Rmu_sc0001331.1_g000006

RNA recognition motif 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001331.1
OG0001927
Physical Location & Seq
Forward (+)
40876 .. 42193
1318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001331.1_g000006.1.cds

Sequence Viewer

Length: 786 bp
atgggctccaaacctctcaactccaacgcccagccattttttgcaagccgtttccacaacttccagacctatgtgtgctacaactacccaatctatgctgatcatcatctgcatccaaatctttttcatcatcaattaaacccaaccgcagtggtggagtttcctagagttccgatgagacgacttcgaaaaaggaacggtcgaaaaaggaacattggtgctttgagtcgtggtgctactggggagggaggtgtaattccatttccttcaggtccggatcagcagcaaaatgggtcgtcagctactacaactatcatgataaagaatatcccaaaccagttcaggaggagtgatttactgggtatattgacggagcattgcttggtagaaaaccttgatgctgtggtgcggtctgatcctaacaagtccgagtttgattttgtgtatttgcccatggatttcaacaaaaataggggtagcaatttgggttacgcatttgtaaacttcaccggtgcaattggggcacaaagattctaccagcgttaccacaatttcgagtgggatgttgaacagaacaaaaaaacatgtgcaattacctgtgctaaaattcagggaaagaaagcactaatcgggaattttaggcgcaaagtattccggtgtgagtgtgacgagtacttgcctgtggttgtcgcacctccatgcgatggtgtgtcgcctccgaagctcacacctcttggaaagcttaggggtgcacccaagtaccccaccagtagattaagaatctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_2

Protein Analysis

261

Amino Acids

29.59

Weight (kDa)

9.81

Isoelectric Point (pI)

46.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 704
AccIII TCCGGA 1 cut(s) 274
AciI CCGC 2 cut(s) 147, 409
AclWI GGATC 2 cut(s) 285, 410
AcsI RAATTY 2 cut(s) 606, 634
AcuI CTGAAG 1 cut(s) 252
AfaI GTAC 2 cut(s) 674, 761
AfiI CCNNNNNNNGG 1 cut(s) 704
AflIII ACRYGT 1 cut(s) 584
AgeI ACCGGT 1 cut(s) 509
AgsI TTSAA 2 cut(s) 463, 569
AluBI AGCT 3 cut(s) 302, 724, 742
AluI AGCT 3 cut(s) 302, 724, 742
Alw21I GWGCWC 1 cut(s) 754
Alw26I GTCTC 1 cut(s) 172
Alw44I GTGCAC 1 cut(s) 750
AlwI GGATC 2 cut(s) 285, 410
Aor13HI TCCGGA 1 cut(s) 274
ApaLI GTGCAC 1 cut(s) 750
ApeKI GCWGC 1 cut(s) 283
ApoI RAATTY 2 cut(s) 606, 634
AsiGI ACCGGT 1 cut(s) 509
AspLEI GCGC 1 cut(s) 645
AspS9I GGNCC 1 cut(s) 272
AsuHPI GGTGA 1 cut(s) 499
AsuII TTCGAA 1 cut(s) 187
AvaII GGWCC 1 cut(s) 272
BaeGI GKGCMC 2 cut(s) 526, 754
BaeI ACNNNNGTAYC 2 cut(s) 743, 776
BanII GRGCYC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 754
BbvI GCAGC 1 cut(s) 295
BccI CCATC 1 cut(s) 698
BceAI ACGGC 1 cut(s) 33
BclI TGATCA 1 cut(s) 100
BcoDI GTCTC 1 cut(s) 172
BfaI CTAG 1 cut(s) 165
BisI GCNGC 1 cut(s) 284
BlsI GCNGC 1 cut(s) 285
BmcAI AGTACT 1 cut(s) 674
Bme18I GGWCC 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 272
BmiI GGNNCC 1 cut(s) 7
BmrI ACTGGG 2 cut(s) 249, 368
BmsI GCATC 2 cut(s) 121, 388
BmuI ACTGGG 2 cut(s) 249, 368
Bpu10I CCTNAGC 1 cut(s) 743
Bpu14I TTCGAA 1 cut(s) 187
BsaBI GATNNNNATC 1 cut(s) 105
BsaJI CCNNGG 1 cut(s) 453
BsaWI WCCGGW 3 cut(s) 274, 509, 654
Bsc4I CCNNNNNNNGG 1 cut(s) 704
Bse118I RCCGGY 1 cut(s) 509
Bse1I ACTGG 4 cut(s) 244, 337, 363, 768
Bse3DI GCAATG 1 cut(s) 376
Bse8I GATNNNNATC 1 cut(s) 105
BseAI TCCGGA 1 cut(s) 274
BseDI CCNNGG 1 cut(s) 453
BseGI GGATG 2 cut(s) 112, 568
BseJI GATNNNNATC 1 cut(s) 105
BseLI CCNNNNNNNGG 1 cut(s) 704
BseMI GCAATG 1 cut(s) 376
BseNI ACTGG 4 cut(s) 244, 337, 363, 768
BseRI GAGGAG 1 cut(s) 361
BseSI GKGCMC 2 cut(s) 526, 754
BseXI GCAGC 1 cut(s) 295
BseYI CCCAGC 1 cut(s) 30
Bsh1285I CGRYCG 1 cut(s) 202
BshTI ACCGGT 1 cut(s) 509
BsiEI CGRYCG 1 cut(s) 202
BsiHKAI GWGCWC 1 cut(s) 754
BsiSI CCGG 3 cut(s) 275, 510, 655
BslI CCNNNNNNNGG 1 cut(s) 704
BsmAI GTCTC 1 cut(s) 172
BsmBI CGTCTC 1 cut(s) 172
Bsp119I TTCGAA 1 cut(s) 187
Bsp1286I GDGCHC 3 cut(s) 8, 526, 754
Bsp13I TCCGGA 1 cut(s) 274
Bsp143I GATC 3 cut(s) 100, 277, 415
Bsp19I CCATGG 1 cut(s) 453
BspACI CCGC 2 cut(s) 147, 409
BspEI TCCGGA 1 cut(s) 274
BspHI TCATGA 1 cut(s) 315
BspLI GGNNCC 1 cut(s) 7
BspPI GGATC 2 cut(s) 285, 410
BspT104I TTCGAA 1 cut(s) 187
BsrDI GCAATG 1 cut(s) 376
BsrFI RCCGGY 1 cut(s) 509
BsrI ACTGG 4 cut(s) 244, 337, 363, 768
BssAI RCCGGY 1 cut(s) 509
BssECI CCNNGG 1 cut(s) 453
BssMI GATC 3 cut(s) 100, 277, 415
BssT1I CCWWGG 1 cut(s) 453
Bst4CI ACNGT 1 cut(s) 200
BstBI TTCGAA 1 cut(s) 187
BstC8I GCNNGC 1 cut(s) 46
BstDEI CTNAG 1 cut(s) 743
BstDSI CCRYGG 1 cut(s) 453
BstF5I GGATG 2 cut(s) 112, 568
BstHHI GCGC 1 cut(s) 645
BstKTI GATC 3 cut(s) 103, 280, 418
BstMAI GTCTC 1 cut(s) 172
BstMBI GATC 3 cut(s) 100, 277, 415
BstMCI CGRYCG 1 cut(s) 202
BstMWI GCNNNNNNNGC 2 cut(s) 521, 721
BstNSI RCATGY 1 cut(s) 588
BstSLI GKGCMC 2 cut(s) 526, 754
BstV1I GCAGC 1 cut(s) 295
BtgI CCRYGG 1 cut(s) 453
BtgZI GCGATG 1 cut(s) 717
BtsCI GGATG 2 cut(s) 112, 568
BtsI GCAGTG 1 cut(s) 156
BtsIMutI CAGTG 1 cut(s) 156
Cac8I GCNNGC 1 cut(s) 46
CciI TCATGA 1 cut(s) 315
CfoI GCGC 1 cut(s) 645
Cfr10I RCCGGY 1 cut(s) 509
Cfr13I GGNCC 1 cut(s) 272
Csp6I GTAC 2 cut(s) 673, 760
CspAI ACCGGT 1 cut(s) 509
CspCI CAANNNNNGTGG 2 cut(s) 132, 167
CviAII CATG 4 cut(s) 316, 454, 585, 699
CviJI RGCY 6 cut(s) 6, 34, 48, 302, 724, 742
CviKI_1 RGCY 6 cut(s) 6, 34, 48, 302, 724, 742
CviQI GTAC 2 cut(s) 673, 760
DdeI CTNAG 1 cut(s) 743
DpnI GATC 3 cut(s) 102, 279, 417
DpnII GATC 3 cut(s) 100, 277, 415
Eco130I CCWWGG 1 cut(s) 453
Eco24I GRGCYC 1 cut(s) 8
Eco47I GGWCC 1 cut(s) 272
Eco57I CTGAAG 1 cut(s) 252
EcoT14I CCWWGG 1 cut(s) 453
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 453
Esp3I CGTCTC 1 cut(s) 172
FaeI CATG 4 cut(s) 319, 457, 588, 702
FaiI YATR 7 cut(s) 72, 96, 317, 365, 455, 586, 700
FatI CATG 4 cut(s) 315, 453, 584, 698
FbaI TGATCA 1 cut(s) 100
Fnu4HI GCNGC 1 cut(s) 284
FokI GGATG 2 cut(s) 99, 575
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 1 cut(s) 284
FspBI CTAG 1 cut(s) 165
GlaI GCGC 1 cut(s) 644
GluI GCNGC 1 cut(s) 284
GsaI CCCAGC 1 cut(s) 34
HapII CCGG 3 cut(s) 275, 510, 655
HhaI GCGC 1 cut(s) 645
Hin1II CATG 4 cut(s) 319, 457, 588, 702
Hin6I GCGC 1 cut(s) 643
HinP1I GCGC 1 cut(s) 643
HindIII AAGCTT 1 cut(s) 740
HinfI GANTC 3 cut(s) 226, 531, 780
HpaII CCGG 3 cut(s) 275, 510, 655
HphI GGTGA 1 cut(s) 499
Hpy166II GTNNAC 2 cut(s) 502, 752
Hpy188I TCNGA 4 cut(s) 174, 415, 430, 720
Hpy188III TCNNGA 5 cut(s) 64, 275, 316, 343, 631
Hpy8I GTNNAC 2 cut(s) 502, 752
HpyAV CCTTC 1 cut(s) 276
HpyCH4III ACNGT 1 cut(s) 200
HpyCH4V TGCA 5 cut(s) 44, 112, 515, 590, 752
HpyF10VI GCNNNNNNNGC 2 cut(s) 521, 721
HpyF3I CTNAG 1 cut(s) 743
Hsp92II CATG 4 cut(s) 319, 457, 588, 702
HspAI GCGC 1 cut(s) 643
Kpn2I TCCGGA 1 cut(s) 274
Ksp22I TGATCA 1 cut(s) 100
Kzo9I GATC 3 cut(s) 100, 277, 415
LmnI GCTCC 2 cut(s) 11, 373
Lsp1109I GCAGC 1 cut(s) 295
LweI GCATC 2 cut(s) 121, 388
MaeI CTAG 1 cut(s) 165
MaeIII GTNAC 3 cut(s) 488, 542, 665
MalI GATC 3 cut(s) 102, 279, 417
MboI GATC 3 cut(s) 100, 277, 415
MfeI CAATTG 1 cut(s) 516
MhlI GDGCHC 3 cut(s) 8, 526, 754
MluCI AATT 8 cut(s) 134, 255, 481, 516, 550, 591, 606, 634
MlyI GAGTC 1 cut(s) 235
MmeI TCCRAC 1 cut(s) 48
MnlI CCTC 7 cut(s) 24, 238, 242, 339, 705, 726, 741
MroI TCCGGA 1 cut(s) 274
MseI TTAA 2 cut(s) 137, 776
MslI CAYNNNNRTG 1 cut(s) 697
MspI CCGG 3 cut(s) 275, 510, 655
MunI CAATTG 1 cut(s) 516
MwoI GCNNNNNNNGC 2 cut(s) 521, 721
NcoI CCATGG 1 cut(s) 453
NdeII GATC 3 cut(s) 100, 277, 415
NlaIII CATG 4 cut(s) 319, 457, 588, 702
NlaIV GGNNCC 1 cut(s) 7
NmuCI GTSAC 1 cut(s) 665
NspI RCATGY 1 cut(s) 588
NspV TTCGAA 1 cut(s) 187
PagI TCATGA 1 cut(s) 315
PciI ACATGT 1 cut(s) 584
PfeI GAWTC 2 cut(s) 531, 780
PflMI CCANNNNNTGG 1 cut(s) 704
PinAI ACCGGT 1 cut(s) 509
PkrI GCNGC 1 cut(s) 285
PleI GAGTC 1 cut(s) 234
PpsI GAGTC 1 cut(s) 234
PscI ACATGT 1 cut(s) 584
PspFI CCCAGC 1 cut(s) 30
PspN4I GGNNCC 1 cut(s) 7
PspPI GGNCC 1 cut(s) 272
RsaI GTAC 2 cut(s) 674, 761
RsaNI GTAC 2 cut(s) 673, 760
RseI CAYNNNNRTG 1 cut(s) 697
SaqAI TTAA 2 cut(s) 137, 776
SatI GCNGC 1 cut(s) 284
Sau3AI GATC 3 cut(s) 100, 277, 415
Sau96I GGNCC 1 cut(s) 272
ScaI AGTACT 1 cut(s) 674
SchI GAGTC 1 cut(s) 235
SduI GDGCHC 3 cut(s) 8, 526, 754
SfaNI GCATC 2 cut(s) 121, 388
SfuI TTCGAA 1 cut(s) 187
SgrAI CRCCGGYG 1 cut(s) 509
SinI GGWCC 1 cut(s) 272
SmiMI CAYNNNNRTG 1 cut(s) 697
Sse9I AATT 8 cut(s) 134, 255, 481, 516, 550, 591, 606, 634
SsiI CCGC 2 cut(s) 147, 409
SspMI CTAG 1 cut(s) 165
StyI CCWWGG 1 cut(s) 453
TaaI ACNGT 1 cut(s) 200
TaqI TCGA 3 cut(s) 187, 202, 555
TasI AATT 8 cut(s) 134, 255, 481, 516, 550, 591, 606, 634
TatI WGTACW 1 cut(s) 672
TfiI GAWTC 2 cut(s) 531, 780
Tru1I TTAA 2 cut(s) 137, 776
Tru9I TTAA 2 cut(s) 137, 776
TscAI CASTG 1 cut(s) 156
TseFI GTSAC 1 cut(s) 665
TseI GCWGC 1 cut(s) 283
Tsp45I GTSAC 1 cut(s) 665
TspDTI ATGAA 1 cut(s) 116
TspGWI ACGGA 1 cut(s) 386
TspRI CASTG 1 cut(s) 156
Van91I CCANNNNNTGG 1 cut(s) 704
VneI GTGCAC 1 cut(s) 750
VpaK11BI GGWCC 1 cut(s) 272
XapI RAATTY 2 cut(s) 606, 634
XceI RCATGY 1 cut(s) 588
XspI CTAG 1 cut(s) 165
ZrmI AGTACT 1 cut(s) 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.