Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001927

Physical Location & Seq

Genomic Coordinates Forward (+)

41708497 .. 41710680

Gene Structure 2184 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G504600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGTCCTCCAAAGCTCTGAACCCTAAAGCTCCTCCATTTTTCTTGAACAAAACTGAAACCTATGTGTACAAAAGATATTTCTATCCTCTTCAACCTCCTTATGCTTTTCAAAATCTTCATCAACCCATTTACTATTTTTGTCACTGGAGACAACCCAACTTTCCGAACCCAAAAACAATTGTGAGTCTCAAACAGAACATGGAAGCAGCAGCAGCAGCAGCCAAAACTACGAAAAGGGTACCGAGAGAGAATGTTTACAAGGGGAAGAGGGGATTTGTACCTGCGAGGCTGAGGAAGTCATTGAAAGAGCTTGGGGATGATCACCAAGTGGTAGGTGCTTGTCGGGTTGTCAAATGGTTGCCCAAGAAGGAAGTCCTGGAGGCCGAGAAGGGTAAAAAGGCGTGGCGTCAGAGGATTATAAGGGGAACCAAAGCCCGACTTGTGAATGCTGGTTGCGGTGATGTAATTCCTTTCCCTTCAAGTCCTGATGTGCAAAATGGCTCAAGCACTACCACCATCATGGTCAAAAACATCCCCAACCAATTTCAGAGGGGTGATCTGCTGAGCTTCCTCAGTAAGCACTGCTGCGCAGAGAACATCAAGGCCTGCATGAACTCTGATGATCCCATTAAATCCGAGTTTGATTTCGTGTATCTTCCCATGGACTTTCAGAGGGCAGCCAATCTGGGCTATGCCTTTGTGAATTTCACCAGTACTGTTGCGGCCTCGAGATTTTACAAGAATTTCCACGAGAAAATGTGGGAAGAGGTCAGCAGCAACAACAAGACCCGTGAAGTAACCTGTGCCAAACTTCAGGGTTTGGAAGCTCTGAGGGGCCATTTCAAGAAGAAAGCGTTTTGGTGTGACACTGAGGAGTATTTGCCTGTAATCTTAGAGCCTCCATGCGATGGTGGGGTTGAGCTGCCCAATCTCAAAACTGTGGGGAAATGCGTAGGGGTACCCTCTTCCTTTGGGAACTCTCCTACACATATGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_2

Protein Analysis

333

Amino Acids

37.64

Weight (kDa)

9.53

Isoelectric Point (pI)

47.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G37140 AT1G37140
fragaria_vesca	FvH4_2g26190 FvH4_2g26200 FvH4_2g26210 FvH4_2g26220
malus_domestica	MD08G1171900.v1.1 MD08G1172100.v1.1 MD15G1357500.v1.1
prunus_persica	Prupe.1G504600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0294631 RchiOBHm_Chr6g0294781 RchiOBHm_Chr6g0294791
rosa_laevigata	RLG00000011840 RLG00000011841 RLG00000011842 RLG00000011853
rosa_multiflora	Rmu_sc0001331.1_g000005 Rmu_sc0001331.1_g000006 Rmu_sc0006264.1_g000009
rosa_roxburghii	Rroxscaffold_7G00173010 Rroxscaffold_7G00173020 Rroxscaffold_7G00173030 Rroxscaffold_7G00173150
rosa_rugosa	Rorug06G0246400 Rorug06G0246900 Rorug06G0246900 Rorug06G0246900
rosa_samantha	Rh6AG358800 Rh6AG360300 Rh6AG360400 Rh6BG366000 Rh6BG366900 Rh6BG367000 Rh6BG367100 Rh6CG372600 Rh6CG372800 Rh6CG374000 Rh6CG374100 Rh6DG359400 Rh6DG359700 Rh6DG360600 Rh6DG360700
rosa_wichuraiana	Rw6G031310 Rw6G031430 Rw6G031440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	419
Acc16I	TGCGCA	1 cut(s)	589
Acc36I	ACCTGC	1 cut(s)	289
Acc65I	GGTACC	2 cut(s)	238, 958
AccB1I	GGYRCC	2 cut(s)	238, 958
AccB7I	CCANNNNNTGG	1 cut(s)	908
AciI	CCGC	2 cut(s)	456, 722
AclWI	GGATC	1 cut(s)	617
AcsI	RAATTY	2 cut(s)	703, 742
AcuI	CTGAAG	1 cut(s)	797
AcyI	GRCGYC	1 cut(s)	406
AdeI	CACNNNGTG	1 cut(s)	328
AfaI	GTAC	5 cut(s)	68, 240, 279, 715, 960
AfiI	CCNNNNNNNGG	1 cut(s)	908
AgsI	TTSAA	6 cut(s)	46, 92, 110, 304, 480, 844
AjnI	CCWGG	1 cut(s)	375
AluBI	AGCT	6 cut(s)	14, 29, 310, 567, 827, 922
AluI	AGCT	6 cut(s)	14, 29, 310, 567, 827, 922
Alw26I	GTCTC	2 cut(s)	142, 191
AlwI	GGATC	1 cut(s)	617
Ama87I	CYCGRG	1 cut(s)	727
AoxI	GGCC	4 cut(s)	381, 603, 723, 835
ApeKI	GCWGC	9 cut(s)	206, 209, 212, 215, 218, 585, 677, 774, 922
ApoI	RAATTY	2 cut(s)	703, 742
Asp718I	GGTACC	2 cut(s)	238, 958
AspLEI	GCGC	1 cut(s)	590
AspS9I	GGNCC	1 cut(s)	835
AsuHPI	GGTGA	4 cut(s)	314, 470, 566, 700
AvaI	CYCGRG	1 cut(s)	727
BanI	GGYRCC	2 cut(s)	238, 958
BauI	CACGAG	1 cut(s)	749
BbvCI	CCTCAGC	1 cut(s)	290
BbvI	GCAGC	9 cut(s)	218, 221, 224, 227, 230, 572, 689, 786, 909
BccI	CCATC	2 cut(s)	524, 902
BciT130I	CCWGG	1 cut(s)	377
BclI	TGATCA	1 cut(s)	319
BcoDI	GTCTC	2 cut(s)	142, 191
BfuAI	ACCTGC	1 cut(s)	289
BlpI	GCTNAGC	1 cut(s)	563
BmcAI	AGTACT	1 cut(s)	715
Bme1390I	CCNGG	1 cut(s)	377
BmeT110I	CYCGRG	1 cut(s)	727
BmgT120I	GGNCC	1 cut(s)	835
BmiI	GGNNCC	4 cut(s)	240, 427, 836, 960
BmrFI	CCNGG	1 cut(s)	377
BpmI	CTGGAG	2 cut(s)	166, 398
Bpu10I	CCTNAGC	1 cut(s)	290
Bpu1102I	GCTNAGC	1 cut(s)	563
BpuEI	CTTGAG	1 cut(s)	487
BsaHI	GRCGYC	1 cut(s)	406
BsaJI	CCNNGG	1 cut(s)	660
Bsc4I	CCNNNNNNNGG	1 cut(s)	908
Bse1I	ACTGG	2 cut(s)	149, 711
BseBI	CCWGG	1 cut(s)	377
BseDI	CCNNGG	1 cut(s)	660
BseGI	GGATG	2 cut(s)	322, 531
BseLI	CCNNNNNNNGG	1 cut(s)	908
BseMII	CTCAG	5 cut(s)	281, 554, 586, 821, 861
BseNI	ACTGG	2 cut(s)	149, 711
BseRI	GAGGAG	2 cut(s)	21, 887
BseXI	GCAGC	9 cut(s)	218, 221, 224, 227, 230, 572, 689, 786, 909
BshFI	GGCC	4 cut(s)	383, 605, 725, 837
BshNI	GGYRCC	2 cut(s)	238, 958
BsiHKCI	CYCGRG	1 cut(s)	727
BslI	CCNNNNNNNGG	1 cut(s)	908
BsmAI	GTCTC	2 cut(s)	142, 191
BsmI	GAATGC	1 cut(s)	451
BsnI	GGCC	4 cut(s)	383, 605, 725, 837
BsoBI	CYCGRG	1 cut(s)	727
Bsp1407I	TGTACA	1 cut(s)	66
Bsp143I	GATC	3 cut(s)	319, 556, 622
Bsp1720I	GCTNAGC	1 cut(s)	563
Bsp19I	CCATGG	1 cut(s)	660
BspACI	CCGC	2 cut(s)	456, 722
BspANI	GGCC	4 cut(s)	383, 605, 725, 837
BspCNI	CTCAG	5 cut(s)	282, 555, 585, 822, 862
BspLI	GGNNCC	4 cut(s)	240, 427, 836, 960
BspMI	ACCTGC	1 cut(s)	289
BspPI	GGATC	1 cut(s)	617
BspT107I	GGYRCC	2 cut(s)	238, 958
BsrGI	TGTACA	1 cut(s)	66
BsrI	ACTGG	2 cut(s)	149, 711
BssECI	CCNNGG	1 cut(s)	660
BssMI	GATC	3 cut(s)	319, 556, 622
BssNI	GRCGYC	1 cut(s)	406
BssSI	CACGAG	1 cut(s)	749
BssT1I	CCWWGG	1 cut(s)	660
Bst2BI	CACGAG	1 cut(s)	749
Bst2UI	CCWGG	1 cut(s)	377
Bst4CI	ACNGT	2 cut(s)	718, 940
Bst6I	CTCTTC	4 cut(s)	93, 260, 759, 970
BstACI	GRCGYC	1 cut(s)	406
BstAUI	TGTACA	1 cut(s)	66
BstC8I	GCNNGC	1 cut(s)	607
BstDEI	CTNAG	6 cut(s)	290, 563, 572, 830, 870, 892
BstDSI	CCRYGG	1 cut(s)	660
BstF5I	GGATG	2 cut(s)	322, 531
BstHHI	GCGC	1 cut(s)	590
BstKTI	GATC	3 cut(s)	322, 559, 625
BstMAI	GTCTC	2 cut(s)	142, 191
BstMBI	GATC	3 cut(s)	319, 556, 622
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 215, 218
BstNI	CCWGG	1 cut(s)	377
BstSCI	CCNGG	1 cut(s)	375
BstV1I	GCAGC	9 cut(s)	218, 221, 224, 227, 230, 572, 689, 786, 909
BstXI	CCANNNNNNTGG	1 cut(s)	520
BsuRI	GGCC	4 cut(s)	383, 605, 725, 837
BtgI	CCRYGG	1 cut(s)	660
BtgZI	GCGATG	1 cut(s)	921
BtsCI	GGATG	2 cut(s)	322, 531
BtsI	GCAGTG	1 cut(s)	580
BtsIMutI	CAGTG	3 cut(s)	142, 580, 867
BveI	ACCTGC	1 cut(s)	289
Cac8I	GCNNGC	1 cut(s)	607
CfoI	GCGC	1 cut(s)	590
Cfr13I	GGNCC	1 cut(s)	835
CseI	GACGC	1 cut(s)	395
Csp6I	GTAC	5 cut(s)	67, 239, 278, 714, 959
CviAII	CATG	5 cut(s)	199, 520, 610, 661, 903
CviQI	GTAC	5 cut(s)	67, 239, 278, 714, 959
DdeI	CTNAG	6 cut(s)	290, 563, 572, 830, 870, 892
DpnI	GATC	3 cut(s)	321, 558, 624
DpnII	GATC	3 cut(s)	319, 556, 622
DraIII	CACNNNGTG	1 cut(s)	328
Eam1104I	CTCTTC	4 cut(s)	93, 260, 759, 970
EarI	CTCTTC	4 cut(s)	93, 260, 759, 970
Eco130I	CCWWGG	1 cut(s)	660
Eco147I	AGGCCT	1 cut(s)	605
Eco57I	CTGAAG	1 cut(s)	797
Eco88I	CYCGRG	1 cut(s)	727
EcoRII	CCWGG	1 cut(s)	375
EcoT14I	CCWWGG	1 cut(s)	660
ErhI	CCWWGG	1 cut(s)	660
FaeI	CATG	5 cut(s)	202, 523, 613, 664, 906
FalI	AAGNNNNNCTT	2 cut(s)	423, 455
FatI	CATG	5 cut(s)	198, 519, 609, 660, 902
FauNDI	CATATG	1 cut(s)	990
FbaI	TGATCA	1 cut(s)	319
FokI	GGATG	2 cut(s)	329, 518
FspI	TGCGCA	1 cut(s)	589
GlaI	GCGC	1 cut(s)	589
GsuI	CTGGAG	2 cut(s)	166, 398
HaeIII	GGCC	4 cut(s)	383, 605, 725, 837
HgaI	GACGC	1 cut(s)	395
HhaI	GCGC	1 cut(s)	590
Hin1I	GRCGYC	1 cut(s)	406
Hin1II	CATG	5 cut(s)	202, 523, 613, 664, 906
Hin6I	GCGC	1 cut(s)	588
HinP1I	GCGC	1 cut(s)	588
HinfI	GANTC	1 cut(s)	184
HphI	GGTGA	4 cut(s)	314, 470, 566, 700
Hpy166II	GTNNAC	2 cut(s)	67, 256
Hpy188I	TCNGA	8 cut(s)	18, 165, 411, 549, 619, 637, 672, 831
Hpy188III	TCNNGA	4 cut(s)	43, 485, 729, 844
Hpy8I	GTNNAC	2 cut(s)	67, 256
HpyAV	CCTTC	3 cut(s)	361, 382, 486
HpyCH4III	ACNGT	2 cut(s)	718, 940
HpyCH4V	TGCA	2 cut(s)	493, 609
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 215, 218
HpyF3I	CTNAG	6 cut(s)	290, 563, 572, 830, 870, 892
Hsp92I	GRCGYC	1 cut(s)	406
Hsp92II	CATG	5 cut(s)	202, 523, 613, 664, 906
HspAI	GCGC	1 cut(s)	588
KpnI	GGTACC	2 cut(s)	242, 962
Ksp22I	TGATCA	1 cut(s)	319
Kzo9I	GATC	3 cut(s)	319, 556, 622
LmnI	GCTCC	1 cut(s)	34
Lsp1109I	GCAGC	9 cut(s)	218, 221, 224, 227, 230, 572, 689, 786, 909
MaeIII	GTNAC	3 cut(s)	140, 796, 863
MalI	GATC	3 cut(s)	321, 558, 624
MboI	GATC	3 cut(s)	319, 556, 622
MboII	GAAGA	7 cut(s)	80, 107, 277, 647, 776, 859, 957
MfeI	CAATTG	1 cut(s)	177
MluCI	AATT	5 cut(s)	177, 465, 542, 703, 742
MlyI	GAGTC	1 cut(s)	193
MseI	TTAA	2 cut(s)	630, 997
MslI	CAYNNNNRTG	1 cut(s)	518
MspR9I	CCNGG	1 cut(s)	377
MunI	CAATTG	1 cut(s)	177
Mva1269I	GAATGC	1 cut(s)	451
MvaI	CCWGG	1 cut(s)	377
MwoI	GCNNNNNNNGC	3 cut(s)	212, 215, 218
NcoI	CCATGG	1 cut(s)	660
NdeI	CATATG	1 cut(s)	990
NdeII	GATC	3 cut(s)	319, 556, 622
NlaIII	CATG	5 cut(s)	202, 523, 613, 664, 906
NlaIV	GGNNCC	4 cut(s)	240, 427, 836, 960
NmeAIII	GCCGAG	1 cut(s)	409
NmuCI	GTSAC	2 cut(s)	140, 863
NsbI	TGCGCA	1 cut(s)	589
PaeR7I	CTCGAG	1 cut(s)	727
PceI	AGGCCT	1 cut(s)	605
PctI	GAATGC	1 cut(s)	451
PflMI	CCANNNNNTGG	1 cut(s)	908
PfoI	TCCNGGA	1 cut(s)	375
PleI	GAGTC	1 cut(s)	192
PpsI	GAGTC	1 cut(s)	192
PsiI	TTATAA	1 cut(s)	419
Psp6I	CCWGG	1 cut(s)	375
PspGI	CCWGG	1 cut(s)	375
PspN4I	GGNNCC	4 cut(s)	240, 427, 836, 960
PspPI	GGNCC	1 cut(s)	835
RsaI	GTAC	5 cut(s)	68, 240, 279, 715, 960
RsaNI	GTAC	5 cut(s)	67, 239, 278, 714, 959
RseI	CAYNNNNRTG	1 cut(s)	518
SaqAI	TTAA	2 cut(s)	630, 997
Sau3AI	GATC	3 cut(s)	319, 556, 622
Sau96I	GGNCC	1 cut(s)	835
ScaI	AGTACT	1 cut(s)	715
SchI	GAGTC	1 cut(s)	193
ScrFI	CCNGG	1 cut(s)	377
Sfr274I	CTCGAG	1 cut(s)	727
SlaI	CTCGAG	1 cut(s)	727
SmiMI	CAYNNNNRTG	1 cut(s)	518
SmlI	CTYRAG	2 cut(s)	502, 727
SmoI	CTYRAG	2 cut(s)	502, 727
Sse9I	AATT	5 cut(s)	177, 465, 542, 703, 742
SseBI	AGGCCT	1 cut(s)	605
SsiI	CCGC	2 cut(s)	456, 722
StuI	AGGCCT	1 cut(s)	605
StyD4I	CCNGG	1 cut(s)	375
StyI	CCWWGG	1 cut(s)	660
TaaI	ACNGT	2 cut(s)	718, 940
TaqI	TCGA	1 cut(s)	728
TasI	AATT	5 cut(s)	177, 465, 542, 703, 742
TatI	WGTACW	2 cut(s)	66, 713
TauI	GCSGC	1 cut(s)	725
Tru1I	TTAA	2 cut(s)	630, 997
Tru9I	TTAA	2 cut(s)	630, 997
TscAI	CASTG	3 cut(s)	149, 587, 874
TseFI	GTSAC	2 cut(s)	140, 863
TseI	GCWGC	9 cut(s)	206, 209, 212, 215, 218, 585, 677, 774, 922
Tsp45I	GTSAC	2 cut(s)	140, 863
TspDTI	ATGAA	2 cut(s)	107, 626
TspRI	CASTG	3 cut(s)	149, 587, 874
Van91I	CCANNNNNTGG	1 cut(s)	908
XapI	RAATTY	2 cut(s)	703, 742
XhoI	CTCGAG	1 cut(s)	727
ZrmI	AGTACT	1 cut(s)	715

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.