, 284, 637
BciT130I CCWGG 2 cut(s) 614, 740
BfaI CTAG 2 cut(s) 213, 470
BglII AGATCT 1 cut(s) 711
BisI GCNGC 6 cut(s) 61, 185, 188, 221, 273, 651
BlsI GCNGC 6 cut(s) 62, 186, 189, 222, 274, 652
Bme1390I CCNGG 2 cut(s) 614, 740
BmiI GGNNCC 2 cut(s) 303, 788
BmrFI CCNGG 2 cut(s) 614, 740
BplI GAGNNNNNCTC 2 cut(s) 337, 369
Bpu10I CCTNAGC 1 cut(s) 354
BsaHI GRCGYC 1 cut(s) 288
BsaJI CCNNGG 3 cut(s) 613, 738, 739
BsaWI WCCGGW 1 cut(s) 316
Bsc4I CCNNNNNNNGG 3 cut(s) 298, 745, 833
Bse118I RCCGGY 1 cut(s) 808
Bse3DI GCAATG 1 cut(s) 490
BseBI CCWGG 2 cut(s) 614, 740
BseDI CCNNGG 3 cut(s) 613, 738, 739
BseGI GGATG 1 cut(s) 157
BseLI CCNNNNNNNGG 3 cut(s) 298, 745, 833
BseMI GCAATG 1 cut(s) 490
BseMII CTCAG 4 cut(s) 122, 368, 383, 507
BseRI GAGGAG 3 cut(s) 277, 475, 631
BseXI GCAGC 5 cut(s) 72, 196, 207, 284, 637
BseYI CCCAGC 1 cut(s) 56
Bsh1285I CGRYCG 1 cut(s) 864
BshFI GGCC 2 cut(s) 256, 691
BshNI GGYRCC 2 cut(s) 301, 786
BsiEI CGRYCG 1 cut(s) 864
BsiSI CCGG 3 cut(s) 317, 809, 876
BslI CCNNNNNNNGG 3 cut(s) 298, 745, 833
BsnI GGCC 2 cut(s) 256, 691
Bsp143I GATC 5 cut(s) 130, 154, 466, 487, 711
BspACI CCGC 4 cut(s) 188, 230, 292, 523
BspANI GGCC 2 cut(s) 256, 691
BspCNI CTCAG 4 cut(s) 121, 367, 382, 508
BspLI GGNNCC 2 cut(s) 303, 788
BspPI GGATC 1 cut(s) 125
BspT107I GGYRCC 2 cut(s) 301, 786
BsrDI GCAATG 1 cut(s) 490
BsrFI RCCGGY 1 cut(s) 808
BssAI RCCGGY 1 cut(s) 808
BssECI CCNNGG 3 cut(s) 613, 738, 739
BssMI GATC 5 cut(s) 130, 154, 466, 487, 711
BssNI GRCGYC 1 cut(s) 288
BssSI CACGAG 1 cut(s) 343
Bst2BI CACGAG 1 cut(s) 343
Bst2UI CCWGG 2 cut(s) 614, 740
Bst4CI ACNGT 2 cut(s) 836, 862
Bst6I CTCTTC 1 cut(s) 755
BstACI GRCGYC 1 cut(s) 288
BstAPI GCANNNNNTGC 1 cut(s) 801
BstC8I GCNNGC 2 cut(s) 727, 806
BstDEI CTNAG 6 cut(s) 108, 354, 369, 516, 537, 885
BstF5I GGATG 1 cut(s) 157
BstHHI GCGC 1 cut(s) 731
BstKTI GATC 5 cut(s) 133, 157, 469, 490, 714
BstMBI GATC 5 cut(s) 130, 154, 466, 487, 711
BstMCI CGRYCG 1 cut(s) 864
BstMWI GCNNNNNNNGC 2 cut(s) 229, 801
BstNI CCWGG 2 cut(s) 614, 740
BstSCI CCNGG 2 cut(s) 612, 738
BstV1I GCAGC 5 cut(s) 72, 196, 207, 284, 637
BstX2I RGATCY 1 cut(s) 711
BstYI RGATCY 1 cut(s) 711
BsuRI GGCC 2 cut(s) 256, 691
BtsCI GGATG 1 cut(s) 157
Cac8I GCNNGC 2 cut(s) 727, 806
CfoI GCGC 1 cut(s) 731
Cfr10I RCCGGY 1 cut(s) 808
CseI GACGC 1 cut(s) 277
Csp6I GTAC 2 cut(s) 695, 821
CspCI CAANNNNNGTGG 2 cut(s) 668, 703
CviAII CATG 2 cut(s) 143, 828
CviQI GTAC 2 cut(s) 695, 821
DdeI CTNAG 6 cut(s) 108, 354, 369, 516, 537, 885
DpnI GATC 5 cut(s) 132, 156, 468, 489, 713
DpnII GATC 5 cut(s) 130, 154, 466, 487, 711
DraI TTTAAA 1 cut(s) 756
Eam1104I CTCTTC 1 cut(s) 755
EarI CTCTTC 1 cut(s) 755
EciI GGCGGA 1 cut(s) 219
EcoRII CCWGG 2 cut(s) 612, 738
FaeI CATG 2 cut(s) 146, 831
FatI CATG 2 cut(s) 142, 827
Fnu4HI GCNGC 6 cut(s) 61, 185, 188, 221, 273, 651
FokI GGATG 1 cut(s) 144
Fsp4HI GCNGC 6 cut(s) 61, 185, 188, 221, 273, 651
FspBI CTAG 2 cut(s) 213, 470
GlaI GCGC 1 cut(s) 730
GluI GCNGC 6 cut(s) 61, 185, 188, 221, 273, 651
GsaI CCCAGC 1 cut(s) 60
HaeIII GGCC 2 cut(s) 256, 691
HapII CCGG 3 cut(s) 317, 809, 876
HgaI GACGC 1 cut(s) 277
HhaI GCGC 1 cut(s) 731
Hin1I GRCGYC 1 cut(s) 288
Hin1II CATG 2 cut(s) 146, 831
Hin6I GCGC 1 cut(s) 729
HinP1I GCGC 1 cut(s) 729
HindIII AAGCTT 1 cut(s) 750
HinfI GANTC 2 cut(s) 376, 660
HpaII CCGG 3 cut(s) 317, 809, 876
HphI GGTGA 2 cut(s) 628, 823
Hpy166II GTNNAC 3 cut(s) 73, 530, 595
Hpy188I TCNGA 3 cut(s) 517, 547, 659
Hpy188III TCNNGA 5 cut(s) 152, 356, 395, 628, 769
Hpy8I GTNNAC 3 cut(s) 73, 530, 595
Hpy99I CGWCG 1 cut(s) 836
HpyCH4III ACNGT 2 cut(s) 836, 862
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 2 cut(s) 389, 653
HpyF10VI GCNNNNNNNGC 2 cut(s) 229, 801
HpyF3I CTNAG 6 cut(s) 108, 354, 369, 516, 537, 885
HpySE526I ACGT 1 cut(s) 123
Hsp92I GRCGYC 1 cut(s) 288
Hsp92II CATG 2 cut(s) 146, 831
HspAI GCGC 1 cut(s) 729
Kzo9I GATC 5 cut(s) 130, 154, 466, 487, 711
LmnI GCTCC 2 cut(s) 264, 319
Lsp1109I GCAGC 5 cut(s) 72, 196, 207, 284, 637
MaeI CTAG 2 cut(s) 213, 470
MaeII ACGT 1 cut(s) 123
MalI GATC 5 cut(s) 132, 156, 468, 489, 713
MboI GATC 5 cut(s) 130, 154, 466, 487, 711
MboII GAAGA 5 cut(s) 40, 249, 357, 721, 772
MflI RGATCY 1 cut(s) 711
MluCI AATT 4 cut(s) 631, 680, 778, 898
MmeI TCCRAC 1 cut(s) 633
MroXI GAANNNNTTC 1 cut(s) 764
MseI TTAA 3 cut(s) 206, 755, 840
MspA1I CMGCKG 1 cut(s) 373
MspI CCGG 3 cut(s) 317, 809, 876
MspR9I CCNGG 2 cut(s) 614, 740
MvaI CCWGG 2 cut(s) 614, 740
MwoI GCNNNNNNNGC 2 cut(s) 229, 801
NdeII GATC 5 cut(s) 130, 154, 466, 487, 711
NlaIII CATG 2 cut(s) 146, 831
NlaIV GGNNCC 2 cut(s) 303, 788
PasI CCCWGGG 1 cut(s) 739
PdmI GAANNNNTTC 1 cut(s) 764
PfeI GAWTC 2 cut(s) 376, 660
PkrI GCNGC 6 cut(s) 62, 186, 189, 222, 274, 652
PsiI TTATAA 1 cut(s) 857
Psp6I CCWGG 2 cut(s) 612, 738
PspFI CCCAGC 1 cut(s) 56
PspGI CCWGG 2 cut(s) 612, 738
PspN4I GGNNCC 2 cut(s) 303, 788
PsuI RGATCY 1 cut(s) 711
PvuII CAGCTG 1 cut(s) 373
RsaI GTAC 2 cut(s) 696, 822
RsaNI GTAC 2 cut(s) 695, 821
SaqAI TTAA 3 cut(s) 206, 755, 840
SatI GCNGC 6 cut(s) 61, 185, 188, 221, 273, 651
Sau3AI GATC 5 cut(s) 130, 154, 466, 487, 711
ScrFI CCNGG 2 cut(s) 614, 740
Sse9I AATT 4 cut(s) 631, 680, 778, 898
SsiI CCGC 4 cut(s) 188, 230, 292, 523
SspMI CTAG 2 cut(s) 213, 470
StyD4I CCNGG 2 cut(s) 612, 738
TaaI ACNGT 2 cut(s) 836, 862
TaiI ACGT 1 cut(s) 126
TaqI TCGA 1 cut(s) 552
TasI AATT 4 cut(s) 631, 680, 778, 898
TatI WGTACW 1 cut(s) 694
TauI GCSGC 1 cut(s) 190
TfiI GAWTC 2 cut(s) 376, 660
Tru1I TTAA 3 cut(s) 206, 755, 840
Tru9I TTAA 3 cut(s) 206, 755, 840
TseI GCWGC 5 cut(s) 60, 184, 220, 272, 650
TspGWI ACGGA 1 cut(s) 325
XapI RAATTY 2 cut(s) 631, 778
XmnI GAANNNNTTC 1 cut(s) 764
XspI CTAG 2 cut(s) 213, 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.