Rh6CG374100

RNA recognition motif 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001927
Physical Location & Seq
Reverse (-)
56004551 .. 56011749
7199 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG374100.1

Sequence Viewer

Length: 1041 bp
ATGATTAGTTACCACCCAGGTTTCTTTCTGATTGTTACATGTGGATTTTCAGAATGCTCAGTAGTGGAGATTACAGATAAGCTGGAAGAAGAAGTGCACTCTTGCTCATCTACCAAGATTTCAAGTGCTCAAGATGACATAGAGATGGCTTCAGCAGTTACTGAAGCAACTAAGTTCACTACTTGTTCAAGTGCATCGCAAGATAATGAAGAAGATGAAGTTTTAGGAGGAGAAGCAGTGCTTTTAACCGAAAAGCATTCAGTTTCAGTTGAGGTTGGGGCTTCTTTGCTTCGCTTTGTCAGAGGAAAAGGGTACAGAGTTCAGCATCGGCCGCCAAACCCACCCATAAACCCTAGAGTACTTCCTCAGCCTCGAAGAAATACTCGCCTTAAGCCAAAGAGGAACATCGCTGCTACTACTTCTGGCGTTCGGAAATGGGTGCCAAAAAGGAGAGATGAGCAAGCTTCTACCTCTGTTAGGACTAGAAATGTTCGGGAGGGTTCTTCTGTAATTCCATTTCCAACAAGTCCTTATCAGCAAATAACTTCGACTACGACAACCATCATGATCAAGAACATCCCAAATCAGTTTGGGAGGAGTGATCTACTAAGTATGTTGAAAGATCATTGCTTGGATGAGAACTTAAACGCTGTGTTGCGGTCTGAACCCAAGGAAAAATCCGAGTTTGATTTTCTCTACTTGCCTATGGATTTCAAGAAGTTTTGGGAAAAAGAAAGGATCTCCAACCTGGGATATGCTTTCGTAAATTTTACCTCGTCTAGTGCCGCACTCAGATTCTATAAGCAATACCACAAATTTGAGTGGCCAGTGCCGAAAAACAAAAAGATATGTGAGGTTACTTGCGCCAAAACCCAGGGCAAGGAAGCTTTAACCAAGAAATTCAAGAACAAGATATTTTGGTGTCACAGCAATGAGTACTTGCCGGTGATTTTAGCACCTCCATGTGATGGTGTTAAGAACTCCGGTCTTGTAATGGTCGGAAAACTTGCCGGGCAACCAAAGATTCTGAAGAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_2

Protein Analysis

346

Amino Acids

39.06

Weight (kDa)

9.36

Isoelectric Point (pI)

47.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_2 PF04059 186 - 302 8.7e-17 RNA recognition motif 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 439
AccB7I CCANNNNNTGG 1 cut(s) 968
AciI CCGC 3 cut(s) 332, 658, 786
AclWI GGATC 1 cut(s) 746
AcoI YGGCCR 2 cut(s) 329, 824
AcsI RAATTY 3 cut(s) 766, 815, 899
AcuI CTGAAG 2 cut(s) 135, 183
AfaI GTAC 3 cut(s) 314, 360, 938
AfiI CCNNNNNNNGG 3 cut(s) 477, 880, 968
AflII CTTAAG 1 cut(s) 389
AflIII ACRYGT 1 cut(s) 38
AgsI TTSAA 5 cut(s) 123, 189, 619, 715, 904
AjnI CCWGG 3 cut(s) 16, 747, 873
AluBI AGCT 3 cut(s) 82, 464, 887
AluI AGCT 3 cut(s) 82, 464, 887
Alw21I GWGCWC 2 cut(s) 99, 130
Alw44I GTGCAC 1 cut(s) 95
AlwI GGATC 1 cut(s) 746
AlwNI CAGNNNCTG 1 cut(s) 161
AoxI GGCC 2 cut(s) 329, 824
ApaLI GTGCAC 1 cut(s) 95
ApeKI GCWGC 1 cut(s) 410
ApoI RAATTY 3 cut(s) 766, 815, 899
AspLEI GCGC 1 cut(s) 866
AsuC2I CCSGG 1 cut(s) 1012
AsuHPI GGTGA 1 cut(s) 958
BaeGI GKGCMC 1 cut(s) 99
BalI TGGCCA 1 cut(s) 826
BanI GGYRCC 1 cut(s) 439
Bbv12I GWGCWC 2 cut(s) 99, 130
BbvCI CCTCAGC 1 cut(s) 366
BbvI GCAGC 1 cut(s) 397
BccI CCATC 3 cut(s) 139, 569, 962
BciT130I CCWGG 3 cut(s) 18, 749, 875
BclI TGATCA 1 cut(s) 567
BcnI CCSGG 1 cut(s) 1012
BfaI CTAG 3 cut(s) 354, 483, 780
BfrI CTTAAG 1 cut(s) 389
BisI GCNGC 3 cut(s) 332, 411, 786
BlsI GCNGC 3 cut(s) 333, 412, 787
BmcAI AGTACT 2 cut(s) 360, 938
Bme1390I CCNGG 4 cut(s) 18, 749, 875, 1012
BmiI GGNNCC 1 cut(s) 441
BmrFI CCNGG 4 cut(s) 18, 749, 875, 1012
BmsI GCATC 2 cut(s) 203, 334
Bpu10I CCTNAGC 1 cut(s) 366
BpuEI CTTGAG 1 cut(s) 114
BpuMI CCSGG 1 cut(s) 1012
BsaJI CCNNGG 5 cut(s) 16, 669, 748, 873, 874
BsaWI WCCGGW 1 cut(s) 983
BsaXI ACNNNNNCTCC 2 cut(s) 222, 252
Bsc4I CCNNNNNNNGG 3 cut(s) 477, 880, 968
Bse118I RCCGGY 1 cut(s) 943
Bse1I ACTGG 1 cut(s) 827
Bse3DI GCAATG 2 cut(s) 625, 937
BseBI CCWGG 3 cut(s) 18, 749, 875
BseDI CCNNGG 5 cut(s) 16, 669, 748, 873, 874
BseGI GGATG 2 cut(s) 576, 640
BseLI CCNNNNNNNGG 3 cut(s) 477, 880, 968
BseMI GCAATG 2 cut(s) 625, 937
BseMII CTCAG 3 cut(s) 72, 380, 805
BseNI ACTGG 1 cut(s) 827
BseRI GAGGAG 2 cut(s) 243, 610
BseSI GKGCMC 1 cut(s) 99
BseX3I CGGCCG 1 cut(s) 329
BseXI GCAGC 1 cut(s) 397
Bsh1285I CGRYCG 1 cut(s) 332
BshFI GGCC 2 cut(s) 331, 826
BshNI GGYRCC 1 cut(s) 439
BsiEI CGRYCG 1 cut(s) 332
BsiHKAI GWGCWC 2 cut(s) 99, 130
BsiSI CCGG 3 cut(s) 944, 984, 1011
BslI CCNNNNNNNGG 3 cut(s) 477, 880, 968
BsmI GAATGC 2 cut(s) 59, 256
BsnI GGCC 2 cut(s) 331, 826
Bsp1286I GDGCHC 2 cut(s) 99, 130
Bsp143I GATC 4 cut(s) 567, 601, 622, 738
BspACI CCGC 3 cut(s) 332, 658, 786
BspANI GGCC 2 cut(s) 331, 826
BspCNI CTCAG 3 cut(s) 71, 379, 804
BspHI TCATGA 1 cut(s) 564
BspLI GGNNCC 1 cut(s) 441
BspPI GGATC 1 cut(s) 746
BspT107I GGYRCC 1 cut(s) 439
BspTI CTTAAG 1 cut(s) 389
BsrDI GCAATG 2 cut(s) 625, 937
BsrFI RCCGGY 1 cut(s) 943
BsrI ACTGG 1 cut(s) 827
BssAI RCCGGY 1 cut(s) 943
BssECI CCNNGG 5 cut(s) 16, 669, 748, 873, 874
BssMI GATC 4 cut(s) 567, 601, 622, 738
BssT1I CCWWGG 1 cut(s) 669
Bst2UI CCWGG 3 cut(s) 18, 749, 875
BstAFI CTTAAG 1 cut(s) 389
BstC8I GCNNGC 1 cut(s) 462
BstDEI CTNAG 5 cut(s) 58, 171, 366, 608, 791
BstENI CCTNNNNNAGG 1 cut(s) 475
BstF5I GGATG 2 cut(s) 576, 640
BstHHI GCGC 1 cut(s) 866
BstKTI GATC 4 cut(s) 570, 604, 625, 741
BstMBI GATC 4 cut(s) 567, 601, 622, 738
BstMCI CGRYCG 1 cut(s) 332
BstMWI GCNNNNNNNGC 1 cut(s) 331
BstNI CCWGG 3 cut(s) 18, 749, 875
BstNSI RCATGY 1 cut(s) 42
BstSCI CCNGG 4 cut(s) 16, 747, 873, 1010
BstSLI GKGCMC 1 cut(s) 99
BstV1I GCAGC 1 cut(s) 397
BstX2I RGATCY 1 cut(s) 738
BstYI RGATCY 1 cut(s) 738
BstZI CGGCCG 1 cut(s) 329
BsuRI GGCC 2 cut(s) 331, 826
BtgZI GCGATG 2 cut(s) 180, 391
BtsCI GGATG 2 cut(s) 576, 640
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 2 cut(s) 243, 834
Cac8I GCNNGC 1 cut(s) 462
CaiI CAGNNNCTG 1 cut(s) 161
CciI TCATGA 1 cut(s) 564
CfoI GCGC 1 cut(s) 866
Cfr10I RCCGGY 1 cut(s) 943
Csp6I GTAC 3 cut(s) 313, 359, 937
CviAII CATG 3 cut(s) 39, 565, 963
CviJI RGCY 9 cut(s) 82, 149, 281, 331, 370, 394, 464, 826, 887
CviKI_1 RGCY 9 cut(s) 82, 149, 281, 331, 370, 394, 464, 826, 887
CviQI GTAC 3 cut(s) 313, 359, 937
DdeI CTNAG 5 cut(s) 58, 171, 366, 608, 791
DpnI GATC 4 cut(s) 569, 603, 624, 740
DpnII GATC 4 cut(s) 567, 601, 622, 738
EaeI YGGCCR 2 cut(s) 329, 824
EagI CGGCCG 1 cut(s) 329
EclXI CGGCCG 1 cut(s) 329
Eco130I CCWWGG 1 cut(s) 669
Eco52I CGGCCG 1 cut(s) 329
Eco57I CTGAAG 2 cut(s) 135, 183
EcoNI CCTNNNNNAGG 1 cut(s) 475
EcoRII CCWGG 3 cut(s) 16, 747, 873
EcoT14I CCWWGG 1 cut(s) 669
ErhI CCWWGG 1 cut(s) 669
FaeI CATG 3 cut(s) 42, 568, 966
FalI AAGNNNNNCTT 2 cut(s) 225, 257
FatI CATG 3 cut(s) 38, 564, 962
FbaI TGATCA 1 cut(s) 567
Fnu4HI GCNGC 3 cut(s) 332, 411, 786
FokI GGATG 2 cut(s) 563, 647
Fsp4HI GCNGC 3 cut(s) 332, 411, 786
FspBI CTAG 3 cut(s) 354, 483, 780
GlaI GCGC 1 cut(s) 865
GluI GCNGC 3 cut(s) 332, 411, 786
HaeIII GGCC 2 cut(s) 331, 826
HapII CCGG 3 cut(s) 944, 984, 1011
HhaI GCGC 1 cut(s) 866
Hin1II CATG 3 cut(s) 42, 568, 966
Hin6I GCGC 1 cut(s) 864
HinP1I GCGC 1 cut(s) 864
HindIII AAGCTT 2 cut(s) 462, 885
HinfI GANTC 2 cut(s) 795, 1024
HpaII CCGG 3 cut(s) 944, 984, 1011
HphI GGTGA 1 cut(s) 958
Hpy166II GTNNAC 2 cut(s) 97, 177
Hpy188I TCNGA 9 cut(s) 30, 52, 302, 432, 664, 682, 794, 1001, 1029
Hpy188III TCNNGA 6 cut(s) 131, 494, 565, 571, 715, 904
Hpy8I GTNNAC 2 cut(s) 97, 177
HpyCH4V TGCA 2 cut(s) 97, 194
HpyF10VI GCNNNNNNNGC 1 cut(s) 331
HpyF3I CTNAG 5 cut(s) 58, 171, 366, 608, 791
Hsp92II CATG 3 cut(s) 42, 568, 966
HspAI GCGC 1 cut(s) 864
Ksp22I TGATCA 1 cut(s) 567
Kzo9I GATC 4 cut(s) 567, 601, 622, 738
Lsp1109I GCAGC 1 cut(s) 397
LweI GCATC 2 cut(s) 203, 334
MaeI CTAG 3 cut(s) 354, 483, 780
MaeIII GTNAC 5 cut(s) 8, 34, 157, 856, 923
MalI GATC 4 cut(s) 569, 603, 624, 740
MboI GATC 4 cut(s) 567, 601, 622, 738
MboII GAAGA 6 cut(s) 98, 101, 221, 224, 387, 495
MflI RGATCY 1 cut(s) 738
MhlI GDGCHC 2 cut(s) 99, 130
MlsI TGGCCA 1 cut(s) 826
MluCI AATT 4 cut(s) 510, 766, 815, 899
MluNI TGGCCA 1 cut(s) 826
MmeI TCCRAC 3 cut(s) 545, 768, 979
Mox20I TGGCCA 1 cut(s) 826
MscI TGGCCA 1 cut(s) 826
MseI TTAA 5 cut(s) 245, 390, 644, 890, 975
MslI CAYNNNNRTG 3 cut(s) 143, 930, 961
Msp20I TGGCCA 1 cut(s) 826
MspCI CTTAAG 1 cut(s) 389
MspI CCGG 3 cut(s) 944, 984, 1011
MspR9I CCNGG 4 cut(s) 18, 749, 875, 1012
Mva1269I GAATGC 2 cut(s) 59, 256
MvaI CCWGG 3 cut(s) 18, 749, 875
MwoI GCNNNNNNNGC 1 cut(s) 331
NciI CCSGG 1 cut(s) 1012
NdeII GATC 4 cut(s) 567, 601, 622, 738
NlaIII CATG 3 cut(s) 42, 568, 966
NlaIV GGNNCC 1 cut(s) 441
NmuCI GTSAC 1 cut(s) 923
NspI RCATGY 1 cut(s) 42
PagI TCATGA 1 cut(s) 564
PasI CCCWGGG 1 cut(s) 874
PciI ACATGT 1 cut(s) 38
PctI GAATGC 2 cut(s) 59, 256
PfeI GAWTC 2 cut(s) 795, 1024
PflMI CCANNNNNTGG 1 cut(s) 968
PkrI GCNGC 3 cut(s) 333, 412, 787
PscI ACATGT 1 cut(s) 38
Psp6I CCWGG 3 cut(s) 16, 747, 873
PspGI CCWGG 3 cut(s) 16, 747, 873
PspN4I GGNNCC 1 cut(s) 441
PstNI CAGNNNCTG 1 cut(s) 161
PsuI RGATCY 1 cut(s) 738
RsaI GTAC 3 cut(s) 314, 360, 938
RsaNI GTAC 3 cut(s) 313, 359, 937
RseI CAYNNNNRTG 3 cut(s) 143, 930, 961
SaqAI TTAA 5 cut(s) 245, 390, 644, 890, 975
SatI GCNGC 3 cut(s) 332, 411, 786
Sau3AI GATC 4 cut(s) 567, 601, 622, 738
ScaI AGTACT 2 cut(s) 360, 938
ScrFI CCNGG 4 cut(s) 18, 749, 875, 1012
SduI GDGCHC 2 cut(s) 99, 130
SfaNI GCATC 2 cut(s) 203, 334
SmiMI CAYNNNNRTG 3 cut(s) 143, 930, 961
SmlI CTYRAG 2 cut(s) 129, 389
SmoI CTYRAG 2 cut(s) 129, 389
Sse9I AATT 4 cut(s) 510, 766, 815, 899
SsiI CCGC 3 cut(s) 332, 658, 786
SspMI CTAG 3 cut(s) 354, 483, 780
StyD4I CCNGG 4 cut(s) 16, 747, 873, 1010
StyI CCWWGG 1 cut(s) 669
TaqI TCGA 2 cut(s) 373, 548
TasI AATT 4 cut(s) 510, 766, 815, 899
TatI WGTACW 2 cut(s) 358, 936
TauI GCSGC 2 cut(s) 334, 788
TfiI GAWTC 2 cut(s) 795, 1024
Tru1I TTAA 5 cut(s) 245, 390, 644, 890, 975
Tru9I TTAA 5 cut(s) 245, 390, 644, 890, 975
TscAI CASTG 2 cut(s) 243, 834
TseFI GTSAC 1 cut(s) 923
TseI GCWGC 1 cut(s) 410
Tsp45I GTSAC 1 cut(s) 923
TspDTI ATGAA 2 cut(s) 222, 231
TspRI CASTG 2 cut(s) 243, 834
Van91I CCANNNNNTGG 1 cut(s) 968
Vha464I CTTAAG 1 cut(s) 389
VneI GTGCAC 1 cut(s) 95
XagI CCTNNNNNAGG 1 cut(s) 475
XapI RAATTY 3 cut(s) 766, 815, 899
XceI RCATGY 1 cut(s) 42
XspI CTAG 3 cut(s) 354, 483, 780
ZrmI AGTACT 2 cut(s) 360, 938
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.