RLG00000011841

RNA recognition motif 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001927
Physical Location & Seq
Forward (+)
13216044 .. 13217305
1262 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011841

Sequence Viewer

Length: 906 bp
ATGTCTCGCAGACCTCTAAACCCATACGCGCAACCCTATTTTGCTCACCATTTTCATCCCAATCAAAGCTCTCTCTGTGAAGTCCCAACATGTGAAGCTACTGCCACGGATCAAAACCCTAGAGTTGTTGTTCCTCGGAGAAAGAGAAACAACTTCAGGCGCGAGAGGAACGCGGGGCCTAGGTTGAGGTCTTCACAAACAAGCTTGGCCGAGAGCCCAAATCATAAAGCTTCAAACTTTGCATCAACCAGTAACTGCGGTGGTGCTGTAGTTCCCTGTTCTTCAATGCCTGAAAGGAAAAACAATAGGGGAAGGAATCTAGCTCCAAGGTTGAGTCTTGGCCCAAGTCATGGGGCTCAAGCATCTAGCTTTGCCAATGGGAAGGGTTCTGTGATTCCTTTTCCTGAAAGTCCAGATGAGCAAAATGGGTCTGAGGTTACTACTGTAATGATCAAGAACATCCCTTGTCAGCGTAGGAGCGATTTGCTGCTCATATTGAAAGAGCACTGCCGAGAGGAGAACAAAAAGGTTGATTCTTTGCACAAATCGGAGTTCAATTTCTTCTATTTACCACTGGATTTCAAAAAATTTTGGGAGAAGAAGAAGATTGCAAATCTTGGCTACGGTTTCGTGAATTTCACCACTGCTGTAGGAGCACTAGGTTTCTATGAGAAATACCACAAGACTATGTGGAAGGAGGTCATTCAGAGCACCAAAATCTGTGAGATAACTTGCGCCAAGATCCAGGGTTTTGAGGCACTGAGGAGAAGTTTTAGACGCAGAGTATATCATGGTCTCACAAACGATTTTTTGCCTGTGATCTTGGCTTCTGCATGTGATGGAGTGAGGGAGTCCAACCACATACCTGTAGGACGACTTTTGGGTGCAGCGGAGATTGAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_2

Protein Analysis

302

Amino Acids

33.89

Weight (kDa)

9.68

Isoelectric Point (pI)

60.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_2 PF04059 147 - 258 1.1e-13 RNA recognition motif 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 350
AccII CGCG 3 cut(s) 29, 162, 173
AciI CCGC 3 cut(s) 173, 258, 890
AclWI GGATC 2 cut(s) 117, 736
AcoI YGGCCR 1 cut(s) 207
AcsI RAATTY 2 cut(s) 587, 634
AcuI CTGAAG 1 cut(s) 139
AfiI CCNNNNNNNGG 1 cut(s) 350
AflIII ACRYGT 1 cut(s) 89
AgsI TTSAA 6 cut(s) 234, 285, 499, 556, 583, 899
AjnI CCWGG 1 cut(s) 744
AluBI AGCT 6 cut(s) 69, 98, 204, 230, 323, 369
AluI AGCT 6 cut(s) 69, 98, 204, 230, 323, 369
Alw21I GWGCWC 3 cut(s) 507, 658, 713
Alw26I GTCTC 2 cut(s) 9, 800
AlwI GGATC 2 cut(s) 117, 736
AlwNI CAGNNNCTG 1 cut(s) 255
AoxI GGCC 3 cut(s) 176, 207, 340
ApeKI GCWGC 2 cut(s) 487, 887
ApoI RAATTY 2 cut(s) 587, 634
AspA2I CCTAGG 1 cut(s) 179
AspLEI GCGC 3 cut(s) 31, 162, 737
AspS9I GGNCC 2 cut(s) 176, 341
AsuHPI GGTGA 2 cut(s) 38, 631
AvrII CCTAGG 1 cut(s) 179
BanII GRGCYC 2 cut(s) 218, 358
BbsI GAAGAC 1 cut(s) 183
Bbv12I GWGCWC 3 cut(s) 507, 658, 713
BbvI GCAGC 2 cut(s) 474, 899
BccI CCATC 1 cut(s) 833
BciT130I CCWGG 1 cut(s) 746
BclI TGATCA 1 cut(s) 450
BcoDI GTCTC 2 cut(s) 9, 800
BfaI CTAG 5 cut(s) 120, 180, 320, 366, 659
BfmI CTRYAG 3 cut(s) 267, 648, 867
BisI GCNGC 2 cut(s) 488, 888
BlnI CCTAGG 1 cut(s) 179
BlsI GCNGC 2 cut(s) 489, 889
Bme1390I CCNGG 1 cut(s) 746
BmgT120I GGNCC 2 cut(s) 176, 341
BmiI GGNNCC 1 cut(s) 177
BmrFI CCNGG 1 cut(s) 746
BmsI GCATC 2 cut(s) 251, 371
BpiI GAAGAC 1 cut(s) 183
BpuEI CTTGAG 1 cut(s) 342
BsaI GGTCTC 1 cut(s) 800
BsaJI CCNNGG 5 cut(s) 105, 134, 179, 326, 745
Bsc4I CCNNNNNNNGG 1 cut(s) 350
Bse1I ACTGG 2 cut(s) 249, 579
BseBI CCWGG 1 cut(s) 746
BseDI CCNNGG 5 cut(s) 105, 134, 179, 326, 745
BseGI GGATG 2 cut(s) 55, 459
BseLI CCNNNNNNNGG 1 cut(s) 350
BseMII CTCAG 2 cut(s) 423, 752
BseNI ACTGG 2 cut(s) 249, 579
BseRI GAGGAG 2 cut(s) 530, 778
BseXI GCAGC 2 cut(s) 474, 899
BsgI GTGCAG 1 cut(s) 906
Bsh1236I CGCG 3 cut(s) 29, 162, 173
BshFI GGCC 3 cut(s) 178, 209, 342
BsiHKAI GWGCWC 3 cut(s) 507, 658, 713
BslFI GGGAC 1 cut(s) 68
BslI CCNNNNNNNGG 1 cut(s) 350
BsmAI GTCTC 2 cut(s) 9, 800
BsmFI GGGAC 1 cut(s) 68
BsnI GGCC 3 cut(s) 178, 209, 342
Bso31I GGTCTC 1 cut(s) 800
Bsp1286I GDGCHC 5 cut(s) 218, 358, 507, 658, 713
Bsp143I GATC 4 cut(s) 109, 450, 741, 819
BspACI CCGC 3 cut(s) 173, 258, 890
BspANI GGCC 3 cut(s) 178, 209, 342
BspCNI CTCAG 2 cut(s) 424, 753
BspFNI CGCG 3 cut(s) 29, 162, 173
BspLI GGNNCC 1 cut(s) 177
BspPI GGATC 2 cut(s) 117, 736
BspTNI GGTCTC 1 cut(s) 800
BsrI ACTGG 2 cut(s) 249, 579
BssECI CCNNGG 5 cut(s) 105, 134, 179, 326, 745
BssMI GATC 4 cut(s) 109, 450, 741, 819
BssT1I CCWWGG 2 cut(s) 179, 326
Bst2UI CCWGG 1 cut(s) 746
Bst4CI ACNGT 2 cut(s) 445, 626
BstDEI CTNAG 2 cut(s) 432, 761
BstDSI CCRYGG 1 cut(s) 105
BstF5I GGATG 2 cut(s) 55, 459
BstFNI CGCG 3 cut(s) 29, 162, 173
BstHHI GCGC 3 cut(s) 31, 162, 737
BstKTI GATC 4 cut(s) 112, 453, 744, 822
BstMAI GTCTC 2 cut(s) 9, 800
BstMBI GATC 4 cut(s) 109, 450, 741, 819
BstMWI GCNNNNNNNGC 1 cut(s) 653
BstNI CCWGG 1 cut(s) 746
BstNSI RCATGY 2 cut(s) 93, 837
BstSCI CCNGG 1 cut(s) 744
BstSFI CTRYAG 3 cut(s) 267, 648, 867
BstUI CGCG 3 cut(s) 29, 162, 173
BstV1I GCAGC 2 cut(s) 474, 899
BstV2I GAAGAC 1 cut(s) 183
BstX2I RGATCY 1 cut(s) 741
BstYI RGATCY 1 cut(s) 741
BsuRI GGCC 3 cut(s) 178, 209, 342
BtgI CCRYGG 1 cut(s) 105
BtsCI GGATG 2 cut(s) 55, 459
BtsI GCAGTG 2 cut(s) 505, 642
BtsIMutI CAGTG 4 cut(s) 505, 572, 642, 758
CaiI CAGNNNCTG 1 cut(s) 255
CfoI GCGC 3 cut(s) 31, 162, 737
Cfr13I GGNCC 2 cut(s) 176, 341
CseI GACGC 1 cut(s) 786
CviAII CATG 4 cut(s) 90, 350, 791, 834
DdeI CTNAG 2 cut(s) 432, 761
DpnI GATC 4 cut(s) 111, 452, 743, 821
DpnII GATC 4 cut(s) 109, 450, 741, 819
EaeI YGGCCR 1 cut(s) 207
Eco130I CCWWGG 2 cut(s) 179, 326
Eco24I GRGCYC 2 cut(s) 218, 358
Eco31I GGTCTC 1 cut(s) 800
Eco57I CTGAAG 1 cut(s) 139
EcoO109I RGGNCCY 1 cut(s) 176
EcoRII CCWGG 1 cut(s) 744
EcoT14I CCWWGG 2 cut(s) 179, 326
EcoT38I GRGCYC 2 cut(s) 218, 358
ErhI CCWWGG 2 cut(s) 179, 326
FaeI CATG 4 cut(s) 93, 353, 794, 837
FaqI GGGAC 1 cut(s) 68
FatI CATG 4 cut(s) 89, 349, 790, 833
FauI CCCGC 1 cut(s) 166
FbaI TGATCA 1 cut(s) 450
Fnu4HI GCNGC 2 cut(s) 488, 888
FokI GGATG 2 cut(s) 42, 446
FriOI GRGCYC 2 cut(s) 218, 358
Fsp4HI GCNGC 2 cut(s) 488, 888
FspBI CTAG 5 cut(s) 120, 180, 320, 366, 659
GlaI GCGC 3 cut(s) 30, 161, 736
GluI GCNGC 2 cut(s) 488, 888
HaeIII GGCC 3 cut(s) 178, 209, 342
HgaI GACGC 1 cut(s) 786
HhaI GCGC 3 cut(s) 31, 162, 737
Hin1II CATG 4 cut(s) 93, 353, 794, 837
Hin6I GCGC 3 cut(s) 29, 160, 735
HinP1I GCGC 3 cut(s) 29, 160, 735
HindIII AAGCTT 2 cut(s) 202, 228
HinfI GANTC 5 cut(s) 316, 334, 394, 533, 851
HphI GGTGA 2 cut(s) 38, 631
Hpy188I TCNGA 4 cut(s) 138, 433, 550, 708
Hpy188III TCNNGA 4 cut(s) 404, 413, 454, 631
HpyAV CCTTC 3 cut(s) 306, 376, 688
HpyCH4III ACNGT 2 cut(s) 445, 626
HpyCH4V TGCA 5 cut(s) 242, 541, 611, 833, 887
HpyF10VI GCNNNNNNNGC 1 cut(s) 653
HpyF3I CTNAG 2 cut(s) 432, 761
Hsp92II CATG 4 cut(s) 93, 353, 794, 837
HspAI GCGC 3 cut(s) 29, 160, 735
Ksp22I TGATCA 1 cut(s) 450
Kzo9I GATC 4 cut(s) 109, 450, 741, 819
LmnI GCTCC 3 cut(s) 328, 477, 653
Lsp1109I GCAGC 2 cut(s) 474, 899
LweI GCATC 2 cut(s) 251, 371
MaeI CTAG 5 cut(s) 120, 180, 320, 366, 659
MaeIII GTNAC 2 cut(s) 251, 436
MalI GATC 4 cut(s) 111, 452, 743, 821
MboI GATC 4 cut(s) 109, 450, 741, 819
MboII GAAGA 6 cut(s) 183, 273, 553, 610, 613, 616
MflI RGATCY 1 cut(s) 741
MhlI GDGCHC 5 cut(s) 218, 358, 507, 658, 713
MluCI AATT 3 cut(s) 556, 587, 634
MlyI GAGTC 2 cut(s) 343, 860
MmeI TCCRAC 1 cut(s) 879
MspA1I CMGCKG 1 cut(s) 890
MspR9I CCNGG 1 cut(s) 746
MvaI CCWGG 1 cut(s) 746
MvnI CGCG 3 cut(s) 29, 162, 173
MwoI GCNNNNNNNGC 1 cut(s) 653
NdeII GATC 4 cut(s) 109, 450, 741, 819
NlaIII CATG 4 cut(s) 93, 353, 794, 837
NlaIV GGNNCC 1 cut(s) 177
NmeAIII GCCGAG 2 cut(s) 235, 536
NspI RCATGY 2 cut(s) 93, 837
PciI ACATGT 1 cut(s) 89
PfeI GAWTC 3 cut(s) 316, 394, 533
PflMI CCANNNNNTGG 1 cut(s) 350
PkrI GCNGC 2 cut(s) 489, 889
PleI GAGTC 2 cut(s) 342, 859
PpsI GAGTC 2 cut(s) 342, 859
PscI ACATGT 1 cut(s) 89
Psp6I CCWGG 1 cut(s) 744
PspGI CCWGG 1 cut(s) 744
PspN4I GGNNCC 1 cut(s) 177
PspPI GGNCC 2 cut(s) 176, 341
PstNI CAGNNNCTG 1 cut(s) 255
PsuI RGATCY 1 cut(s) 741
SatI GCNGC 2 cut(s) 488, 888
Sau3AI GATC 4 cut(s) 109, 450, 741, 819
Sau96I GGNCC 2 cut(s) 176, 341
SchI GAGTC 2 cut(s) 343, 860
ScrFI CCNGG 1 cut(s) 746
SduI GDGCHC 5 cut(s) 218, 358, 507, 658, 713
SfaNI GCATC 2 cut(s) 251, 371
SfcI CTRYAG 3 cut(s) 267, 648, 867
SmlI CTYRAG 1 cut(s) 357
SmoI CTYRAG 1 cut(s) 357
Sse9I AATT 3 cut(s) 556, 587, 634
SsiI CCGC 3 cut(s) 173, 258, 890
SspMI CTAG 5 cut(s) 120, 180, 320, 366, 659
StyD4I CCNGG 1 cut(s) 744
StyI CCWWGG 2 cut(s) 179, 326
TaaI ACNGT 2 cut(s) 445, 626
TasI AATT 3 cut(s) 556, 587, 634
TfiI GAWTC 3 cut(s) 316, 394, 533
TscAI CASTG 4 cut(s) 512, 579, 649, 765
TseI GCWGC 2 cut(s) 487, 887
TspDTI ATGAA 1 cut(s) 44
TspGWI ACGGA 1 cut(s) 122
TspRI CASTG 4 cut(s) 512, 579, 649, 765
Van91I CCANNNNNTGG 1 cut(s) 350
XapI RAATTY 2 cut(s) 587, 634
XceI RCATGY 2 cut(s) 93, 837
XmaJI CCTAGG 1 cut(s) 179
XspI CTAG 5 cut(s) 120, 180, 320, 366, 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.