Rh6AG358800

RNA recognition motif 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001927
Physical Location & Seq
Reverse (-)
55755038 .. 55756454
1417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG358800.1

Sequence Viewer

Length: 696 bp
ATGGATAATCTTCCAAGAGTGAGACAGTTTTCCCGTACTATGAACCACAATATTCCGGTCAGGCGTAAGCATCATGTCGTCTCTGGTCCTTCCGTTCATGTATGGAAAGCCAAGCCTGAAGATCACAAGGATCGGAGGAACGACAAATTATTGGAGAAGAAGAGGAGCAGCAAAGGGAAAGTCATTCCTTTTCCTTTATGTTCATCTGACCAGAAACCATTTTGCACCACAGTGATGATCAAGAATATTCCCAATCAATTCCGGAGGACTAATTTGGTGACCATATTGAGAAGCCACTGCAAGGAGGAAAACAAAAAGTCTGAGTACAAATCTGAGTTCGATTTTGTGTATTTGCCAATGGATTTCCAGCAATACTGGGAGAAGAAGAGGGTTGTAAATCTGGGTTATGCCTTTGTCAACTTCACCAGTTACGTTGCTGCTTTGAGGTTCTTTCAATACTACCACAACCGAGAATGGAATGTGAAGCTTAACAACAAAATTTGTCAAGTTACCTGCGCCAAAATCCAGGGAAAGGAAGCTCTTATGCGGCGATTTGAGAACAGTGTATTCTGGTGCCACACCGATATGTACTTGCCTGTGGTTTTGGAACCAGCCTGTGATGGTGAGCTTCTGCCCAACCTCATCAGCGTTGGACGCCGTGTTTGTGCACCTTCGAGGAAACCCAGAACAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_2

Protein Analysis

231

Amino Acids

27.4

Weight (kDa)

9.9

Isoelectric Point (pI)

57.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_2 PF04059 76 - 185 1.2e-18 RNA recognition motif 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 521
AccB1I GGYRCC 1 cut(s) 573
AccIII TCCGGA 1 cut(s) 261
AciI CCGC 1 cut(s) 547
AclWI GGATC 1 cut(s) 138
AcsI RAATTY 1 cut(s) 498
AcuI CTGAAG 1 cut(s) 138
AcyI GRCGYC 1 cut(s) 655
AfaI GTAC 3 cut(s) 37, 326, 590
AfiI CCNNNNNNNGG 2 cut(s) 301, 532
AgsI TTSAA 1 cut(s) 455
AjnI CCWGG 1 cut(s) 525
AleI CACNNNNGTG 1 cut(s) 230
AluBI AGCT 3 cut(s) 487, 539, 628
AluI AGCT 3 cut(s) 487, 539, 628
Alw21I GWGCWC 1 cut(s) 670
Alw26I GTCTC 2 cut(s) 16, 85
Alw44I GTGCAC 1 cut(s) 666
AlwI GGATC 1 cut(s) 138
Aor13HI TCCGGA 1 cut(s) 261
ApaLI GTGCAC 1 cut(s) 666
ApeKI GCWGC 2 cut(s) 168, 437
ApoI RAATTY 1 cut(s) 498
ArsI GACNNNNNNTTYG 4 cut(s) 165, 197, 645, 677
AspLEI GCGC 1 cut(s) 518
AspS9I GGNCC 1 cut(s) 86
AsuHPI GGTGA 3 cut(s) 289, 415, 635
AvaII GGWCC 1 cut(s) 86
BaeGI GKGCMC 1 cut(s) 670
BanI GGYRCC 1 cut(s) 573
Bbv12I GWGCWC 1 cut(s) 670
BbvI GCAGC 2 cut(s) 180, 424
BccI CCATC 1 cut(s) 614
BceAI ACGGC 1 cut(s) 642
BciT130I CCWGG 1 cut(s) 527
BclI TGATCA 1 cut(s) 237
BcoDI GTCTC 2 cut(s) 16, 85
BfuAI ACCTGC 1 cut(s) 521
BisI GCNGC 3 cut(s) 169, 438, 548
BlsI GCNGC 3 cut(s) 170, 439, 549
Bme1390I CCNGG 1 cut(s) 527
Bme18I GGWCC 1 cut(s) 86
BmgT120I GGNCC 1 cut(s) 86
BmiI GGNNCC 2 cut(s) 575, 609
BmrFI CCNGG 1 cut(s) 527
BmrI ACTGGG 1 cut(s) 385
BmsI GCATC 1 cut(s) 79
BmuI ACTGGG 1 cut(s) 385
BsaHI GRCGYC 1 cut(s) 655
BsaJI CCNNGG 1 cut(s) 526
BsaWI WCCGGW 2 cut(s) 55, 261
Bsc4I CCNNNNNNNGG 2 cut(s) 301, 532
Bse1I ACTGG 2 cut(s) 380, 426
BseAI TCCGGA 1 cut(s) 261
BseBI CCWGG 1 cut(s) 527
BseDI CCNNGG 1 cut(s) 526
BseLI CCNNNNNNNGG 2 cut(s) 301, 532
BseMII CTCAG 2 cut(s) 312, 324
BseNI ACTGG 2 cut(s) 380, 426
BseRI GAGGAG 1 cut(s) 178
BseSI GKGCMC 1 cut(s) 670
BseXI GCAGC 2 cut(s) 180, 424
BshNI GGYRCC 1 cut(s) 573
BsiHKAI GWGCWC 1 cut(s) 670
BsiSI CCGG 2 cut(s) 56, 262
BslI CCNNNNNNNGG 2 cut(s) 301, 532
BsmAI GTCTC 2 cut(s) 16, 85
BsmBI CGTCTC 1 cut(s) 85
Bsp1286I GDGCHC 1 cut(s) 670
Bsp13I TCCGGA 1 cut(s) 261
Bsp143I GATC 3 cut(s) 121, 130, 237
BspACI CCGC 1 cut(s) 547
BspCNI CTCAG 2 cut(s) 313, 325
BspEI TCCGGA 1 cut(s) 261
BspLI GGNNCC 2 cut(s) 575, 609
BspMI ACCTGC 1 cut(s) 521
BspPI GGATC 1 cut(s) 138
BspT107I GGYRCC 1 cut(s) 573
BsrI ACTGG 2 cut(s) 380, 426
BssECI CCNNGG 1 cut(s) 526
BssMI GATC 3 cut(s) 121, 130, 237
BssNI GRCGYC 1 cut(s) 655
Bst2UI CCWGG 1 cut(s) 527
Bst4CI ACNGT 3 cut(s) 27, 232, 563
Bst6I CTCTTC 2 cut(s) 155, 380
BstACI GRCGYC 1 cut(s) 655
BstDEI CTNAG 2 cut(s) 321, 333
BstEII GGTNACC 1 cut(s) 277
BstHHI GCGC 1 cut(s) 518
BstKTI GATC 3 cut(s) 124, 133, 240
BstMAI GTCTC 2 cut(s) 16, 85
BstMBI GATC 3 cut(s) 121, 130, 237
BstMWI GCNNNNNNNGC 1 cut(s) 654
BstNI CCWGG 1 cut(s) 527
BstPI GGTNACC 1 cut(s) 277
BstSCI CCNGG 1 cut(s) 525
BstSLI GKGCMC 1 cut(s) 670
BstV1I GCAGC 2 cut(s) 180, 424
BtsI GCAGTG 1 cut(s) 295
BtsIMutI CAGTG 3 cut(s) 237, 295, 568
BveI ACCTGC 1 cut(s) 521
CfoI GCGC 1 cut(s) 518
Cfr13I GGNCC 1 cut(s) 86
CseI GACGC 1 cut(s) 663
Csp6I GTAC 3 cut(s) 36, 325, 589
CviAII CATG 2 cut(s) 74, 98
CviJI RGCY 7 cut(s) 110, 115, 294, 487, 539, 614, 628
CviKI_1 RGCY 7 cut(s) 110, 115, 294, 487, 539, 614, 628
CviQI GTAC 3 cut(s) 36, 325, 589
DdeI CTNAG 2 cut(s) 321, 333
DpnI GATC 3 cut(s) 123, 132, 239
DpnII GATC 3 cut(s) 121, 130, 237
Eam1104I CTCTTC 2 cut(s) 155, 380
EarI CTCTTC 2 cut(s) 155, 380
Eco47I GGWCC 1 cut(s) 86
Eco57I CTGAAG 1 cut(s) 138
Eco91I GGTNACC 1 cut(s) 277
EcoO65I GGTNACC 1 cut(s) 277
EcoRII CCWGG 1 cut(s) 525
Esp3I CGTCTC 1 cut(s) 85
FaeI CATG 2 cut(s) 77, 101
FaiI YATR 9 cut(s) 41, 75, 99, 103, 199, 284, 408, 545, 587
FatI CATG 2 cut(s) 73, 97
FbaI TGATCA 1 cut(s) 237
Fnu4HI GCNGC 3 cut(s) 169, 438, 548
Fsp4HI GCNGC 3 cut(s) 169, 438, 548
GlaI GCGC 1 cut(s) 517
GluI GCNGC 3 cut(s) 169, 438, 548
HapII CCGG 2 cut(s) 56, 262
HgaI GACGC 1 cut(s) 663
HhaI GCGC 1 cut(s) 518
Hin1I GRCGYC 1 cut(s) 655
Hin1II CATG 2 cut(s) 77, 101
Hin6I GCGC 1 cut(s) 516
HinP1I GCGC 1 cut(s) 516
HincII GTYRAC 1 cut(s) 418
HindII GTYRAC 1 cut(s) 418
HindIII AAGCTT 1 cut(s) 485
HpaII CCGG 2 cut(s) 56, 262
HphI GGTGA 3 cut(s) 289, 415, 635
Hpy166II GTNNAC 2 cut(s) 418, 668
Hpy188I TCNGA 4 cut(s) 135, 208, 322, 334
Hpy188III TCNNGA 2 cut(s) 241, 262
Hpy8I GTNNAC 2 cut(s) 418, 668
HpyAV CCTTC 2 cut(s) 99, 681
HpyCH4III ACNGT 3 cut(s) 27, 232, 563
HpyCH4IV ACGT 1 cut(s) 432
HpyCH4V TGCA 3 cut(s) 225, 300, 668
HpyF10VI GCNNNNNNNGC 1 cut(s) 654
HpyF3I CTNAG 2 cut(s) 321, 333
HpySE526I ACGT 1 cut(s) 432
Hsp92I GRCGYC 1 cut(s) 655
Hsp92II CATG 2 cut(s) 77, 101
HspAI GCGC 1 cut(s) 516
Kpn2I TCCGGA 1 cut(s) 261
Ksp22I TGATCA 1 cut(s) 237
Kzo9I GATC 3 cut(s) 121, 130, 237
LmnI GCTCC 1 cut(s) 165
Lsp1109I GCAGC 2 cut(s) 180, 424
LweI GCATC 1 cut(s) 79
MaeII ACGT 1 cut(s) 432
MaeIII GTNAC 3 cut(s) 277, 428, 508
MalI GATC 3 cut(s) 123, 132, 239
MboI GATC 3 cut(s) 121, 130, 237
MboII GAAGA 5 cut(s) 131, 169, 172, 394, 397
MhlI GDGCHC 1 cut(s) 670
MluCI AATT 4 cut(s) 146, 257, 271, 498
MmeI TCCRAC 1 cut(s) 631
MnlI CCTC 8 cut(s) 129, 156, 258, 298, 381, 438, 650, 669
MroI TCCGGA 1 cut(s) 261
MseI TTAA 1 cut(s) 489
MslI CAYNNNNRTG 3 cut(s) 230, 233, 584
MspI CCGG 2 cut(s) 56, 262
MspR9I CCNGG 1 cut(s) 527
MvaI CCWGG 1 cut(s) 527
MwoI GCNNNNNNNGC 1 cut(s) 654
NdeII GATC 3 cut(s) 121, 130, 237
NlaIII CATG 2 cut(s) 77, 101
NlaIV GGNNCC 2 cut(s) 575, 609
NmuCI GTSAC 1 cut(s) 277
OliI CACNNNNGTG 1 cut(s) 230
PkrI GCNGC 3 cut(s) 170, 439, 549
Psp6I CCWGG 1 cut(s) 525
PspEI GGTNACC 1 cut(s) 277
PspGI CCWGG 1 cut(s) 525
PspN4I GGNNCC 2 cut(s) 575, 609
PspPI GGNCC 1 cut(s) 86
RsaI GTAC 3 cut(s) 37, 326, 590
RsaNI GTAC 3 cut(s) 36, 325, 589
RseI CAYNNNNRTG 3 cut(s) 230, 233, 584
SaqAI TTAA 1 cut(s) 489
SatI GCNGC 3 cut(s) 169, 438, 548
Sau3AI GATC 3 cut(s) 121, 130, 237
Sau96I GGNCC 1 cut(s) 86
ScrFI CCNGG 1 cut(s) 527
SduI GDGCHC 1 cut(s) 670
SetI ASST 8 cut(s) 435, 449, 489, 515, 541, 630, 642, 673
SfaNI GCATC 1 cut(s) 79
SinI GGWCC 1 cut(s) 86
SmiMI CAYNNNNRTG 3 cut(s) 230, 233, 584
Sse9I AATT 4 cut(s) 146, 257, 271, 498
SsiI CCGC 1 cut(s) 547
SspI AATATT 2 cut(s) 52, 247
StyD4I CCNGG 1 cut(s) 525
TaaI ACNGT 3 cut(s) 27, 232, 563
TaiI ACGT 1 cut(s) 435
TaqI TCGA 2 cut(s) 339, 674
TasI AATT 4 cut(s) 146, 257, 271, 498
TatI WGTACW 2 cut(s) 324, 588
TauI GCSGC 1 cut(s) 550
Tru1I TTAA 1 cut(s) 489
Tru9I TTAA 1 cut(s) 489
TscAI CASTG 3 cut(s) 237, 302, 568
TseFI GTSAC 1 cut(s) 277
TseI GCWGC 2 cut(s) 168, 437
Tsp45I GTSAC 1 cut(s) 277
TspDTI ATGAA 3 cut(s) 56, 86, 192
TspGWI ACGGA 1 cut(s) 82
TspRI CASTG 3 cut(s) 237, 302, 568
VneI GTGCAC 1 cut(s) 666
VpaK11BI GGWCC 1 cut(s) 86
XapI RAATTY 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.