RLG00000011842

RNA recognition motif 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001927
Physical Location & Seq
Forward (+)
13219291 .. 13220633
1343 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011842

Sequence Viewer

Length: 786 bp
ATGGGCTCCAAACCTCTCAACTCCAACGCCCAGCCATTTTTTGCAAGCCGTTTCCACAACTTCCAGACCTATGTGTGCTACAACTACCCAATCTATGCTGATCATCATCTGCATCCAAATCTTTTTCATCATCAATTAAACCCAACCGCAGTGGTGGAGTTTCCTAGAGTTCCGATGAGACGACTTCGAAAAAGGAACGGTCGAAAAAGGAACATTGGTGCTTTCAGTCGTGGTGCTACTGGGGAGGGAGGTGTAATTCCATTTCCTTCAGGTCCGGGTCAGCAGCAAAATGGGTCGTCAGCTACTACAACTATCATGATAAAGAATATCCCAAACCAGTTCAGGAGGAGTGATCTACTGGGTATATTGACGGAGCATTGCTTGGTAGAAAACCTAGATGCTGTGGTGCGGTCTGATCCTAACAAGTCCGAGTTTGATTTTGTGTATTTGCCCATGGATTTCAACAAAAATAGGGGTAGCAATTTGGGTTACGCATTTGTAAACTTCACCTGTGCAATTGGGGCACAAAGATTCTACCAGCGTTACCACAATTTCGAGTGGGATGTTGAACAGAACAAAAAAACATGTGCAATTACCTGCGCTAAAATTCAGGGAAAGAAAGCACTAATCGGGAATTTTAGGCGCAAAGTATTCCAGTGCGAGTGTGACGAGTACTTGCCTGTGGTTGTCGCACCTCCATGCGATGGTGTATCGCCTCCGAAGCTCACACCTCTTGGAAAGCTTAGGGGCGCACCCACGTACCCCACCAGTAGATTAAGAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_2

Protein Analysis

262

Amino Acids

29.56

Weight (kDa)

9.71

Isoelectric Point (pI)

47.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_2 PF04059 103 - 214 3.3e-17 RNA recognition motif 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 605
AccB7I CCANNNNNTGG 1 cut(s) 704
AciI CCGC 2 cut(s) 147, 409
AclWI GGATC 1 cut(s) 410
AcsI RAATTY 2 cut(s) 606, 634
AcuI CTGAAG 1 cut(s) 252
AfaI GTAC 2 cut(s) 674, 761
AfiI CCNNNNNNNGG 1 cut(s) 704
AflIII ACRYGT 1 cut(s) 584
AgsI TTSAA 2 cut(s) 463, 569
AluBI AGCT 3 cut(s) 302, 724, 742
AluI AGCT 3 cut(s) 302, 724, 742
Alw26I GTCTC 1 cut(s) 172
AlwI GGATC 1 cut(s) 410
ApeKI GCWGC 1 cut(s) 283
ApoI RAATTY 2 cut(s) 606, 634
AspLEI GCGC 3 cut(s) 602, 645, 752
AspS9I GGNCC 1 cut(s) 272
AsuC2I CCSGG 1 cut(s) 276
AsuHPI GGTGA 1 cut(s) 499
AsuII TTCGAA 1 cut(s) 187
AvaII GGWCC 1 cut(s) 272
BaeGI GKGCMC 1 cut(s) 526
BaeI ACNNNNGTAYC 2 cut(s) 743, 776
BanII GRGCYC 1 cut(s) 8
BbvI GCAGC 1 cut(s) 295
BccI CCATC 1 cut(s) 698
BceAI ACGGC 1 cut(s) 33
BclI TGATCA 1 cut(s) 100
BcnI CCSGG 1 cut(s) 276
BcoDI GTCTC 1 cut(s) 172
BfaI CTAG 2 cut(s) 165, 395
BfuAI ACCTGC 1 cut(s) 605
BisI GCNGC 1 cut(s) 284
BlsI GCNGC 1 cut(s) 285
BmcAI AGTACT 1 cut(s) 674
Bme1390I CCNGG 1 cut(s) 276
Bme18I GGWCC 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 272
BmiI GGNNCC 1 cut(s) 7
BmrFI CCNGG 1 cut(s) 276
BmrI ACTGGG 2 cut(s) 249, 368
BmsI GCATC 2 cut(s) 121, 388
BmuI ACTGGG 2 cut(s) 249, 368
Bpu10I CCTNAGC 1 cut(s) 743
Bpu14I TTCGAA 1 cut(s) 187
BpuMI CCSGG 1 cut(s) 276
BsaAI YACGTR 1 cut(s) 759
BsaBI GATNNNNATC 1 cut(s) 105
BsaJI CCNNGG 1 cut(s) 453
Bsc4I CCNNNNNNNGG 1 cut(s) 704
Bse1I ACTGG 5 cut(s) 244, 337, 363, 655, 768
Bse3DI GCAATG 1 cut(s) 376
Bse8I GATNNNNATC 1 cut(s) 105
BseDI CCNNGG 1 cut(s) 453
BseGI GGATG 2 cut(s) 112, 568
BseJI GATNNNNATC 1 cut(s) 105
BseLI CCNNNNNNNGG 1 cut(s) 704
BseMI GCAATG 1 cut(s) 376
BseNI ACTGG 5 cut(s) 244, 337, 363, 655, 768
BseRI GAGGAG 1 cut(s) 361
BseSI GKGCMC 1 cut(s) 526
BseXI GCAGC 1 cut(s) 295
BseYI CCCAGC 1 cut(s) 30
Bsh1285I CGRYCG 1 cut(s) 202
BsiEI CGRYCG 1 cut(s) 202
BsiSI CCGG 1 cut(s) 275
BslI CCNNNNNNNGG 1 cut(s) 704
BsmAI GTCTC 1 cut(s) 172
BsmBI CGTCTC 1 cut(s) 172
Bsp119I TTCGAA 1 cut(s) 187
Bsp1286I GDGCHC 2 cut(s) 8, 526
Bsp143I GATC 3 cut(s) 100, 352, 415
Bsp19I CCATGG 1 cut(s) 453
BspACI CCGC 2 cut(s) 147, 409
BspHI TCATGA 1 cut(s) 315
BspLI GGNNCC 1 cut(s) 7
BspMI ACCTGC 1 cut(s) 605
BspPI GGATC 1 cut(s) 410
BspT104I TTCGAA 1 cut(s) 187
BsrDI GCAATG 1 cut(s) 376
BsrI ACTGG 5 cut(s) 244, 337, 363, 655, 768
BssECI CCNNGG 1 cut(s) 453
BssMI GATC 3 cut(s) 100, 352, 415
BssT1I CCWWGG 1 cut(s) 453
Bst4CI ACNGT 1 cut(s) 200
BstBAI YACGTR 1 cut(s) 759
BstBI TTCGAA 1 cut(s) 187
BstC8I GCNNGC 1 cut(s) 46
BstDEI CTNAG 1 cut(s) 743
BstDSI CCRYGG 1 cut(s) 453
BstF5I GGATG 2 cut(s) 112, 568
BstHHI GCGC 3 cut(s) 602, 645, 752
BstKTI GATC 3 cut(s) 103, 355, 418
BstMAI GTCTC 1 cut(s) 172
BstMBI GATC 3 cut(s) 100, 352, 415
BstMCI CGRYCG 1 cut(s) 202
BstMWI GCNNNNNNNGC 2 cut(s) 521, 721
BstNSI RCATGY 1 cut(s) 588
BstSCI CCNGG 1 cut(s) 274
BstSLI GKGCMC 1 cut(s) 526
BstV1I GCAGC 1 cut(s) 295
BtgI CCRYGG 1 cut(s) 453
BtgZI GCGATG 1 cut(s) 717
BtsCI GGATG 2 cut(s) 112, 568
BtsI GCAGTG 1 cut(s) 156
BtsIMutI CAGTG 2 cut(s) 156, 662
BveI ACCTGC 1 cut(s) 605
Cac8I GCNNGC 1 cut(s) 46
CciI TCATGA 1 cut(s) 315
CfoI GCGC 3 cut(s) 602, 645, 752
Cfr13I GGNCC 1 cut(s) 272
Csp6I GTAC 2 cut(s) 673, 760
CspCI CAANNNNNGTGG 2 cut(s) 132, 167
CviAII CATG 4 cut(s) 316, 454, 585, 699
CviJI RGCY 6 cut(s) 6, 34, 48, 302, 724, 742
CviKI_1 RGCY 6 cut(s) 6, 34, 48, 302, 724, 742
CviQI GTAC 2 cut(s) 673, 760
DdeI CTNAG 1 cut(s) 743
DpnI GATC 3 cut(s) 102, 354, 417
DpnII GATC 3 cut(s) 100, 352, 415
Eco130I CCWWGG 1 cut(s) 453
Eco24I GRGCYC 1 cut(s) 8
Eco47I GGWCC 1 cut(s) 272
Eco57I CTGAAG 1 cut(s) 252
EcoT14I CCWWGG 1 cut(s) 453
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 453
Esp3I CGTCTC 1 cut(s) 172
FaeI CATG 4 cut(s) 319, 457, 588, 702
FaiI YATR 7 cut(s) 72, 96, 317, 365, 455, 586, 700
FatI CATG 4 cut(s) 315, 453, 584, 698
FbaI TGATCA 1 cut(s) 100
Fnu4HI GCNGC 1 cut(s) 284
FokI GGATG 2 cut(s) 99, 575
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 1 cut(s) 284
FspBI CTAG 2 cut(s) 165, 395
GlaI GCGC 3 cut(s) 601, 644, 751
GluI GCNGC 1 cut(s) 284
GsaI CCCAGC 1 cut(s) 34
HapII CCGG 1 cut(s) 275
HhaI GCGC 3 cut(s) 602, 645, 752
Hin1II CATG 4 cut(s) 319, 457, 588, 702
Hin6I GCGC 3 cut(s) 600, 643, 750
HinP1I GCGC 3 cut(s) 600, 643, 750
HindIII AAGCTT 1 cut(s) 740
HinfI GANTC 2 cut(s) 531, 780
HpaII CCGG 1 cut(s) 275
HphI GGTGA 1 cut(s) 499
Hpy166II GTNNAC 1 cut(s) 502
Hpy188I TCNGA 4 cut(s) 174, 415, 430, 720
Hpy188III TCNNGA 4 cut(s) 64, 316, 343, 631
Hpy8I GTNNAC 1 cut(s) 502
HpyAV CCTTC 1 cut(s) 276
HpyCH4III ACNGT 1 cut(s) 200
HpyCH4IV ACGT 1 cut(s) 758
HpyCH4V TGCA 4 cut(s) 44, 112, 515, 590
HpyF10VI GCNNNNNNNGC 2 cut(s) 521, 721
HpyF3I CTNAG 1 cut(s) 743
HpySE526I ACGT 1 cut(s) 758
Hsp92II CATG 4 cut(s) 319, 457, 588, 702
HspAI GCGC 3 cut(s) 600, 643, 750
Ksp22I TGATCA 1 cut(s) 100
Kzo9I GATC 3 cut(s) 100, 352, 415
LmnI GCTCC 2 cut(s) 11, 373
Lsp1109I GCAGC 1 cut(s) 295
LweI GCATC 2 cut(s) 121, 388
MaeI CTAG 2 cut(s) 165, 395
MaeII ACGT 1 cut(s) 758
MaeIII GTNAC 3 cut(s) 488, 542, 665
MalI GATC 3 cut(s) 102, 354, 417
MboI GATC 3 cut(s) 100, 352, 415
MfeI CAATTG 1 cut(s) 516
MhlI GDGCHC 2 cut(s) 8, 526
MluCI AATT 8 cut(s) 134, 255, 481, 516, 550, 591, 606, 634
MmeI TCCRAC 1 cut(s) 48
MnlI CCTC 7 cut(s) 24, 238, 242, 339, 705, 726, 741
MseI TTAA 2 cut(s) 137, 776
MslI CAYNNNNRTG 1 cut(s) 697
MspI CCGG 1 cut(s) 275
MspR9I CCNGG 1 cut(s) 276
MunI CAATTG 1 cut(s) 516
MwoI GCNNNNNNNGC 2 cut(s) 521, 721
NciI CCSGG 1 cut(s) 276
NcoI CCATGG 1 cut(s) 453
NdeII GATC 3 cut(s) 100, 352, 415
NlaIII CATG 4 cut(s) 319, 457, 588, 702
NlaIV GGNNCC 1 cut(s) 7
NmuCI GTSAC 1 cut(s) 665
NspI RCATGY 1 cut(s) 588
NspV TTCGAA 1 cut(s) 187
PagI TCATGA 1 cut(s) 315
PciI ACATGT 1 cut(s) 584
PfeI GAWTC 2 cut(s) 531, 780
PflMI CCANNNNNTGG 1 cut(s) 704
PkrI GCNGC 1 cut(s) 285
Ppu21I YACGTR 1 cut(s) 759
PscI ACATGT 1 cut(s) 584
PspFI CCCAGC 1 cut(s) 30
PspN4I GGNNCC 1 cut(s) 7
PspPI GGNCC 1 cut(s) 272
RsaI GTAC 2 cut(s) 674, 761
RsaNI GTAC 2 cut(s) 673, 760
RseI CAYNNNNRTG 1 cut(s) 697
SaqAI TTAA 2 cut(s) 137, 776
SatI GCNGC 1 cut(s) 284
Sau3AI GATC 3 cut(s) 100, 352, 415
Sau96I GGNCC 1 cut(s) 272
ScaI AGTACT 1 cut(s) 674
ScrFI CCNGG 1 cut(s) 276
SduI GDGCHC 2 cut(s) 8, 526
SfaNI GCATC 2 cut(s) 121, 388
SfuI TTCGAA 1 cut(s) 187
SinI GGWCC 1 cut(s) 272
SmiMI CAYNNNNRTG 1 cut(s) 697
Sse9I AATT 8 cut(s) 134, 255, 481, 516, 550, 591, 606, 634
SsiI CCGC 2 cut(s) 147, 409
SspMI CTAG 2 cut(s) 165, 395
StyD4I CCNGG 1 cut(s) 274
StyI CCWWGG 1 cut(s) 453
TaaI ACNGT 1 cut(s) 200
TaiI ACGT 1 cut(s) 761
TaqI TCGA 3 cut(s) 187, 202, 555
TasI AATT 8 cut(s) 134, 255, 481, 516, 550, 591, 606, 634
TatI WGTACW 1 cut(s) 672
TfiI GAWTC 2 cut(s) 531, 780
Tru1I TTAA 2 cut(s) 137, 776
Tru9I TTAA 2 cut(s) 137, 776
TscAI CASTG 2 cut(s) 156, 662
TseFI GTSAC 1 cut(s) 665
TseI GCWGC 1 cut(s) 283
Tsp45I GTSAC 1 cut(s) 665
TspDTI ATGAA 1 cut(s) 116
TspGWI ACGGA 1 cut(s) 386
TspRI CASTG 2 cut(s) 156, 662
Van91I CCANNNNNTGG 1 cut(s) 704
VpaK11BI GGWCC 1 cut(s) 272
XapI RAATTY 2 cut(s) 606, 634
XceI RCATGY 1 cut(s) 588
XspI CTAG 2 cut(s) 165, 395
ZrmI AGTACT 1 cut(s) 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.