Rroxscaffold_7G00173030

RNA recognition motif 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001927
Physical Location & Seq
Forward (+)
13121416 .. 13122546
1131 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00173030.1

Sequence Viewer

Length: 615 bp
ATGAGACGACTTCGAAAAAGGAACGGTCGACGAAAAAGGAACATTGGTGCTTTGAGTCGTGGTGCTATTGGGGAGGGAGGTGTAATTCCATTTCCTTCAGGTCCGGATCAGCAGCAAAATGGGTCGTCAGGTACTACAACTATCATGATAAAGAATATCCCAAACCAGTTCAGGAGGAGTGATCTACTGGGTATATTGACGGAGCATTGCTTGGTAGAAAACCTAGATGCTGTGGTGCGGTCTGATCCTAACAAGTCCGAGTTTGATTTTGTGTATTTGCCCATGGATTTCAACAAAAATAGGGGTAGCAATTTGGGTTACGCATTTGTAAACTTCACCGGTGCAATTGGGGCACAAAGATTCTATCAGCGTTACCACAATTTTGAGTGGGATGTTGAACAGAACAAAAAAACATGTGGAATTACCTGCGCTAAAATTCAGGGAAAGAAAGCACTAATCGGGAATTTTAGGCACAAAGTATTCCGGTGCGAGTGTGACGAGTACTTGCCTGTGGTTGTCGCACCTCCATGCGATGGTGTGTCGCCTCCGAAGCTCACACTTCTTGGAAAGCTTAGGGGTGCACCCAAGTACCCCACCAGTAGAATGAGAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_2

Protein Analysis

204

Amino Acids

22.95

Weight (kDa)

9.95

Isoelectric Point (pI)

52.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_2 PF04059 46 - 157 1.8e-17 RNA recognition motif 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 434
AccB7I CCANNNNNTGG 1 cut(s) 533
AccI GTMKAC 1 cut(s) 28
AccIII TCCGGA 1 cut(s) 103
AciI CCGC 1 cut(s) 238
AclWI GGATC 2 cut(s) 114, 239
AcsI RAATTY 2 cut(s) 435, 463
AcuI CTGAAG 1 cut(s) 81
AfaI GTAC 3 cut(s) 133, 503, 590
AfiI CCNNNNNNNGG 1 cut(s) 533
AflIII ACRYGT 1 cut(s) 413
AgeI ACCGGT 1 cut(s) 338
AgsI TTSAA 2 cut(s) 292, 398
AluBI AGCT 2 cut(s) 553, 571
AluI AGCT 2 cut(s) 553, 571
Alw21I GWGCWC 1 cut(s) 583
Alw44I GTGCAC 1 cut(s) 579
AlwI GGATC 2 cut(s) 114, 239
Aor13HI TCCGGA 1 cut(s) 103
ApaLI GTGCAC 1 cut(s) 579
ApeKI GCWGC 1 cut(s) 112
ApoI RAATTY 2 cut(s) 435, 463
AsiGI ACCGGT 1 cut(s) 338
AspLEI GCGC 1 cut(s) 431
AspS9I GGNCC 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 328
AsuII TTCGAA 1 cut(s) 13
AvaII GGWCC 1 cut(s) 101
BaeGI GKGCMC 2 cut(s) 355, 583
BaeI ACNNNNGTAYC 2 cut(s) 572, 605
Bbv12I GWGCWC 1 cut(s) 583
BbvI GCAGC 1 cut(s) 124
BccI CCATC 1 cut(s) 527
BfaI CTAG 1 cut(s) 224
BfuAI ACCTGC 1 cut(s) 434
BisI GCNGC 1 cut(s) 113
BlsI GCNGC 1 cut(s) 114
BmcAI AGTACT 1 cut(s) 503
Bme18I GGWCC 1 cut(s) 101
BmgT120I GGNCC 1 cut(s) 101
BmrI ACTGGG 1 cut(s) 197
BmsI GCATC 1 cut(s) 217
BmuI ACTGGG 1 cut(s) 197
Bpu10I CCTNAGC 1 cut(s) 572
Bpu14I TTCGAA 1 cut(s) 13
BsaJI CCNNGG 1 cut(s) 282
BsaWI WCCGGW 3 cut(s) 103, 338, 483
Bsc4I CCNNNNNNNGG 1 cut(s) 533
Bse118I RCCGGY 1 cut(s) 338
Bse1I ACTGG 3 cut(s) 166, 192, 597
Bse3DI GCAATG 1 cut(s) 205
BseAI TCCGGA 1 cut(s) 103
BseDI CCNNGG 1 cut(s) 282
BseGI GGATG 1 cut(s) 397
BseLI CCNNNNNNNGG 1 cut(s) 533
BseMI GCAATG 1 cut(s) 205
BseNI ACTGG 3 cut(s) 166, 192, 597
BseRI GAGGAG 1 cut(s) 190
BseSI GKGCMC 2 cut(s) 355, 583
BseXI GCAGC 1 cut(s) 124
Bsh1285I CGRYCG 1 cut(s) 28
BshTI ACCGGT 1 cut(s) 338
BsiEI CGRYCG 1 cut(s) 28
BsiHKAI GWGCWC 1 cut(s) 583
BsiSI CCGG 3 cut(s) 104, 339, 484
BslI CCNNNNNNNGG 1 cut(s) 533
Bsp119I TTCGAA 1 cut(s) 13
Bsp1286I GDGCHC 2 cut(s) 355, 583
Bsp13I TCCGGA 1 cut(s) 103
Bsp143I GATC 3 cut(s) 106, 181, 244
Bsp19I CCATGG 1 cut(s) 282
BspACI CCGC 1 cut(s) 238
BspEI TCCGGA 1 cut(s) 103
BspHI TCATGA 1 cut(s) 144
BspMI ACCTGC 1 cut(s) 434
BspPI GGATC 2 cut(s) 114, 239
BspT104I TTCGAA 1 cut(s) 13
BsrDI GCAATG 1 cut(s) 205
BsrFI RCCGGY 1 cut(s) 338
BsrI ACTGG 3 cut(s) 166, 192, 597
BssAI RCCGGY 1 cut(s) 338
BssECI CCNNGG 1 cut(s) 282
BssMI GATC 3 cut(s) 106, 181, 244
BssT1I CCWWGG 1 cut(s) 282
Bst4CI ACNGT 1 cut(s) 26
BstBI TTCGAA 1 cut(s) 13
BstDEI CTNAG 1 cut(s) 572
BstDSI CCRYGG 1 cut(s) 282
BstF5I GGATG 1 cut(s) 397
BstHHI GCGC 1 cut(s) 431
BstKTI GATC 3 cut(s) 109, 184, 247
BstMBI GATC 3 cut(s) 106, 181, 244
BstMCI CGRYCG 1 cut(s) 28
BstMWI GCNNNNNNNGC 2 cut(s) 350, 550
BstNSI RCATGY 1 cut(s) 417
BstSLI GKGCMC 2 cut(s) 355, 583
BstV1I GCAGC 1 cut(s) 124
BtgI CCRYGG 1 cut(s) 282
BtgZI GCGATG 1 cut(s) 546
BtsCI GGATG 1 cut(s) 397
BveI ACCTGC 1 cut(s) 434
CciI TCATGA 1 cut(s) 144
CfoI GCGC 1 cut(s) 431
Cfr10I RCCGGY 1 cut(s) 338
Cfr13I GGNCC 1 cut(s) 101
Csp6I GTAC 3 cut(s) 132, 502, 589
CspAI ACCGGT 1 cut(s) 338
CviAII CATG 4 cut(s) 145, 283, 414, 528
CviJI RGCY 2 cut(s) 553, 571
CviKI_1 RGCY 2 cut(s) 553, 571
CviQI GTAC 3 cut(s) 132, 502, 589
DdeI CTNAG 1 cut(s) 572
DpnI GATC 3 cut(s) 108, 183, 246
DpnII GATC 3 cut(s) 106, 181, 244
Eco130I CCWWGG 1 cut(s) 282
Eco47I GGWCC 1 cut(s) 101
Eco57I CTGAAG 1 cut(s) 81
EcoT14I CCWWGG 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 282
FaeI CATG 4 cut(s) 148, 286, 417, 531
FaiI YATR 5 cut(s) 146, 194, 284, 415, 529
FatI CATG 4 cut(s) 144, 282, 413, 527
FblI GTMKAC 1 cut(s) 28
Fnu4HI GCNGC 1 cut(s) 113
FokI GGATG 1 cut(s) 404
Fsp4HI GCNGC 1 cut(s) 113
FspBI CTAG 1 cut(s) 224
GlaI GCGC 1 cut(s) 430
GluI GCNGC 1 cut(s) 113
HapII CCGG 3 cut(s) 104, 339, 484
HhaI GCGC 1 cut(s) 431
Hin1II CATG 4 cut(s) 148, 286, 417, 531
Hin6I GCGC 1 cut(s) 429
HinP1I GCGC 1 cut(s) 429
HincII GTYRAC 1 cut(s) 29
HindII GTYRAC 1 cut(s) 29
HindIII AAGCTT 1 cut(s) 569
HinfI GANTC 3 cut(s) 55, 360, 609
HpaII CCGG 3 cut(s) 104, 339, 484
HphI GGTGA 1 cut(s) 328
Hpy166II GTNNAC 3 cut(s) 29, 331, 581
Hpy188I TCNGA 3 cut(s) 244, 259, 549
Hpy188III TCNNGA 4 cut(s) 104, 145, 172, 460
Hpy8I GTNNAC 3 cut(s) 29, 331, 581
Hpy99I CGWCG 1 cut(s) 33
HpyAV CCTTC 1 cut(s) 105
HpyCH4III ACNGT 1 cut(s) 26
HpyCH4V TGCA 2 cut(s) 344, 581
HpyF10VI GCNNNNNNNGC 2 cut(s) 350, 550
HpyF3I CTNAG 1 cut(s) 572
Hsp92II CATG 4 cut(s) 148, 286, 417, 531
HspAI GCGC 1 cut(s) 429
Kpn2I TCCGGA 1 cut(s) 103
Kzo9I GATC 3 cut(s) 106, 181, 244
LmnI GCTCC 1 cut(s) 202
Lsp1109I GCAGC 1 cut(s) 124
LweI GCATC 1 cut(s) 217
MaeI CTAG 1 cut(s) 224
MaeIII GTNAC 3 cut(s) 317, 371, 494
MalI GATC 3 cut(s) 108, 183, 246
MboI GATC 3 cut(s) 106, 181, 244
MfeI CAATTG 1 cut(s) 345
MhlI GDGCHC 2 cut(s) 355, 583
MluCI AATT 7 cut(s) 84, 310, 345, 379, 420, 435, 463
MlyI GAGTC 1 cut(s) 64
MnlI CCTC 5 cut(s) 67, 71, 168, 534, 555
MroI TCCGGA 1 cut(s) 103
MslI CAYNNNNRTG 1 cut(s) 526
MspI CCGG 3 cut(s) 104, 339, 484
MunI CAATTG 1 cut(s) 345
MwoI GCNNNNNNNGC 2 cut(s) 350, 550
NcoI CCATGG 1 cut(s) 282
NdeII GATC 3 cut(s) 106, 181, 244
NlaIII CATG 4 cut(s) 148, 286, 417, 531
NmuCI GTSAC 1 cut(s) 494
NspI RCATGY 1 cut(s) 417
NspV TTCGAA 1 cut(s) 13
PagI TCATGA 1 cut(s) 144
PciI ACATGT 1 cut(s) 413
PfeI GAWTC 2 cut(s) 360, 609
PflMI CCANNNNNTGG 1 cut(s) 533
PinAI ACCGGT 1 cut(s) 338
PkrI GCNGC 1 cut(s) 114
PleI GAGTC 1 cut(s) 63
PpsI GAGTC 1 cut(s) 63
PscI ACATGT 1 cut(s) 413
PspPI GGNCC 1 cut(s) 101
RsaI GTAC 3 cut(s) 133, 503, 590
RsaNI GTAC 3 cut(s) 132, 502, 589
RseI CAYNNNNRTG 1 cut(s) 526
SalI GTCGAC 1 cut(s) 27
SatI GCNGC 1 cut(s) 113
Sau3AI GATC 3 cut(s) 106, 181, 244
Sau96I GGNCC 1 cut(s) 101
ScaI AGTACT 1 cut(s) 503
SchI GAGTC 1 cut(s) 64
SduI GDGCHC 2 cut(s) 355, 583
SetI ASST 8 cut(s) 82, 103, 133, 225, 428, 526, 555, 573
SfaNI GCATC 1 cut(s) 217
SfuI TTCGAA 1 cut(s) 13
SgrAI CRCCGGYG 1 cut(s) 338
SinI GGWCC 1 cut(s) 101
SmiMI CAYNNNNRTG 1 cut(s) 526
Sse9I AATT 7 cut(s) 84, 310, 345, 379, 420, 435, 463
SsiI CCGC 1 cut(s) 238
SspMI CTAG 1 cut(s) 224
StyI CCWWGG 1 cut(s) 282
TaaI ACNGT 1 cut(s) 26
TaqI TCGA 2 cut(s) 13, 28
TasI AATT 7 cut(s) 84, 310, 345, 379, 420, 435, 463
TatI WGTACW 1 cut(s) 501
TfiI GAWTC 2 cut(s) 360, 609
TseFI GTSAC 1 cut(s) 494
TseI GCWGC 1 cut(s) 112
Tsp45I GTSAC 1 cut(s) 494
TspGWI ACGGA 1 cut(s) 215
Van91I CCANNNNNTGG 1 cut(s) 533
VneI GTGCAC 1 cut(s) 579
VpaK11BI GGWCC 1 cut(s) 101
XapI RAATTY 2 cut(s) 435, 463
XceI RCATGY 1 cut(s) 417
XmiI GTMKAC 1 cut(s) 28
XspI CTAG 1 cut(s) 224
ZrmI AGTACT 1 cut(s) 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.