FvH4_2g26190

RNA recognition motif 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001927
Physical Location & Seq
Reverse (-)
21069919 .. 21072523
2605 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g26190.t1

Sequence Viewer

Length: 876 bp
ATGTCCCCAAAACCTCTCAACCCAAATGCCAGACCCTTCTTCCACTTTCCTTCCAAAACCTACTCCAAGCCACTCAACCCTAATGCTAACCCATTTCAGACTCAGACTTACTTCTGCGTTGGCCCTTCTTGGCAGTGCAGACCATTTATCCCAAGAGTTCATAACAAAGTAACCATGGAGCTTCCAAGAGTGAGAAGGTTTGTCCGTTCAATGAAACATAATATTCCGGTCGGCTGGCGTAAGCATCATGTCGTTTCCCGTCGTGCCGTTCATGTAAGGAAACCTAAGTCTGAAGAGCACAAGGATCAGAGGATTCACAAGTCGTTGGAGAATAAGAAGATGAGCAGCAAAGGGGATGTCATTCCTTTTCCTTCATGTCCATCTAACCAGAAACCGTCCTGCACCACAGTGATGATCAAGAATATTCCCAACCAGTTCCGGAGAACTGCCTTGGTGAACATACTGAGAAGCCACTGCAGGAATGAAAACAAAAAGTCTGAGTACAAATCTGCGTTCGATTTTGTGTATTTGCCAATGGATTTCCAGAAATACTGGGAGAAGAAGAAGGTTACAAATCTGGGTTATGCATTTGTCAACTTCACCAGTCATGTTGCTGCTGTGAGGTTCCATCGTTACTATCACAACCGAGCGTGGAATGTGAAGCTGAACAATAAAGTTTGTGAAATCACTTGTGCTAAGATCCAGGGAAAACAAGCTCTTATGAGGCAATTTGAGAACAGTGTATTCTGGTGCCACACTGATATGTATTTGCCAGCGGTTTTGGAACCGGCCTGTGATGGTGAGTCACTGCCGGAGCTCATCAACATTGGATGCCGTGTATGTGCACCTTCTAGGAGACCCAGAGTGAAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_2

Protein Analysis

292

Amino Acids

34.14

Weight (kDa)

10.18

Isoelectric Point (pI)

64.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_2 PF04059 135 - 244 1.2e-19 RNA recognition motif 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 750
AccIII TCCGGA 1 cut(s) 438
AciI CCGC 1 cut(s) 776
AclWI GGATC 2 cut(s) 312, 694
AcuI CTGAAG 1 cut(s) 312
AfaI GTAC 1 cut(s) 503
AgsI TTSAA 1 cut(s) 210
AjnI CCWGG 1 cut(s) 702
AleI CACNNNNGTG 1 cut(s) 407
AluBI AGCT 4 cut(s) 181, 664, 716, 817
AluI AGCT 4 cut(s) 181, 664, 716, 817
Alw21I GWGCWC 3 cut(s) 300, 819, 847
Alw26I GTCTC 1 cut(s) 850
Alw44I GTGCAC 1 cut(s) 843
AlwI GGATC 2 cut(s) 312, 694
Aor13HI TCCGGA 1 cut(s) 438
AoxI GGCC 2 cut(s) 121, 789
ApaLI GTGCAC 1 cut(s) 843
ApeKI GCWGC 2 cut(s) 345, 614
ArsI GACNNNNNNTTYG 2 cut(s) 342, 374
AspS9I GGNCC 1 cut(s) 122
AsuHPI GGTGA 3 cut(s) 466, 592, 812
BaeGI GKGCMC 1 cut(s) 847
BanI GGYRCC 1 cut(s) 750
BanII GRGCYC 1 cut(s) 819
Bbv12I GWGCWC 3 cut(s) 300, 819, 847
BbvI GCAGC 2 cut(s) 357, 601
BccI CCATC 3 cut(s) 388, 636, 791
BceAI ACGGC 2 cut(s) 251, 819
BciT130I CCWGG 1 cut(s) 704
BclI TGATCA 1 cut(s) 414
BcoDI GTCTC 1 cut(s) 850
BfaI CTAG 1 cut(s) 852
BfmI CTRYAG 1 cut(s) 475
BisI GCNGC 2 cut(s) 346, 615
BlsI GCNGC 2 cut(s) 347, 616
Bme1390I CCNGG 1 cut(s) 704
BmgT120I GGNCC 1 cut(s) 122
BmiI GGNNCC 3 cut(s) 626, 752, 786
BmrFI CCNGG 1 cut(s) 704
BmrI ACTGGG 1 cut(s) 562
BmsI GCATC 2 cut(s) 253, 821
BmuI ACTGGG 1 cut(s) 562
BsaI GGTCTC 1 cut(s) 850
BsaJI CCNNGG 3 cut(s) 174, 450, 703
BsaWI WCCGGW 2 cut(s) 226, 438
Bse118I RCCGGY 1 cut(s) 787
Bse1I ACTGG 3 cut(s) 433, 557, 603
BseAI TCCGGA 1 cut(s) 438
BseBI CCWGG 1 cut(s) 704
BseDI CCNNGG 3 cut(s) 174, 450, 703
BseGI GGATG 2 cut(s) 361, 836
BseMII CTCAG 3 cut(s) 116, 455, 489
BseNI ACTGG 3 cut(s) 433, 557, 603
BseSI GKGCMC 1 cut(s) 847
BseXI GCAGC 2 cut(s) 357, 601
BsgI GTGCAG 2 cut(s) 157, 385
Bsh1285I CGRYCG 1 cut(s) 231
BshFI GGCC 2 cut(s) 123, 791
BshNI GGYRCC 1 cut(s) 750
BsiEI CGRYCG 1 cut(s) 231
BsiHKAI GWGCWC 3 cut(s) 300, 819, 847
BsiSI CCGG 4 cut(s) 227, 439, 788, 812
BsmAI GTCTC 1 cut(s) 850
BsnI GGCC 2 cut(s) 123, 791
Bso31I GGTCTC 1 cut(s) 850
Bsp1286I GDGCHC 3 cut(s) 300, 819, 847
Bsp13I TCCGGA 1 cut(s) 438
Bsp143I GATC 3 cut(s) 304, 414, 699
Bsp19I CCATGG 1 cut(s) 174
BspACI CCGC 1 cut(s) 776
BspANI GGCC 2 cut(s) 123, 791
BspCNI CTCAG 3 cut(s) 115, 456, 490
BspEI TCCGGA 1 cut(s) 438
BspLI GGNNCC 3 cut(s) 626, 752, 786
BspMAI CTGCAG 1 cut(s) 479
BspPI GGATC 2 cut(s) 312, 694
BspQI GCTCTTC 1 cut(s) 288
BspT107I GGYRCC 1 cut(s) 750
BspTNI GGTCTC 1 cut(s) 850
BsrFI RCCGGY 1 cut(s) 787
BsrI ACTGG 3 cut(s) 433, 557, 603
BssAI RCCGGY 1 cut(s) 787
BssECI CCNNGG 3 cut(s) 174, 450, 703
BssMI GATC 3 cut(s) 304, 414, 699
BssT1I CCWWGG 2 cut(s) 174, 450
Bst2UI CCWGG 1 cut(s) 704
Bst4CI ACNGT 3 cut(s) 396, 409, 740
Bst6I CTCTTC 1 cut(s) 288
BstC8I GCNNGC 2 cut(s) 236, 774
BstDEI CTNAG 5 cut(s) 102, 285, 464, 498, 696
BstDSI CCRYGG 1 cut(s) 174
BstF5I GGATG 2 cut(s) 361, 836
BstKTI GATC 3 cut(s) 307, 417, 702
BstMAI GTCTC 1 cut(s) 850
BstMBI GATC 3 cut(s) 304, 414, 699
BstMCI CGRYCG 1 cut(s) 231
BstNI CCWGG 1 cut(s) 704
BstSCI CCNGG 1 cut(s) 702
BstSFI CTRYAG 1 cut(s) 475
BstSLI GKGCMC 1 cut(s) 847
BstV1I GCAGC 2 cut(s) 357, 601
BstX2I RGATCY 1 cut(s) 699
BstYI RGATCY 1 cut(s) 699
BsuRI GGCC 2 cut(s) 123, 791
BtgI CCRYGG 1 cut(s) 174
BtsCI GGATG 2 cut(s) 361, 836
BtsI GCAGTG 3 cut(s) 140, 472, 806
BtsIMutI CAGTG 6 cut(s) 140, 414, 472, 745, 756, 806
Cac8I GCNNGC 2 cut(s) 236, 774
Cfr10I RCCGGY 1 cut(s) 787
Cfr13I GGNCC 1 cut(s) 122
Csp6I GTAC 1 cut(s) 502
CviAII CATG 5 cut(s) 175, 248, 272, 375, 608
CviJI RGCY 9 cut(s) 70, 123, 181, 234, 471, 664, 716, 791, 817
CviKI_1 RGCY 9 cut(s) 70, 123, 181, 234, 471, 664, 716, 791, 817
CviQI GTAC 1 cut(s) 502
DdeI CTNAG 5 cut(s) 102, 285, 464, 498, 696
DpnI GATC 3 cut(s) 306, 416, 701
DpnII GATC 3 cut(s) 304, 414, 699
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
Ecl136II GAGCTC 1 cut(s) 817
Eco130I CCWWGG 2 cut(s) 174, 450
Eco24I GRGCYC 1 cut(s) 819
Eco31I GGTCTC 1 cut(s) 850
Eco53kI GAGCTC 1 cut(s) 817
Eco57I CTGAAG 1 cut(s) 312
EcoICRI GAGCTC 1 cut(s) 817
EcoRII CCWGG 1 cut(s) 702
EcoT14I CCWWGG 2 cut(s) 174, 450
EcoT22I ATGCAT 1 cut(s) 589
EcoT38I GRGCYC 1 cut(s) 819
ErhI CCWWGG 2 cut(s) 174, 450
FaeI CATG 5 cut(s) 178, 251, 275, 378, 611
FatI CATG 5 cut(s) 174, 247, 271, 374, 607
FbaI TGATCA 1 cut(s) 414
Fnu4HI GCNGC 2 cut(s) 346, 615
FokI GGATG 2 cut(s) 368, 843
FriOI GRGCYC 1 cut(s) 819
Fsp4HI GCNGC 2 cut(s) 346, 615
FspBI CTAG 1 cut(s) 852
GluI GCNGC 2 cut(s) 346, 615
HaeIII GGCC 2 cut(s) 123, 791
HapII CCGG 4 cut(s) 227, 439, 788, 812
Hin1II CATG 5 cut(s) 178, 251, 275, 378, 611
HincII GTYRAC 1 cut(s) 595
HindII GTYRAC 1 cut(s) 595
HinfI GANTC 3 cut(s) 100, 313, 803
HpaII CCGG 4 cut(s) 227, 439, 788, 812
HphI GGTGA 3 cut(s) 466, 592, 812
Hpy166II GTNNAC 3 cut(s) 457, 595, 845
Hpy188I TCNGA 5 cut(s) 99, 105, 292, 309, 499
Hpy188III TCNNGA 3 cut(s) 418, 439, 544
Hpy8I GTNNAC 3 cut(s) 457, 595, 845
Hpy99I CGWCG 1 cut(s) 264
HpyAV CCTTC 7 cut(s) 46, 60, 135, 189, 381, 559, 858
HpyCH4III ACNGT 3 cut(s) 396, 409, 740
HpyCH4V TGCA 5 cut(s) 138, 402, 477, 587, 845
HpyF3I CTNAG 5 cut(s) 102, 285, 464, 498, 696
Hsp92II CATG 5 cut(s) 178, 251, 275, 378, 611
Kpn2I TCCGGA 1 cut(s) 438
Ksp22I TGATCA 1 cut(s) 414
Kzo9I GATC 3 cut(s) 304, 414, 699
LguI GCTCTTC 1 cut(s) 288
LmnI GCTCC 2 cut(s) 178, 814
Lsp1109I GCAGC 2 cut(s) 357, 601
LweI GCATC 2 cut(s) 253, 821
MaeI CTAG 1 cut(s) 852
MaeIII GTNAC 4 cut(s) 169, 568, 632, 804
MalI GATC 3 cut(s) 306, 416, 701
MboI GATC 3 cut(s) 304, 414, 699
MboII GAAGA 5 cut(s) 31, 305, 349, 571, 574
MflI RGATCY 1 cut(s) 699
MhlI GDGCHC 3 cut(s) 300, 819, 847
MluCI AATT 1 cut(s) 728
MlyI GAGTC 2 cut(s) 94, 812
MmeI TCCRAC 1 cut(s) 306
MnlI CCTC 4 cut(s) 24, 303, 615, 717
Mph1103I ATGCAT 1 cut(s) 589
MroI TCCGGA 1 cut(s) 438
MslI CAYNNNNRTG 3 cut(s) 407, 410, 761
MspA1I CMGCKG 1 cut(s) 776
MspI CCGG 4 cut(s) 227, 439, 788, 812
MspR9I CCNGG 1 cut(s) 704
MvaI CCWGG 1 cut(s) 704
NcoI CCATGG 1 cut(s) 174
NdeII GATC 3 cut(s) 304, 414, 699
NlaIII CATG 5 cut(s) 178, 251, 275, 378, 611
NlaIV GGNNCC 3 cut(s) 626, 752, 786
NmuCI GTSAC 1 cut(s) 804
NsiI ATGCAT 1 cut(s) 589
OliI CACNNNNGTG 1 cut(s) 407
PciSI GCTCTTC 1 cut(s) 288
PfeI GAWTC 1 cut(s) 313
PkrI GCNGC 2 cut(s) 347, 616
PleI GAGTC 2 cut(s) 94, 811
PpsI GAGTC 2 cut(s) 94, 811
Psp124BI GAGCTC 1 cut(s) 819
Psp6I CCWGG 1 cut(s) 702
PspGI CCWGG 1 cut(s) 702
PspN4I GGNNCC 3 cut(s) 626, 752, 786
PspPI GGNCC 1 cut(s) 122
PstI CTGCAG 1 cut(s) 479
PsuI RGATCY 1 cut(s) 699
RsaI GTAC 1 cut(s) 503
RsaNI GTAC 1 cut(s) 502
RseI CAYNNNNRTG 3 cut(s) 407, 410, 761
SacI GAGCTC 1 cut(s) 819
SapI GCTCTTC 1 cut(s) 288
SatI GCNGC 2 cut(s) 346, 615
Sau3AI GATC 3 cut(s) 304, 414, 699
Sau96I GGNCC 1 cut(s) 122
SchI GAGTC 2 cut(s) 94, 812
ScrFI CCNGG 1 cut(s) 704
SduI GDGCHC 3 cut(s) 300, 819, 847
SfaNI GCATC 2 cut(s) 253, 821
SfcI CTRYAG 1 cut(s) 475
SmiMI CAYNNNNRTG 3 cut(s) 407, 410, 761
Sse9I AATT 1 cut(s) 728
SsiI CCGC 1 cut(s) 776
SspI AATATT 2 cut(s) 223, 424
SspMI CTAG 1 cut(s) 852
SstI GAGCTC 1 cut(s) 819
StyD4I CCNGG 1 cut(s) 702
StyI CCWWGG 2 cut(s) 174, 450
TaaI ACNGT 3 cut(s) 396, 409, 740
TaqI TCGA 1 cut(s) 516
TasI AATT 1 cut(s) 728
TatI WGTACW 1 cut(s) 501
TfiI GAWTC 1 cut(s) 313
TscAI CASTG 6 cut(s) 140, 414, 479, 745, 763, 813
TseFI GTSAC 1 cut(s) 804
TseI GCWGC 2 cut(s) 345, 614
Tsp45I GTSAC 1 cut(s) 804
TspDTI ATGAA 5 cut(s) 149, 227, 260, 363, 498
TspGWI ACGGA 1 cut(s) 194
TspRI CASTG 6 cut(s) 140, 414, 479, 745, 763, 813
VneI GTGCAC 1 cut(s) 843
XspI CTAG 1 cut(s) 852
Zsp2I ATGCAT 1 cut(s) 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.