RchiOBHm_Chr6g0294631

RNA recognition motif 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001927
Physical Location & Seq
Reverse (-)
56854243 .. 56856327
2085 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26443

Sequence Viewer

Length: 864 bp
ATGTCCTCAAAATCTCTCAACCCAAATGCCAAATCCTTCTTCCACTTTCCGTCCATCACGTACACTAAACCCCTCAACCCTAATGCCAACCCATTTCACATTCAGACTTATCTCTGCAACCCTTCTTGGCAGTGGCGACCATTTATCCCAAAAACTCGTAACAAATTAACAATGGATAATCTTCCAAGAGTGAGACAGTTTTCCCGTACTATGAACCACAATATTCCGGTCAGGCGTAAGCATCATGTCTTCTCCGGTCCTTCCGTTCATGTATGGAAAGCCAAGCCTGAAGAGCACAAGGATCGCAGGAACGACAAATTATTGGAGAAGAAGAGCAGCAAAGGGAAAGTCATTCCTTTTCCTTTATGTTCATCTGACCAGAAACCATTTTGCACCACAGTGATGATCAAGAATATTCCCAATCAGTTCCGGAGGACTAATTTGGTGACCATATTGAGAAGCCACTGCAAGGAGGAAAACAAAAAGTCTCAGTACAAATCTGAGTTCGATTTTGTGTATTTGCCAATGGATTTCCAGCAATACTGGGAGAAGAAGAGGGTTGTAAATCTGGGTTATGCCTTTGTCAACTTCACCAGTTACGTTGCTGCTTTGAGGTTCTTTCAATACTACCACAACCGAGAATGGAAGGTGAAGCTTAACAACAAAATTTGTCAAGTTACCTGCGCCAAAATCCAGGGAAAGGAAGCTCTTATGCGGCGATTTGAGAACAGTGTATTCTGGTGCCACACCGATATGTACTTGCCTGTGGTTTTGGAACCAGCCTGTGACGGTGAGCTTCTGCCCAACCTCATCAGCGTTGGACGCCGTGTTTGTGCACCTTCGAGGAAACCCAGAACAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_2

Protein Analysis

287

Amino Acids

34.01

Weight (kDa)

10.05

Isoelectric Point (pI)

52.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_2 PF04059 132 - 241 4.3e-18 RNA recognition motif 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 689
AccB1I GGYRCC 1 cut(s) 741
AccIII TCCGGA 1 cut(s) 429
AciI CCGC 1 cut(s) 715
AclWI GGATC 1 cut(s) 309
AcsI RAATTY 1 cut(s) 666
AcuI CTGAAG 1 cut(s) 309
AcyI GRCGYC 1 cut(s) 823
AfaI GTAC 4 cut(s) 62, 208, 494, 758
AfiI CCNNNNNNNGG 2 cut(s) 469, 700
AgsI TTSAA 1 cut(s) 623
AjnI CCWGG 1 cut(s) 693
AjuI GAANNNNNNNTTGG 2 cut(s) 23, 55
AleI CACNNNNGTG 1 cut(s) 398
AluBI AGCT 3 cut(s) 655, 707, 796
AluI AGCT 3 cut(s) 655, 707, 796
Alw21I GWGCWC 2 cut(s) 297, 838
Alw26I GTCTC 2 cut(s) 187, 492
Alw44I GTGCAC 1 cut(s) 834
AlwI GGATC 1 cut(s) 309
Aor13HI TCCGGA 1 cut(s) 429
ApaLI GTGCAC 1 cut(s) 834
ApeKI GCWGC 2 cut(s) 336, 605
ApoI RAATTY 1 cut(s) 666
ArsI GACNNNNNNTTYG 4 cut(s) 333, 365, 813, 845
AspLEI GCGC 1 cut(s) 686
AspS9I GGNCC 1 cut(s) 257
AsuHPI GGTGA 4 cut(s) 457, 583, 661, 803
AvaII GGWCC 1 cut(s) 257
BaeGI GKGCMC 1 cut(s) 838
BanI GGYRCC 1 cut(s) 741
BbsI GAAGAC 1 cut(s) 241
Bbv12I GWGCWC 2 cut(s) 297, 838
BbvI GCAGC 2 cut(s) 348, 592
BccI CCATC 1 cut(s) 62
BceAI ACGGC 1 cut(s) 810
BcgI CGANNNNNNTGC 2 cut(s) 284, 318
BciT130I CCWGG 1 cut(s) 695
BclI TGATCA 1 cut(s) 405
BcoDI GTCTC 2 cut(s) 187, 492
BfuAI ACCTGC 1 cut(s) 689
BisI GCNGC 3 cut(s) 337, 606, 716
BlsI GCNGC 3 cut(s) 338, 607, 717
Bme1390I CCNGG 1 cut(s) 695
Bme18I GGWCC 1 cut(s) 257
BmgT120I GGNCC 1 cut(s) 257
BmiI GGNNCC 2 cut(s) 743, 777
BmrFI CCNGG 1 cut(s) 695
BmrI ACTGGG 1 cut(s) 553
BmsI GCATC 1 cut(s) 250
BmuI ACTGGG 1 cut(s) 553
BpiI GAAGAC 1 cut(s) 241
BsaAI YACGTR 1 cut(s) 60
BsaHI GRCGYC 1 cut(s) 823
BsaJI CCNNGG 1 cut(s) 694
BsaWI WCCGGW 3 cut(s) 226, 254, 429
Bsc4I CCNNNNNNNGG 2 cut(s) 469, 700
Bse1I ACTGG 2 cut(s) 548, 594
BseAI TCCGGA 1 cut(s) 429
BseBI CCWGG 1 cut(s) 695
BseDI CCNNGG 1 cut(s) 694
BseLI CCNNNNNNNGG 2 cut(s) 469, 700
BseMII CTCAG 2 cut(s) 492, 503
BseNI ACTGG 2 cut(s) 548, 594
BseSI GKGCMC 1 cut(s) 838
BseXI GCAGC 2 cut(s) 348, 592
BshNI GGYRCC 1 cut(s) 741
BsiHKAI GWGCWC 2 cut(s) 297, 838
BsiSI CCGG 3 cut(s) 227, 255, 430
BslI CCNNNNNNNGG 2 cut(s) 469, 700
BsmAI GTCTC 2 cut(s) 187, 492
Bsp1286I GDGCHC 2 cut(s) 297, 838
Bsp13I TCCGGA 1 cut(s) 429
Bsp143I GATC 2 cut(s) 301, 405
BspACI CCGC 1 cut(s) 715
BspCNI CTCAG 2 cut(s) 493, 502
BspEI TCCGGA 1 cut(s) 429
BspLI GGNNCC 2 cut(s) 743, 777
BspMI ACCTGC 1 cut(s) 689
BspPI GGATC 1 cut(s) 309
BspQI GCTCTTC 2 cut(s) 285, 326
BspT107I GGYRCC 1 cut(s) 741
BsrI ACTGG 2 cut(s) 548, 594
BssECI CCNNGG 1 cut(s) 694
BssMI GATC 2 cut(s) 301, 405
BssNI GRCGYC 1 cut(s) 823
Bst2UI CCWGG 1 cut(s) 695
Bst4CI ACNGT 4 cut(s) 198, 400, 731, 791
Bst6I CTCTTC 3 cut(s) 285, 326, 548
BstACI GRCGYC 1 cut(s) 823
BstBAI YACGTR 1 cut(s) 60
BstDEI CTNAG 2 cut(s) 489, 501
BstEII GGTNACC 1 cut(s) 445
BstHHI GCGC 1 cut(s) 686
BstKTI GATC 2 cut(s) 304, 408
BstMAI GTCTC 2 cut(s) 187, 492
BstMBI GATC 2 cut(s) 301, 405
BstMWI GCNNNNNNNGC 2 cut(s) 292, 822
BstNI CCWGG 1 cut(s) 695
BstPI GGTNACC 1 cut(s) 445
BstSCI CCNGG 1 cut(s) 693
BstSLI GKGCMC 1 cut(s) 838
BstV1I GCAGC 2 cut(s) 348, 592
BstV2I GAAGAC 1 cut(s) 241
BtsI GCAGTG 2 cut(s) 137, 463
BtsIMutI CAGTG 4 cut(s) 137, 405, 463, 736
BveI ACCTGC 1 cut(s) 689
CfoI GCGC 1 cut(s) 686
Cfr13I GGNCC 1 cut(s) 257
CseI GACGC 1 cut(s) 831
Csp6I GTAC 4 cut(s) 61, 207, 493, 757
CviAII CATG 2 cut(s) 245, 269
CviJI RGCY 7 cut(s) 281, 286, 462, 655, 707, 782, 796
CviKI_1 RGCY 7 cut(s) 281, 286, 462, 655, 707, 782, 796
CviQI GTAC 4 cut(s) 61, 207, 493, 757
DdeI CTNAG 2 cut(s) 489, 501
DpnI GATC 2 cut(s) 303, 407
DpnII GATC 2 cut(s) 301, 405
Eam1104I CTCTTC 3 cut(s) 285, 326, 548
EarI CTCTTC 3 cut(s) 285, 326, 548
Eco47I GGWCC 1 cut(s) 257
Eco57I CTGAAG 1 cut(s) 309
Eco91I GGTNACC 1 cut(s) 445
EcoO65I GGTNACC 1 cut(s) 445
EcoRII CCWGG 1 cut(s) 693
FaeI CATG 2 cut(s) 248, 272
FaiI YATR 9 cut(s) 212, 246, 270, 274, 367, 452, 576, 713, 755
FatI CATG 2 cut(s) 244, 268
FbaI TGATCA 1 cut(s) 405
Fnu4HI GCNGC 3 cut(s) 337, 606, 716
Fsp4HI GCNGC 3 cut(s) 337, 606, 716
GlaI GCGC 1 cut(s) 685
GluI GCNGC 3 cut(s) 337, 606, 716
HapII CCGG 3 cut(s) 227, 255, 430
HgaI GACGC 1 cut(s) 831
HhaI GCGC 1 cut(s) 686
Hin1I GRCGYC 1 cut(s) 823
Hin1II CATG 2 cut(s) 248, 272
Hin6I GCGC 1 cut(s) 684
HinP1I GCGC 1 cut(s) 684
HincII GTYRAC 1 cut(s) 586
HindII GTYRAC 1 cut(s) 586
HindIII AAGCTT 1 cut(s) 653
HpaII CCGG 3 cut(s) 227, 255, 430
HphI GGTGA 4 cut(s) 457, 583, 661, 803
Hpy166II GTNNAC 3 cut(s) 63, 586, 836
Hpy188I TCNGA 3 cut(s) 105, 376, 502
Hpy188III TCNNGA 2 cut(s) 409, 430
Hpy8I GTNNAC 3 cut(s) 63, 586, 836
HpyAV CCTTC 5 cut(s) 46, 132, 270, 640, 849
HpyCH4III ACNGT 4 cut(s) 198, 400, 731, 791
HpyCH4IV ACGT 2 cut(s) 59, 600
HpyCH4V TGCA 4 cut(s) 117, 393, 468, 836
HpyF10VI GCNNNNNNNGC 2 cut(s) 292, 822
HpyF3I CTNAG 2 cut(s) 489, 501
HpySE526I ACGT 2 cut(s) 59, 600
Hsp92I GRCGYC 1 cut(s) 823
Hsp92II CATG 2 cut(s) 248, 272
HspAI GCGC 1 cut(s) 684
Kpn2I TCCGGA 1 cut(s) 429
Ksp22I TGATCA 1 cut(s) 405
Kzo9I GATC 2 cut(s) 301, 405
LguI GCTCTTC 2 cut(s) 285, 326
Lsp1109I GCAGC 2 cut(s) 348, 592
LweI GCATC 1 cut(s) 250
MaeII ACGT 2 cut(s) 59, 600
MaeIII GTNAC 5 cut(s) 158, 445, 596, 676, 785
MalI GATC 2 cut(s) 303, 407
MboI GATC 2 cut(s) 301, 405
MboII GAAGA 8 cut(s) 31, 173, 241, 302, 340, 343, 562, 565
MhlI GDGCHC 2 cut(s) 297, 838
MluCI AATT 4 cut(s) 164, 317, 439, 666
MmeI TCCRAC 1 cut(s) 799
MnlI CCTC 8 cut(s) 16, 83, 426, 466, 549, 606, 818, 837
MroI TCCGGA 1 cut(s) 429
MseI TTAA 2 cut(s) 167, 657
MslI CAYNNNNRTG 3 cut(s) 398, 401, 752
MspI CCGG 3 cut(s) 227, 255, 430
MspR9I CCNGG 1 cut(s) 695
MvaI CCWGG 1 cut(s) 695
MwoI GCNNNNNNNGC 2 cut(s) 292, 822
NdeII GATC 2 cut(s) 301, 405
NlaIII CATG 2 cut(s) 248, 272
NlaIV GGNNCC 2 cut(s) 743, 777
NmuCI GTSAC 2 cut(s) 445, 785
OliI CACNNNNGTG 1 cut(s) 398
PciSI GCTCTTC 2 cut(s) 285, 326
PkrI GCNGC 3 cut(s) 338, 607, 717
Ppu21I YACGTR 1 cut(s) 60
Psp6I CCWGG 1 cut(s) 693
PspEI GGTNACC 1 cut(s) 445
PspGI CCWGG 1 cut(s) 693
PspN4I GGNNCC 2 cut(s) 743, 777
PspPI GGNCC 1 cut(s) 257
RsaI GTAC 4 cut(s) 62, 208, 494, 758
RsaNI GTAC 4 cut(s) 61, 207, 493, 757
RseI CAYNNNNRTG 3 cut(s) 398, 401, 752
SapI GCTCTTC 2 cut(s) 285, 326
SaqAI TTAA 2 cut(s) 167, 657
SatI GCNGC 3 cut(s) 337, 606, 716
Sau3AI GATC 2 cut(s) 301, 405
Sau96I GGNCC 1 cut(s) 257
ScrFI CCNGG 1 cut(s) 695
SduI GDGCHC 2 cut(s) 297, 838
SfaNI GCATC 1 cut(s) 250
SinI GGWCC 1 cut(s) 257
SmiMI CAYNNNNRTG 3 cut(s) 398, 401, 752
Sse9I AATT 4 cut(s) 164, 317, 439, 666
SsiI CCGC 1 cut(s) 715
SspI AATATT 2 cut(s) 223, 415
StyD4I CCNGG 1 cut(s) 693
TaaI ACNGT 4 cut(s) 198, 400, 731, 791
TaiI ACGT 2 cut(s) 62, 603
TaqI TCGA 2 cut(s) 507, 842
TasI AATT 4 cut(s) 164, 317, 439, 666
TatI WGTACW 2 cut(s) 492, 756
TauI GCSGC 1 cut(s) 718
Tru1I TTAA 2 cut(s) 167, 657
Tru9I TTAA 2 cut(s) 167, 657
TscAI CASTG 4 cut(s) 137, 405, 470, 736
TseFI GTSAC 2 cut(s) 445, 785
TseI GCWGC 2 cut(s) 336, 605
Tsp45I GTSAC 2 cut(s) 445, 785
TspDTI ATGAA 3 cut(s) 227, 257, 360
TspGWI ACGGA 2 cut(s) 39, 253
TspRI CASTG 4 cut(s) 137, 405, 470, 736
VneI GTGCAC 1 cut(s) 834
VpaK11BI GGWCC 1 cut(s) 257
XapI RAATTY 1 cut(s) 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.