Rroxscaffold_7G00173020

RNA recognition motif 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001927
Physical Location & Seq
Forward (+)
13116802 .. 13118035
1234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00173020.1

Sequence Viewer

Length: 786 bp
ATGCGCAACCCTATTTTGCTCACCATTTTCATCCCAATTAAAGCTCTCTCTGTGAAGTCCCAACATGTGAAGCTACTGCCACGGATCAAAACCCTAGAGTTGTTCCTCGGAGAAAGAGAAACAACTTCAGGCGCGAGAGGAACGCGTGGCCTAGTTCCCTGTTGGCCTGAAAGGAAAAACAAAAGGGGAAGGAATCTAGCTCCGAGGTTGAGTCTTGGCCCAAGTCATGGGGTTCAAGCATCTAGCTTTGCCAACGGGAAGGGTTCTGTGATTCCGTTTCCTGAAAGTCCAGATGAGCAAAATGGGTCTGAGGTTACTACAGTAATGATCAAGAACATCCCTTGTCAGCTTAGAAGGAGCGATTTGCTGCTCAAATTGAAAGAGCATTGCCGAGAGGAGAACAAAAAGGCTGATTCTTTGCACAAATCGGAGTTCAATTTCTTCTATTTACCACTGGATTTCAAAAAATTTTGGGAGAAGAAGAAGATTGCAAATCTTGGCTACGGTTTCGTGAATTTCACCACTGCTGTTGGAGCTCTTGGTTTCTATGAGAAATACCACAAGACTATGTGGAAGGAGGTCATTCAGAGCACCAAAATCTGTGAGATAACTTGTGCCAAGATCCCGCGTTTTGAGGCACTGAGGAAAAGTTTTAGACGCAGAGTACATCATGGTCTCACAAACGATTTTTTGCCTGTGATCTTGGGTCCTGCATGTGATGGAGTGAGGGAGTCCAACCACATACCTGTAGGACGACTTTTGGGTGCAGCGCAGATTGAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_2

Protein Analysis

261

Amino Acids

29.56

Weight (kDa)

9.91

Isoelectric Point (pI)

42.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_2 PF04059 106 - 218 1.1e-10 RNA recognition motif 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 5
AccB7I CCANNNNNTGG 1 cut(s) 227
AccII CGCG 3 cut(s) 134, 145, 628
AciI CCGC 1 cut(s) 626
AclWI GGATC 2 cut(s) 92, 616
AcsI RAATTY 2 cut(s) 467, 514
AcuI CTGAAG 1 cut(s) 111
AfaI GTAC 1 cut(s) 666
AfiI CCNNNNNNNGG 1 cut(s) 227
AflIII ACRYGT 2 cut(s) 64, 143
AgsI TTSAA 5 cut(s) 236, 379, 436, 463, 779
AluBI AGCT 6 cut(s) 44, 73, 200, 246, 349, 536
AluI AGCT 6 cut(s) 44, 73, 200, 246, 349, 536
Alw21I GWGCWC 2 cut(s) 538, 593
Alw26I GTCTC 1 cut(s) 680
AlwI GGATC 2 cut(s) 92, 616
AoxI GGCC 3 cut(s) 148, 164, 217
ApeKI GCWGC 2 cut(s) 367, 767
ApoI RAATTY 2 cut(s) 467, 514
AspLEI GCGC 3 cut(s) 6, 134, 772
AspS9I GGNCC 2 cut(s) 218, 707
AsuHPI GGTGA 2 cut(s) 13, 511
AvaII GGWCC 1 cut(s) 707
BanII GRGCYC 1 cut(s) 538
Bbv12I GWGCWC 2 cut(s) 538, 593
BbvI GCAGC 2 cut(s) 354, 779
BccI CCATC 1 cut(s) 713
BclI TGATCA 1 cut(s) 327
BcoDI GTCTC 1 cut(s) 680
BfaI CTAG 4 cut(s) 95, 152, 197, 243
BfmI CTRYAG 2 cut(s) 318, 747
BisI GCNGC 2 cut(s) 368, 768
BlsI GCNGC 2 cut(s) 369, 769
Bme18I GGWCC 1 cut(s) 707
BmgT120I GGNCC 2 cut(s) 218, 707
BmiI GGNNCC 1 cut(s) 708
BmsI GCATC 1 cut(s) 248
BsaI GGTCTC 1 cut(s) 680
BsaJI CCNNGG 3 cut(s) 80, 106, 203
Bsc4I CCNNNNNNNGG 1 cut(s) 227
Bse1I ACTGG 1 cut(s) 459
Bse3DI GCAATG 1 cut(s) 385
BseDI CCNNGG 3 cut(s) 80, 106, 203
BseGI GGATG 2 cut(s) 30, 336
BseLI CCNNNNNNNGG 1 cut(s) 227
BseMI GCAATG 1 cut(s) 385
BseMII CTCAG 2 cut(s) 300, 632
BseNI ACTGG 1 cut(s) 459
BseRI GAGGAG 1 cut(s) 410
BseXI GCAGC 2 cut(s) 354, 779
BsgI GTGCAG 1 cut(s) 786
Bsh1236I CGCG 3 cut(s) 134, 145, 628
BshFI GGCC 3 cut(s) 150, 166, 219
BsiHKAI GWGCWC 2 cut(s) 538, 593
BslFI GGGAC 1 cut(s) 43
BslI CCNNNNNNNGG 1 cut(s) 227
BsmAI GTCTC 1 cut(s) 680
BsmFI GGGAC 1 cut(s) 43
BsnI GGCC 3 cut(s) 150, 166, 219
Bso31I GGTCTC 1 cut(s) 680
Bsp1286I GDGCHC 2 cut(s) 538, 593
Bsp143I GATC 4 cut(s) 84, 327, 621, 699
BspACI CCGC 1 cut(s) 626
BspANI GGCC 3 cut(s) 150, 166, 219
BspCNI CTCAG 2 cut(s) 301, 633
BspFNI CGCG 3 cut(s) 134, 145, 628
BspLI GGNNCC 1 cut(s) 708
BspPI GGATC 2 cut(s) 92, 616
BspTNI GGTCTC 1 cut(s) 680
BsrDI GCAATG 1 cut(s) 385
BsrI ACTGG 1 cut(s) 459
BssECI CCNNGG 3 cut(s) 80, 106, 203
BssMI GATC 4 cut(s) 84, 327, 621, 699
Bst4CI ACNGT 2 cut(s) 322, 506
BstDEI CTNAG 3 cut(s) 309, 350, 641
BstDSI CCRYGG 1 cut(s) 80
BstF5I GGATG 2 cut(s) 30, 336
BstFNI CGCG 3 cut(s) 134, 145, 628
BstHHI GCGC 3 cut(s) 6, 134, 772
BstKTI GATC 4 cut(s) 87, 330, 624, 702
BstMAI GTCTC 1 cut(s) 680
BstMBI GATC 4 cut(s) 84, 327, 621, 699
BstMWI GCNNNNNNNGC 1 cut(s) 533
BstNSI RCATGY 2 cut(s) 68, 717
BstSFI CTRYAG 2 cut(s) 318, 747
BstUI CGCG 3 cut(s) 134, 145, 628
BstV1I GCAGC 2 cut(s) 354, 779
BstX2I RGATCY 1 cut(s) 621
BstYI RGATCY 1 cut(s) 621
BsuRI GGCC 3 cut(s) 150, 166, 219
BtgI CCRYGG 1 cut(s) 80
BtsCI GGATG 2 cut(s) 30, 336
BtsI GCAGTG 1 cut(s) 522
BtsIMutI CAGTG 3 cut(s) 452, 522, 638
CfoI GCGC 3 cut(s) 6, 134, 772
Cfr13I GGNCC 2 cut(s) 218, 707
CseI GACGC 1 cut(s) 666
Csp6I GTAC 1 cut(s) 665
CspCI CAANNNNNGTGG 2 cut(s) 511, 546
CviAII CATG 4 cut(s) 65, 227, 671, 714
CviQI GTAC 1 cut(s) 665
DdeI CTNAG 3 cut(s) 309, 350, 641
DpnI GATC 4 cut(s) 86, 329, 623, 701
DpnII GATC 4 cut(s) 84, 327, 621, 699
Ecl136II GAGCTC 1 cut(s) 536
Eco24I GRGCYC 1 cut(s) 538
Eco31I GGTCTC 1 cut(s) 680
Eco47I GGWCC 1 cut(s) 707
Eco53kI GAGCTC 1 cut(s) 536
Eco57I CTGAAG 1 cut(s) 111
EcoICRI GAGCTC 1 cut(s) 536
EcoO109I RGGNCCY 1 cut(s) 707
EcoT38I GRGCYC 1 cut(s) 538
FaeI CATG 4 cut(s) 68, 230, 674, 717
FaiI YATR 7 cut(s) 66, 228, 549, 569, 672, 715, 743
FaqI GGGAC 1 cut(s) 43
FatI CATG 4 cut(s) 64, 226, 670, 713
FauI CCCGC 1 cut(s) 633
FbaI TGATCA 1 cut(s) 327
Fnu4HI GCNGC 2 cut(s) 368, 768
FokI GGATG 2 cut(s) 17, 323
FriOI GRGCYC 1 cut(s) 538
Fsp4HI GCNGC 2 cut(s) 368, 768
FspBI CTAG 4 cut(s) 95, 152, 197, 243
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 3 cut(s) 5, 133, 771
GluI GCNGC 2 cut(s) 368, 768
HaeIII GGCC 3 cut(s) 150, 166, 219
HgaI GACGC 1 cut(s) 666
HhaI GCGC 3 cut(s) 6, 134, 772
Hin1II CATG 4 cut(s) 68, 230, 674, 717
Hin6I GCGC 3 cut(s) 4, 132, 770
HinP1I GCGC 3 cut(s) 4, 132, 770
HinfI GANTC 5 cut(s) 193, 211, 271, 413, 731
HphI GGTGA 2 cut(s) 13, 511
Hpy188I TCNGA 5 cut(s) 110, 204, 310, 430, 588
Hpy188III TCNNGA 4 cut(s) 281, 290, 331, 511
HpyAV CCTTC 4 cut(s) 183, 253, 348, 568
HpyCH4III ACNGT 2 cut(s) 322, 506
HpyCH4V TGCA 4 cut(s) 421, 491, 713, 767
HpyF10VI GCNNNNNNNGC 1 cut(s) 533
HpyF3I CTNAG 3 cut(s) 309, 350, 641
Hsp92II CATG 4 cut(s) 68, 230, 674, 717
HspAI GCGC 3 cut(s) 4, 132, 770
Ksp22I TGATCA 1 cut(s) 327
Kzo9I GATC 4 cut(s) 84, 327, 621, 699
LmnI GCTCC 3 cut(s) 205, 357, 533
LpnPI CCDG 9 cut(s) 114, 172, 180, 294, 303, 440, 708, 723, 759
Lsp1109I GCAGC 2 cut(s) 354, 779
LweI GCATC 1 cut(s) 248
MaeI CTAG 4 cut(s) 95, 152, 197, 243
MaeIII GTNAC 1 cut(s) 313
MalI GATC 4 cut(s) 86, 329, 623, 701
MboI GATC 4 cut(s) 84, 327, 621, 699
MboII GAAGA 4 cut(s) 433, 490, 493, 496
MflI RGATCY 1 cut(s) 621
MhlI GDGCHC 2 cut(s) 538, 593
MluCI AATT 5 cut(s) 36, 374, 436, 467, 514
MluI ACGCGT 1 cut(s) 143
MlyI GAGTC 2 cut(s) 220, 740
MmeI TCCRAC 2 cut(s) 511, 759
MnlI CCTC 9 cut(s) 116, 131, 198, 304, 388, 571, 628, 636, 720
MseI TTAA 1 cut(s) 39
MvnI CGCG 3 cut(s) 134, 145, 628
MwoI GCNNNNNNNGC 1 cut(s) 533
NdeII GATC 4 cut(s) 84, 327, 621, 699
NlaIII CATG 4 cut(s) 68, 230, 674, 717
NlaIV GGNNCC 1 cut(s) 708
NmeAIII GCCGAG 1 cut(s) 416
NsbI TGCGCA 1 cut(s) 5
NspI RCATGY 2 cut(s) 68, 717
PciI ACATGT 1 cut(s) 64
PfeI GAWTC 3 cut(s) 193, 271, 413
PflMI CCANNNNNTGG 1 cut(s) 227
PkrI GCNGC 2 cut(s) 369, 769
PleI GAGTC 2 cut(s) 219, 739
PpsI GAGTC 2 cut(s) 219, 739
PpuMI RGGWCCY 1 cut(s) 707
PscI ACATGT 1 cut(s) 64
Psp124BI GAGCTC 1 cut(s) 538
Psp5II RGGWCCY 1 cut(s) 707
PspN4I GGNNCC 1 cut(s) 708
PspPI GGNCC 2 cut(s) 218, 707
PspPPI RGGWCCY 1 cut(s) 707
PsuI RGATCY 1 cut(s) 621
RsaI GTAC 1 cut(s) 666
RsaNI GTAC 1 cut(s) 665
SacI GAGCTC 1 cut(s) 538
SaqAI TTAA 1 cut(s) 39
SatI GCNGC 2 cut(s) 368, 768
Sau3AI GATC 4 cut(s) 84, 327, 621, 699
Sau96I GGNCC 2 cut(s) 218, 707
SchI GAGTC 2 cut(s) 220, 740
SduI GDGCHC 2 cut(s) 538, 593
SfaNI GCATC 1 cut(s) 248
SfcI CTRYAG 2 cut(s) 318, 747
SinI GGWCC 1 cut(s) 707
Sse9I AATT 5 cut(s) 36, 374, 436, 467, 514
SsiI CCGC 1 cut(s) 626
SspMI CTAG 4 cut(s) 95, 152, 197, 243
SstI GAGCTC 1 cut(s) 538
TaaI ACNGT 2 cut(s) 322, 506
TasI AATT 5 cut(s) 36, 374, 436, 467, 514
TatI WGTACW 1 cut(s) 664
TfiI GAWTC 3 cut(s) 193, 271, 413
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TscAI CASTG 3 cut(s) 459, 529, 645
TseI GCWGC 2 cut(s) 367, 767
TspDTI ATGAA 1 cut(s) 19
TspGWI ACGGA 2 cut(s) 97, 264
TspRI CASTG 3 cut(s) 459, 529, 645
Van91I CCANNNNNTGG 1 cut(s) 227
VpaK11BI GGWCC 1 cut(s) 707
XapI RAATTY 2 cut(s) 467, 514
XceI RCATGY 2 cut(s) 68, 717
XspI CTAG 4 cut(s) 95, 152, 197, 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.